Self-supervised multimodal generalized zero shot learning for Gleason grading

Dwarikanath Mahapatra, Behzad Bozorgtabar, Shiba Kuanar, Zongyuan Ge

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

3 Citations (Scopus)

Abstract

Gleason grading from histopathology images is essential for accurate prostate cancer (PCa) diagnosis. Since such images are obtained after invasive tissue resection quick diagnosis is challenging under the existing paradigm. We propose a method to predict Gleason grades from magnetic resonance (MR) images which are non-interventional and easily acquired. We solve the problem in a generalized zero-shot learning (GZSL) setting since we may not access training images of every disease grade. Synthetic MRI feature vectors of unseen grades (classes) are generated by exploiting Gleason grades’ ordered nature through a conditional variational autoencoder (CVAE) incorporating self-supervised learning. Corresponding histopathology features are generated using cycle GANs, and combined with MR features to predict Gleason grades of test images. Experimental results show our method outperforms competing feature generating approaches for GZSL, and comes close to performance of fully supervised methods.

Original languageEnglish
Title of host publicationDomain Adaptation and Representation Transfer, and Affordable Healthcare and AI for Resource Diverse Global Health
Subtitle of host publicationThird MICCAI Workshop, DART 2021 and First MICCAI Workshop, FAIR 2021 Held in Conjunction with MICCAI 2021 Strasbourg, France, September 27 and October 1, 2021 Proceedings
EditorsShadi Albarqouni, M. Jorge Cardoso, Qi Dou, Konstantinos Kamnitsas, Bishesh Khanal, Islem Rekik, Nicola Rieke, Debdoot Sheet, Sotirios Tsaftaris, Daguang Xu, Ziyue Xu
Place of PublicationCham Switzerland
PublisherSpringer
Pages46-56
Number of pages11
Edition1st
ISBN (Electronic)9783030877224
ISBN (Print)9783030877217
DOIs
Publication statusPublished - 2021
EventMICCAI Workshop on Domain Adaptation and Representation Transfer 2021 - Strasbourg, France
Duration: 27 Sept 20211 Oct 2021
Conference number: 3rd
https://link.springer.com/book/10.1007/978-3-030-87722-4 (Proceedings)

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12968 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Workshop

WorkshopMICCAI Workshop on Domain Adaptation and Representation Transfer 2021
Abbreviated titleDART 2021
Country/TerritoryFrance
CityStrasbourg
Period27/09/211/10/21
OtherHeld in conjunction with Medical Image Computing and Computer-Assisted Intervention 2021 (MICCAI 2021)
Internet address

Keywords

  • CVAE
  • Gleason grading
  • GZSL
  • Histopathology
  • MRI

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