Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis

Menno C. Van Zelm, Magdalena A. Berkowska, Mirjam Van Der Burg, Jacques J M Van Dongen

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Otherpeer-review

Abstract

The cells of the adaptive immune system, B and T lymphocytes, each generate a unique antigen receptor through V(D)J recombination of their immunoglobulin (Ig) and T-cell receptor (TCR) loci, respectively. Such rearrangements join coding elements to form a coding joint and delete the intervening DNA as circular excision products containing the signal joint. These excision circles are relatively stable structures that cannot replicate and have no function in the cell. Since the coding joint in the genome is replicated with each cell division, the ratio between coding joints and signal joints in a population of B cells can be used as a measure for proliferation. This chapter describes a real-time quantitative polymerase chain reaction (RQ-PCR)-based approach to quantify proliferation through calculating the ratio between coding joints and signal joints of the frequently occurring kappa-deleting rearrangements in the IGK light chain loci in man and mouse. The approach is useful to study the contribution of proliferation to B-cell homeostasis in health and disease.

Original languageEnglish
Title of host publicationImmune Homeostasis
Subtitle of host publicationMethods and Protocols
EditorsAndrew L. Snow, Michael J. Lenardo
Place of PublicationNew York NY USA
PublisherHumana Press
Pages133-145
Number of pages13
ISBN (Electronic)9781627032902
ISBN (Print)9781627032896
DOIs
Publication statusPublished - 2013
Externally publishedYes

Publication series

NameMethods in Molecular Biology
PublisherHumana Press
Volume979
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029

Keywords

  • B cell
  • IGK
  • Immunoglobulin
  • IntronRSS
  • Kde
  • KREC
  • Proliferation
  • Real-time quantitative PCR
  • Replication history
  • V(D)J recombination

Cite this

Van Zelm, M. C., Berkowska, M. A., Van Der Burg, M., & Van Dongen, J. J. M. (2013). Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis. In A. L. Snow, & M. J. Lenardo (Eds.), Immune Homeostasis: Methods and Protocols (pp. 133-145). (Methods in Molecular Biology; Vol. 979). New York NY USA: Humana Press. https://doi.org/10.1007/978-1-62703-290-2_11
Van Zelm, Menno C. ; Berkowska, Magdalena A. ; Van Der Burg, Mirjam ; Van Dongen, Jacques J M. / Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis. Immune Homeostasis: Methods and Protocols. editor / Andrew L. Snow ; Michael J. Lenardo. New York NY USA : Humana Press, 2013. pp. 133-145 (Methods in Molecular Biology).
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Van Zelm, MC, Berkowska, MA, Van Der Burg, M & Van Dongen, JJM 2013, Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis. in AL Snow & MJ Lenardo (eds), Immune Homeostasis: Methods and Protocols. Methods in Molecular Biology, vol. 979, Humana Press, New York NY USA, pp. 133-145. https://doi.org/10.1007/978-1-62703-290-2_11

Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis. / Van Zelm, Menno C.; Berkowska, Magdalena A.; Van Der Burg, Mirjam; Van Dongen, Jacques J M.

Immune Homeostasis: Methods and Protocols. ed. / Andrew L. Snow; Michael J. Lenardo. New York NY USA : Humana Press, 2013. p. 133-145 (Methods in Molecular Biology; Vol. 979).

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Otherpeer-review

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PB - Humana Press

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Van Zelm MC, Berkowska MA, Van Der Burg M, Van Dongen JJM. Real-time quantitative (rq-)pcr approach to quantify the contribution of proliferation to b lymphocyte homeostasis. In Snow AL, Lenardo MJ, editors, Immune Homeostasis: Methods and Protocols. New York NY USA: Humana Press. 2013. p. 133-145. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-290-2_11