Abstract
Segmentation of Prostate Cancer (PCa) tissues from Gleason graded histopathology images is vital for accurate diagnosis. Although deep learning (DL) based segmentation methods achieve state-of-the-art accuracy, they rely on large datasets with manual annotations. We propose a method to synthesize PCa histopathology images by learning the geometrical relationship between different disease labels using self-supervised learning. Manual segmentation maps from the training set are used to train a Shape Restoration Network (ShaRe-Net) that predicts missing mask segments in a self-supervised manner. Using DenseUNet as the backbone generator architecture we incorporate latent variable sampling to inject diversity in the image generation process and thus improve robustness. Experimental results demonstrate the superiority of our method over competing image synthesis methods for segmentation tasks. Ablation studies show the benefits of integrating geometry and diversity in generating high-quality images. Our self-supervised approach with limited class-labeled data achieves better performance than fully supervised learning.
Original language | English |
---|---|
Title of host publication | Domain Adaptation and Representation Transfer, and Affordable Healthcare and AI for Resource Diverse Global Health |
Subtitle of host publication | Third MICCAI Workshop, DART 2021 and First MICCAI Workshop, FAIR 2021 Held in Conjunction with MICCAI 2021 Strasbourg, France, September 27 and October 1, 2021 Proceedings |
Editors | Shadi Albarqouni, M. Jorge Cardoso, Qi Dou, Konstantinos Kamnitsas, Bishesh Khanal, Islem Rekik, Nicola Rieke, Debdoot Sheet, Sotirios Tsaftaris, Daguang Xu, Ziyue Xu |
Place of Publication | Cham Switzerland |
Publisher | Springer |
Pages | 57-67 |
Number of pages | 11 |
Edition | 1st |
ISBN (Electronic) | 9783030877224 |
ISBN (Print) | 9783030877217 |
DOIs | |
Publication status | Published - 2021 |
Event | MICCAI Workshop on Domain Adaptation and Representation Transfer 2021 - Strasbourg, France Duration: 27 Sept 2021 → 1 Oct 2021 Conference number: 3rd https://link.springer.com/book/10.1007/978-3-030-87722-4 (Proceedings) |
Publication series
Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
---|---|
Volume | 12968 LNCS |
ISSN (Print) | 0302-9743 |
ISSN (Electronic) | 1611-3349 |
Workshop
Workshop | MICCAI Workshop on Domain Adaptation and Representation Transfer 2021 |
---|---|
Abbreviated title | DART 2021 |
Country/Territory | France |
City | Strasbourg |
Period | 27/09/21 → 1/10/21 |
Other | Held in conjunction with Medical Image Computing and Computer-Assisted Intervention 2021 (MICCAI 2021) |
Internet address |
|
Keywords
- GANs
- Geometric modeling
- Self-supervised learning