Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Eric Deutsch; Catherine Ball; Jules Berman; Steven G Bova; Alvis Brazma; Roger Bumgarner; David Campbell; Helen Causton; Jeffrey Christiansen; Fabrice Daian; Delphone Dauga; Duncan Davidson; Gregory Gimenez; Young Goo; Sean Grimmond; Thorsten Henrich; Bernhard Herrmann; Michael Johnson; Martin Korb; Jason Mills; Asa Oudes; Helen Parkinson; Laura Pascal; Nicolas Pollet; John Quackenbush; Mirana Ramialison; Martin Ringwald; David Salgado; Susanna-Assunta Sansone; Gavin Sherlock; Christian Stoeckert Jnr; Jason Swedlow; Ronald Taylor; Laura Walashek; Anthony Warford; David Wilkinson; Yi Zhou; Leonard I Zon; Alvin Liu; Lawrence True

doi:10.1038/nbt1391

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Eric Deutsch, Catherine Ball, Jules Berman, Steven G Bova, Alvis Brazma, Roger Bumgarner, David Campbell, Helen Causton, Jeffrey Christiansen, Fabrice Daian, Delphone Dauga, Duncan Davidson, Gregory Gimenez, Young Goo, Sean Grimmond, Thorsten Henrich, Bernhard Herrmann, Michael Johnson, Martin Korb, Jason MillsAsa Oudes, Helen Parkinson, Laura Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian Stoeckert Jnr, Jason Swedlow, Ronald Taylor, Laura Walashek, Anthony Warford, David Wilkinson, Yi Zhou, Leonard I Zon, Alvin Liu, Lawrence True

Research output: Contribution to journal › Article › Research › peer-review

106 Citations (Scopus)

Abstract

One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present reporting guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). MISFISHIE is modeled after the Minimum Information About a Microarray Experiment (MIAME) specification for microarray experiments. Both guidelines define what information should be reported without dictating a format for encoding that information. MISFISHIE describes six types of information to be provided for each experiment: experimental design, biomaterials and treatments, reporters, staining, imaging data and image characterizations. This specification has benefited the consortium within which it was developed and is expected to benefit the wider research community. We welcome feedback from the scientific community to help improve our proposal.

Original language	English
Pages (from-to)	305 - 312
Number of pages	8
Journal	Nature Biotechnology
Volume	26
Issue number	3
DOIs	https://doi.org/10.1038/nbt1391
Publication status	Published - 2008
Externally published	Yes

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10.1038/nbt1391

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Deutsch, E., Ball, C., Berman, J., Bova, S. G., Brazma, A., Bumgarner, R., Campbell, D., Causton, H., Christiansen, J., Daian, F., Dauga, D., Davidson, D., Gimenez, G., Goo, Y., Grimmond, S., Henrich, T., Herrmann, B., Johnson, M., Korb, M., ... True, L. (2008). Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nature Biotechnology, 26(3), 305 - 312. https://doi.org/10.1038/nbt1391

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title = "Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)",

abstract = "One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present reporting guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). MISFISHIE is modeled after the Minimum Information About a Microarray Experiment (MIAME) specification for microarray experiments. Both guidelines define what information should be reported without dictating a format for encoding that information. MISFISHIE describes six types of information to be provided for each experiment: experimental design, biomaterials and treatments, reporters, staining, imaging data and image characterizations. This specification has benefited the consortium within which it was developed and is expected to benefit the wider research community. We welcome feedback from the scientific community to help improve our proposal.",

author = "Eric Deutsch and Catherine Ball and Jules Berman and Bova, {Steven G} and Alvis Brazma and Roger Bumgarner and David Campbell and Helen Causton and Jeffrey Christiansen and Fabrice Daian and Delphone Dauga and Duncan Davidson and Gregory Gimenez and Young Goo and Sean Grimmond and Thorsten Henrich and Bernhard Herrmann and Michael Johnson and Martin Korb and Jason Mills and Asa Oudes and Helen Parkinson and Laura Pascal and Nicolas Pollet and John Quackenbush and Mirana Ramialison and Martin Ringwald and David Salgado and Susanna-Assunta Sansone and Gavin Sherlock and {Stoeckert Jnr}, Christian and Jason Swedlow and Ronald Taylor and Laura Walashek and Anthony Warford and David Wilkinson and Yi Zhou and Zon, {Leonard I} and Alvin Liu and Lawrence True",

year = "2008",

doi = "10.1038/nbt1391",

language = "English",

volume = "26",

pages = "305 -- 312",

journal = "Nature Biotechnology",

issn = "1087-0156",

publisher = "Nature Publishing Group",

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Deutsch, E, Ball, C, Berman, J, Bova, SG, Brazma, A, Bumgarner, R, Campbell, D, Causton, H, Christiansen, J, Daian, F, Dauga, D, Davidson, D, Gimenez, G, Goo, Y, Grimmond, S, Henrich, T, Herrmann, B, Johnson, M, Korb, M, Mills, J, Oudes, A, Parkinson, H, Pascal, L, Pollet, N, Quackenbush, J, Ramialison, M, Ringwald, M, Salgado, D, Sansone, S-A, Sherlock, G, Stoeckert Jnr, C, Swedlow, J, Taylor, R, Walashek, L, Warford, A, Wilkinson, D, Zhou, Y, Zon, LI, Liu, A & True, L 2008, 'Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)', Nature Biotechnology, vol. 26, no. 3, pp. 305 - 312. https://doi.org/10.1038/nbt1391

TY - JOUR

T1 - Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

AU - Deutsch, Eric

AU - Ball, Catherine

AU - Berman, Jules

AU - Bova, Steven G

AU - Brazma, Alvis

AU - Bumgarner, Roger

AU - Campbell, David

AU - Causton, Helen

AU - Christiansen, Jeffrey

AU - Daian, Fabrice

AU - Dauga, Delphone

AU - Davidson, Duncan

AU - Gimenez, Gregory

AU - Goo, Young

AU - Grimmond, Sean

AU - Henrich, Thorsten

AU - Herrmann, Bernhard

AU - Johnson, Michael

AU - Korb, Martin

AU - Mills, Jason

AU - Oudes, Asa

AU - Parkinson, Helen

AU - Pascal, Laura

AU - Pollet, Nicolas

AU - Quackenbush, John

AU - Ramialison, Mirana

AU - Ringwald, Martin

AU - Salgado, David

AU - Sansone, Susanna-Assunta

AU - Sherlock, Gavin

AU - Stoeckert Jnr, Christian

AU - Swedlow, Jason

AU - Taylor, Ronald

AU - Walashek, Laura

AU - Warford, Anthony

AU - Wilkinson, David

AU - Zhou, Yi

AU - Zon, Leonard I

AU - Liu, Alvin

AU - True, Lawrence

PY - 2008

Y1 - 2008

N2 - One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present reporting guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). MISFISHIE is modeled after the Minimum Information About a Microarray Experiment (MIAME) specification for microarray experiments. Both guidelines define what information should be reported without dictating a format for encoding that information. MISFISHIE describes six types of information to be provided for each experiment: experimental design, biomaterials and treatments, reporters, staining, imaging data and image characterizations. This specification has benefited the consortium within which it was developed and is expected to benefit the wider research community. We welcome feedback from the scientific community to help improve our proposal.

AB - One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present reporting guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). MISFISHIE is modeled after the Minimum Information About a Microarray Experiment (MIAME) specification for microarray experiments. Both guidelines define what information should be reported without dictating a format for encoding that information. MISFISHIE describes six types of information to be provided for each experiment: experimental design, biomaterials and treatments, reporters, staining, imaging data and image characterizations. This specification has benefited the consortium within which it was developed and is expected to benefit the wider research community. We welcome feedback from the scientific community to help improve our proposal.

UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18327244

U2 - 10.1038/nbt1391

DO - 10.1038/nbt1391

M3 - Article

SN - 1087-0156

VL - 26

SP - 305

EP - 312

JO - Nature Biotechnology

JF - Nature Biotechnology

IS - 3

ER -

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Abstract

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