Geological three-dimensional (3D) models are constructed to reliably represent a given geological target. The reliability of a model is heavily dependent on the input data and is sensitive to uncertainty. This study examines the uncertainty introduced by geological orientation data by producing a suite of implicit 3d models generated from orientation measurements subjected to uncertainty simulations. The resulting uncertainty associated with different regions of the geological model can be located, quantified and visualised, providing a useful method to assess model reliability. The method is tested on a natural geological setting in the Gippsland Basin, southeastern Australia, where modelled geological surfaces are assessed for uncertainty. The concept of stratigraphic variability is introduced and analysis of the input data is performed using two uncertainty visualisation methods. Uncertainty visualisation through stratigraphic variability is designed to convey the complex concept of 3D model uncertainty to the geoscientist in an effective manner.