QSMART: Quantitative susceptibility mapping artifact reduction technique

Negin Yaghmaie, Warda T. Syeda, Chengchuan Wu, Yicheng Zhang, Tracy D. Zhang, Emma L. Burrows, Amy Brodtmann, Bradford A. Moffat, David K. Wright, Rebecca Glarin, Scott Kolbe, Leigh A. Johnston

Research output: Contribution to journalArticleResearchpeer-review

14 Citations (Scopus)

Abstract

Purpose: Quantitative susceptibility mapping (QSM) is a novel MR technique that allows mapping of tissue susceptibility values from MR phase images. QSM is an ill-conditioned inverse problem, and although several methods have been proposed in the field, in the presence of a wide range of susceptibility sources, streaking artifacts appear around high susceptibility regions and contaminate the whole QSM map. QSMART is a post-processing pipeline that uses two-stage parallel inversion to reduce the streaking artifacts and remove banding artifact at the cortical surface and around the vasculature. Method: Tissue and vein susceptibility values were separately estimated by generating a mask of vasculature driven from the magnitude data using a Frangi filter. Spatially dependent filtering was used for the background field removal step and the two susceptibility estimates were combined in the final QSM map. QSMART was compared to RESHARP/iLSQR and V-SHARP/iLSQR inversion in a numerical phantom, 7T in vivo single and multiple-orientation scans, 9.4T ex vivo mouse data, and 4.7T in vivo rat brain with induced focal ischemia. Results: Spatially dependent filtering showed better suppression of phase artifacts near cortex compared to RESHARP and V-SHARP, while preserving voxels located within regions of interest without brain edge erosion. QSMART showed successful reduction of streaking artifacts as well as improved contrast between different brain tissues compared to the QSM maps obtained by RESHARP/iLSQR and V-SHARP/iLSQR. Conclusion: QSMART can reduce QSM artifacts to enable more robust estimation of susceptibility values in vivo and ex vivo.

Original languageEnglish
Article number117701
Number of pages11
JournalNeuroImage
Volume231
DOIs
Publication statusPublished - 1 May 2021

Keywords

  • Artifact suppression
  • Quantitative Susceptibility Mapping
  • Spatially dependent filtering
  • Streaking artifacts
  • Two-stage parallel inversion

Cite this