Processes Binary Data Obtained from Fragment Analysis

BinMatInput_ordination | Example input data containing a consolidated binary matrix... |

BinMatInput_reps | Example input data containing a binary matrix comprising... |

check.data | Checks binary matrix for unwanted characters. |

consolidate | Consolidates replicate pairs in a binary matrix. |

errors | Calculates Jaccard and Euclidean error rates. |

group.names | Outputs group names specified in the input file for the... |

nmds | Creates a non-metric multidimensional scaling plot (nMDS). |

peak.remove | Removes samples with peaks equal to or less than a specified... |

peaks.consolidated | Calculates peak numbers for a consolidated data set (total,... |

peaks.original | Calculates peak numbers for the data set with all replicates... |

scree | Draws a scree plot. |

shepard | Creates a shepard plot. |

upgma | Draws a hierarchical clustering tree (UPGMA). |

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