Self-supervised learning of inter-label geometric relationships for Gleason grade segmentation

Dwarikanath Mahapatra, Shiba Kuanar, Behzad Bozorgtabar, Zongyuan Ge

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

4 Citations (Scopus)

Abstract

Segmentation of Prostate Cancer (PCa) tissues from Gleason graded histopathology images is vital for accurate diagnosis. Although deep learning (DL) based segmentation methods achieve state-of-the-art accuracy, they rely on large datasets with manual annotations. We propose a method to synthesize PCa histopathology images by learning the geometrical relationship between different disease labels using self-supervised learning. Manual segmentation maps from the training set are used to train a Shape Restoration Network (ShaRe-Net) that predicts missing mask segments in a self-supervised manner. Using DenseUNet as the backbone generator architecture we incorporate latent variable sampling to inject diversity in the image generation process and thus improve robustness. Experimental results demonstrate the superiority of our method over competing image synthesis methods for segmentation tasks. Ablation studies show the benefits of integrating geometry and diversity in generating high-quality images. Our self-supervised approach with limited class-labeled data achieves better performance than fully supervised learning.

Original languageEnglish
Title of host publicationDomain Adaptation and Representation Transfer, and Affordable Healthcare and AI for Resource Diverse Global Health
Subtitle of host publicationThird MICCAI Workshop, DART 2021 and First MICCAI Workshop, FAIR 2021 Held in Conjunction with MICCAI 2021 Strasbourg, France, September 27 and October 1, 2021 Proceedings
EditorsShadi Albarqouni, M. Jorge Cardoso, Qi Dou, Konstantinos Kamnitsas, Bishesh Khanal, Islem Rekik, Nicola Rieke, Debdoot Sheet, Sotirios Tsaftaris, Daguang Xu, Ziyue Xu
Place of PublicationCham Switzerland
PublisherSpringer
Pages57-67
Number of pages11
Edition1st
ISBN (Electronic)9783030877224
ISBN (Print)9783030877217
DOIs
Publication statusPublished - 2021
EventMICCAI Workshop on Domain Adaptation and Representation Transfer 2021 - Strasbourg, France
Duration: 27 Sept 20211 Oct 2021
Conference number: 3rd
https://link.springer.com/book/10.1007/978-3-030-87722-4 (Proceedings)

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume12968 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Workshop

WorkshopMICCAI Workshop on Domain Adaptation and Representation Transfer 2021
Abbreviated titleDART 2021
Country/TerritoryFrance
CityStrasbourg
Period27/09/211/10/21
OtherHeld in conjunction with Medical Image Computing and Computer-Assisted Intervention 2021 (MICCAI 2021)
Internet address

Keywords

  • GANs
  • Geometric modeling
  • Self-supervised learning

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