Markov random field-based parcellation of the cerebral cortex: Application to histology images

Chris Adamson; Rhodri Davies; Terrie Inder; Sandra Rees; Iven Marcel; Gary Egan

Markov random field-based parcellation of the cerebral cortex: Application to histology images

Chris Adamson, Rhodri Davies, Terrie Inder, Sandra Rees, Iven Marcel, Gary Egan

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

Abstract

The cerebral cortex is composed of regions with distinct laminar structure. Functional neuroimaging results are often reported with respect to these regions, usually by reference to a standard brain "atlas". Motivated by the need for more precise atlases, this paper describes an algorithm that parcellates the cortex into regions of distinct laminar structure. The problem is cast into a segmentation framework and modelled using a Markov random field-based approach. An evaluation of the algorithm on histology images is presented. This technique is presented with a view to producing parcellations on 3D in-vivo magnetic resonance (MR) images of living human subjects.

Original language	English
Title of host publication	Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04
Editors	M. Palaniswami, B. Krishnamachari, A. Sowmya, S. Challa, M. Palaniswami, B. Krishnamachari, A. Sowmya, S. Challa
Pages	559-564
Number of pages	6
Publication status	Published - 1 Dec 2004
Externally published	Yes
Event	International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2004 - Melbourne, Australia Duration: 14 Dec 2004 → 17 Dec 2004 Conference number: 1st https://ieeexplore.ieee.org/xpl/conhome/9710/proceeding (Proceedings)

Conference

Conference	International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2004
Abbreviated title	ISSNIP 2004
Country/Territory	Australia
City	Melbourne
Period	14/12/04 → 17/12/04
Internet address	https://ieeexplore.ieee.org/xpl/conhome/9710/proceeding (Proceedings)

Cite this

Adamson, C., Davies, R., Inder, T., Rees, S., Marcel, I., & Egan, G. (2004). Markov random field-based parcellation of the cerebral cortex: Application to histology images. In M. Palaniswami, B. Krishnamachari, A. Sowmya, S. Challa, M. Palaniswami, B. Krishnamachari, A. Sowmya, & S. Challa (Eds.), Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04 (pp. 559-564)

Adamson, Chris ; Davies, Rhodri ; Inder, Terrie et al. / Markov random field-based parcellation of the cerebral cortex : Application to histology images. Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04. editor / M. Palaniswami ; B. Krishnamachari ; A. Sowmya ; S. Challa ; M. Palaniswami ; B. Krishnamachari ; A. Sowmya ; S. Challa. 2004. pp. 559-564

@inproceedings{2370632b2f394983a7d676039d86daf5,

title = "Markov random field-based parcellation of the cerebral cortex: Application to histology images",

abstract = "The cerebral cortex is composed of regions with distinct laminar structure. Functional neuroimaging results are often reported with respect to these regions, usually by reference to a standard brain {"}atlas{"}. Motivated by the need for more precise atlases, this paper describes an algorithm that parcellates the cortex into regions of distinct laminar structure. The problem is cast into a segmentation framework and modelled using a Markov random field-based approach. An evaluation of the algorithm on histology images is presented. This technique is presented with a view to producing parcellations on 3D in-vivo magnetic resonance (MR) images of living human subjects.",

author = "Chris Adamson and Rhodri Davies and Terrie Inder and Sandra Rees and Iven Marcel and Gary Egan",

year = "2004",

month = dec,

day = "1",

language = "English",

isbn = "0780388933",

pages = "559--564",

editor = "M. Palaniswami and B. Krishnamachari and A. Sowmya and S. Challa and M. Palaniswami and B. Krishnamachari and A. Sowmya and S. Challa",

booktitle = "Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04",

note = "International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2004, ISSNIP 2004 ; Conference date: 14-12-2004 Through 17-12-2004",

url = "https://ieeexplore.ieee.org/xpl/conhome/9710/proceeding",

}

Adamson, C, Davies, R, Inder, T, Rees, S, Marcel, I & Egan, G 2004, Markov random field-based parcellation of the cerebral cortex: Application to histology images. in M Palaniswami, B Krishnamachari, A Sowmya, S Challa, M Palaniswami, B Krishnamachari, A Sowmya & S Challa (eds), Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04. pp. 559-564, International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2004, Melbourne, Victoria, Australia, 14/12/04.

Markov random field-based parcellation of the cerebral cortex: Application to histology images. / Adamson, Chris; Davies, Rhodri; Inder, Terrie et al.
Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04. ed. / M. Palaniswami; B. Krishnamachari; A. Sowmya; S. Challa; M. Palaniswami; B. Krishnamachari; A. Sowmya; S. Challa. 2004. p. 559-564.

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

TY - GEN

T1 - Markov random field-based parcellation of the cerebral cortex

T2 - International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2004

AU - Adamson, Chris

AU - Davies, Rhodri

AU - Inder, Terrie

AU - Rees, Sandra

AU - Marcel, Iven

AU - Egan, Gary

N1 - Conference code: 1st

PY - 2004/12/1

Y1 - 2004/12/1

N2 - The cerebral cortex is composed of regions with distinct laminar structure. Functional neuroimaging results are often reported with respect to these regions, usually by reference to a standard brain "atlas". Motivated by the need for more precise atlases, this paper describes an algorithm that parcellates the cortex into regions of distinct laminar structure. The problem is cast into a segmentation framework and modelled using a Markov random field-based approach. An evaluation of the algorithm on histology images is presented. This technique is presented with a view to producing parcellations on 3D in-vivo magnetic resonance (MR) images of living human subjects.

AB - The cerebral cortex is composed of regions with distinct laminar structure. Functional neuroimaging results are often reported with respect to these regions, usually by reference to a standard brain "atlas". Motivated by the need for more precise atlases, this paper describes an algorithm that parcellates the cortex into regions of distinct laminar structure. The problem is cast into a segmentation framework and modelled using a Markov random field-based approach. An evaluation of the algorithm on histology images is presented. This technique is presented with a view to producing parcellations on 3D in-vivo magnetic resonance (MR) images of living human subjects.

UR - http://www.scopus.com/inward/record.url?scp=28844437983&partnerID=8YFLogxK

M3 - Conference Paper

AN - SCOPUS:28844437983

SN - 0780388933

SN - 9780780388932

SP - 559

EP - 564

BT - Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04

A2 - Palaniswami, M.

A2 - Krishnamachari, B.

A2 - Sowmya, A.

A2 - Challa, S.

A2 - Palaniswami, M.

A2 - Krishnamachari, B.

A2 - Sowmya, A.

A2 - Challa, S.

Y2 - 14 December 2004 through 17 December 2004

ER -

Adamson C, Davies R, Inder T, Rees S, Marcel I, Egan G. Markov random field-based parcellation of the cerebral cortex: Application to histology images. In Palaniswami M, Krishnamachari B, Sowmya A, Challa S, Palaniswami M, Krishnamachari B, Sowmya A, Challa S, editors, Proceedings of the 2004 Intelligent Sensors, Sensor Networks and Information Processing Conference, ISSNIP '04. 2004. p. 559-564

Markov random field-based parcellation of the cerebral cortex: Application to histology images

Abstract

Conference

Other files and links

Cite this