The proteome browser web portal

Robert JA Goode, Simon Xiaoming Yu, Anitha Kannan, Jeffrey H Christiansen, Anthony Beitz, William S Hancock, Edouard C Nice, Alexander Ian Smith

Research output: Contribution to journalArticleResearchpeer-review

Abstract

In 2010, the Human Proteome Organization launched the Human Proteome Project (HPP), aimed at identifying and characterizing the proteome of the human body. To support complete coverage, one arm of the project will take a gene- or chromosomal-centric strategy (C-HPP) aimed at identifying at least one protein product from each protein-coding gene. Despite multiple large international biological databases housing genomic and protein data, there is currently no single system that integrates updated pertinent information from each of these data repositories and assembles the information into a searchable format suitable for the type of global proteomics effort proposed by the C-HPP. We have undertaken the goal of producing a data integration and analysis software system and browser for the C-HPP effort and of making data collections from this resource discoverable through metadata repositories, such as Australian National Data Service s Research Data Australia. Here we present our vision and progress toward the goal of developing a comprehensive data integration and analysis software tool that provides a snapshot of currently available proteomic related knowledge around each gene product, which will ultimately assist in analyzing biological function and the study of human physiology in health and disease.
Original languageEnglish
Pages (from-to)172 - 178
Number of pages7
JournalJournal of Proteome Research
Volume12
Issue number1
DOIs
Publication statusPublished - 2013

Cite this

Goode, R. JA., Yu, S. X., Kannan, A., Christiansen, J. H., Beitz, A., Hancock, W. S., ... Smith, A. I. (2013). The proteome browser web portal. Journal of Proteome Research, 12(1), 172 - 178. https://doi.org/10.1021/pr3010056
Goode, Robert JA ; Yu, Simon Xiaoming ; Kannan, Anitha ; Christiansen, Jeffrey H ; Beitz, Anthony ; Hancock, William S ; Nice, Edouard C ; Smith, Alexander Ian. / The proteome browser web portal. In: Journal of Proteome Research. 2013 ; Vol. 12, No. 1. pp. 172 - 178.
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Goode, RJA, Yu, SX, Kannan, A, Christiansen, JH, Beitz, A, Hancock, WS, Nice, EC & Smith, AI 2013, 'The proteome browser web portal', Journal of Proteome Research, vol. 12, no. 1, pp. 172 - 178. https://doi.org/10.1021/pr3010056

The proteome browser web portal. / Goode, Robert JA; Yu, Simon Xiaoming; Kannan, Anitha; Christiansen, Jeffrey H; Beitz, Anthony; Hancock, William S; Nice, Edouard C; Smith, Alexander Ian.

In: Journal of Proteome Research, Vol. 12, No. 1, 2013, p. 172 - 178.

Research output: Contribution to journalArticleResearchpeer-review

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Goode RJA, Yu SX, Kannan A, Christiansen JH, Beitz A, Hancock WS et al. The proteome browser web portal. Journal of Proteome Research. 2013;12(1):172 - 178. https://doi.org/10.1021/pr3010056