Visualizing related metabolic pathways in two and a half dimensions

Ulrik Brandes; Tim Dwyer; Falk Schreiber

doi:10.1007/978-3-540-24595-7_10

Visualizing related metabolic pathways in two and a half dimensions

Ulrik Brandes
, Tim Dwyer
, Falk Schreiber

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

35 Citations (Scopus)

Abstract

We propose a method for visualizing a set of related metabolic pathways using 2 1/2D graph drawing. Interdependent, twodimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. Layouts are determined by a global layout of the union of all pathway-representing graphs using a variant of the proven Sugiyama approach for layered graph drawing that allows edges to cross if they appear in different graphs.

Original language	English
Title of host publication	Graph Drawing
Subtitle of host publication	11th International Symposium, GD 2003 Perugia, Italy, September 21-24, 2003 Revised Papers
Editors	Giuseppe Liotta
Place of Publication	Berlin Germany
Publisher	Springer
Pages	111-122
Number of pages	12
ISBN (Print)	3540208313
DOIs	https://doi.org/10.1007/978-3-540-24595-7_10
Publication status	Published - 1 Dec 2004
Externally published	Yes
Event	Graph Drawing 2003 - Perugia, Italy Duration: 21 Sept 2003 → 24 Sept 2003 Conference number: 11th https://link.springer.com/book/10.1007/b94919 (Proceedings)

Publication series

Name	Lecture Notes in Computer Science
Publisher	Springer
Volume	2912
ISSN (Print)	0302-9743

Conference

Conference	Graph Drawing 2003
Abbreviated title	GD 2003
Country/Territory	Italy
City	Perugia
Period	21/09/03 → 24/09/03
Internet address	https://link.springer.com/book/10.1007/b94919 (Proceedings)

Access to Document

10.1007/978-3-540-24595-7_10

Cite this

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title = "Visualizing related metabolic pathways in two and a half dimensions",

abstract = "We propose a method for visualizing a set of related metabolic pathways using 2 1/2D graph drawing. Interdependent, twodimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. Layouts are determined by a global layout of the union of all pathway-representing graphs using a variant of the proven Sugiyama approach for layered graph drawing that allows edges to cross if they appear in different graphs.",

author = "Ulrik Brandes and Tim Dwyer and Falk Schreiber",

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Brandes, U, Dwyer, T & Schreiber, F 2004, Visualizing related metabolic pathways in two and a half dimensions. in G Liotta (ed.), Graph Drawing: 11th International Symposium, GD 2003 Perugia, Italy, September 21-24, 2003 Revised Papers. Lecture Notes in Computer Science, vol. 2912, Springer, Berlin Germany, pp. 111-122, Graph Drawing 2003, Perugia, Italy, 21/09/03. https://doi.org/10.1007/978-3-540-24595-7_10

Visualizing related metabolic pathways in two and a half dimensions. / Brandes, Ulrik; Dwyer, Tim; Schreiber, Falk.
Graph Drawing: 11th International Symposium, GD 2003 Perugia, Italy, September 21-24, 2003 Revised Papers. ed. / Giuseppe Liotta. Berlin Germany: Springer, 2004. p. 111-122 (Lecture Notes in Computer Science; Vol. 2912).

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

TY - GEN

T1 - Visualizing related metabolic pathways in two and a half dimensions

AU - Brandes, Ulrik

AU - Dwyer, Tim

AU - Schreiber, Falk

N1 - Conference code: 11th

PY - 2004/12/1

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N2 - We propose a method for visualizing a set of related metabolic pathways using 2 1/2D graph drawing. Interdependent, twodimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. Layouts are determined by a global layout of the union of all pathway-representing graphs using a variant of the proven Sugiyama approach for layered graph drawing that allows edges to cross if they appear in different graphs.

AB - We propose a method for visualizing a set of related metabolic pathways using 2 1/2D graph drawing. Interdependent, twodimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. Layouts are determined by a global layout of the union of all pathway-representing graphs using a variant of the proven Sugiyama approach for layered graph drawing that allows edges to cross if they appear in different graphs.

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U2 - 10.1007/978-3-540-24595-7_10

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SN - 3540208313

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PB - Springer

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T2 - Graph Drawing 2003

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ER -

Visualizing related metabolic pathways in two and a half dimensions

Abstract

Publication series

Conference

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Cite this