TY - JOUR
T1 - To what are woodland birds responding? Inference on relative importance of in-site habitat variables using several ensemble habitat modelling techniques
AU - Yen, Jian
AU - Thomson, James
AU - Vesk, Peter
AU - Mac Nally, Ralph Charles
PY - 2011
Y1 - 2011
N2 - We sought to identify those in-site habitat characteristics that best predict distributions of woodland birds in the box
ironbark region of central Victoria, Australia. Our focus was on comparing and melding outcomes from several forms of
ensemble modelling methods, which account for uncertainty in model structure and allow assessments of variable
importance. We used boosted regression trees (BRT), Bayesian additive regression trees (BART) and random forests (RF)
to model bird occurrences for 47 species using 43 predictor variables measured at 184 2-ha sites. The majority of
predictor variables were in-site habitat variables, but vegetation cover in the surrounding landscape (500 m radius) and
geographic coordinates were included to account for known effects of habitat fragmentation and of geographic clines.
A consensus model also was developed, built from averaged predictions from the three techniques. We subdivided
the avifauna into guilds and other categories (e.g. conservation status) to examine whether there were differences among
such subdivisions. Based on cross validation, the consensus model and RF performed best, followed by BART and then
BRT. Of the in-site habitat variables, the basal area of red-ironbark trees and groundstorey characteristics such as fineand
coarse-litter cover and litter depth had greatest influence on bird occurrences. These results can inform on-site
restoration actions (what to restore) and, therefore, complement strategic landscape planning (where and when to
restore).
AB - We sought to identify those in-site habitat characteristics that best predict distributions of woodland birds in the box
ironbark region of central Victoria, Australia. Our focus was on comparing and melding outcomes from several forms of
ensemble modelling methods, which account for uncertainty in model structure and allow assessments of variable
importance. We used boosted regression trees (BRT), Bayesian additive regression trees (BART) and random forests (RF)
to model bird occurrences for 47 species using 43 predictor variables measured at 184 2-ha sites. The majority of
predictor variables were in-site habitat variables, but vegetation cover in the surrounding landscape (500 m radius) and
geographic coordinates were included to account for known effects of habitat fragmentation and of geographic clines.
A consensus model also was developed, built from averaged predictions from the three techniques. We subdivided
the avifauna into guilds and other categories (e.g. conservation status) to examine whether there were differences among
such subdivisions. Based on cross validation, the consensus model and RF performed best, followed by BART and then
BRT. Of the in-site habitat variables, the basal area of red-ironbark trees and groundstorey characteristics such as fineand
coarse-litter cover and litter depth had greatest influence on bird occurrences. These results can inform on-site
restoration actions (what to restore) and, therefore, complement strategic landscape planning (where and when to
restore).
UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1600-0587.2011.06651.x/pdf
U2 - 10.1111/j.1600-0587.2011.06651.x
DO - 10.1111/j.1600-0587.2011.06651.x
M3 - Article
SN - 0906-7590
VL - 34
SP - 946
EP - 954
JO - Ecography
JF - Ecography
IS - 6
ER -