Large-scale biological sequence assembly and alignment by using computing grid

Wei Shi; Wanlei Zhou

doi:10.1007/978-3-540-24679-4_13

Large-scale biological sequence assembly and alignment by using computing grid

Wei Shi
, Wanlei Zhou

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

Abstract

Large-scale sequence assembly and alignment are fundamental parts of biological computing. However, most of the large-scale sequence assembly and alignment require intensive computing power and normally take very long time to complete. To speedup the assembly and alignment process, this paper parallelizes the Euler sequence assembly and pair-wise/multiple sequence assembly, two important sequence assembly methods, and takes advantage of Computing Grid which has a colossal computing capacity to meet the largescale biological computing demand.

Original language	English
Title of host publication	Grid and Cooperative Computing
Subtitle of host publication	Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I
Editors	Minglu Li, Qianni Deng, Xian-He Sun, Jun Ni
Place of Publication	Berline Germany
Publisher	Springer
Pages	26-33
Number of pages	8
Edition	1
ISBN (Electronic)	9783540246794
ISBN (Print)	9783540219880
DOIs	https://doi.org/10.1007/978-3-540-24679-4_13
Publication status	Published - 2004
Externally published	Yes
Event	International Workshop on Grid and Cooperative Computing 2003 - Shanhai, China Duration: 7 Dec 2003 → 10 Dec 2003

Publication series

Name	Lecture Notes in Computer Science
Publisher	Springer
Volume	3032
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	International Workshop on Grid and Cooperative Computing 2003
Abbreviated title	GCC
Country/Territory	China
City	Shanhai
Period	7/12/03 → 10/12/03

Access to Document

10.1007/978-3-540-24679-4_13

Cite this

Shi, W., & Zhou, W. (2004). Large-scale biological sequence assembly and alignment by using computing grid. In M. Li, Q. Deng, X.-H. Sun, & J. Ni (Eds.), Grid and Cooperative Computing: Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I (1 ed., pp. 26-33). (Lecture Notes in Computer Science; Vol. 3032). Springer. https://doi.org/10.1007/978-3-540-24679-4_13

Shi, Wei ; Zhou, Wanlei. / Large-scale biological sequence assembly and alignment by using computing grid. Grid and Cooperative Computing: Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I. editor / Minglu Li ; Qianni Deng ; Xian-He Sun ; Jun Ni. 1. ed. Berline Germany : Springer, 2004. pp. 26-33 (Lecture Notes in Computer Science).

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title = "Large-scale biological sequence assembly and alignment by using computing grid",

abstract = "Large-scale sequence assembly and alignment are fundamental parts of biological computing. However, most of the large-scale sequence assembly and alignment require intensive computing power and normally take very long time to complete. To speedup the assembly and alignment process, this paper parallelizes the Euler sequence assembly and pair-wise/multiple sequence assembly, two important sequence assembly methods, and takes advantage of Computing Grid which has a colossal computing capacity to meet the largescale biological computing demand.",

author = "Wei Shi and Wanlei Zhou",

note = "Publisher Copyright: {\textcopyright} Springer-Verlag Berlin Heidelberg 2004.; International Workshop on Grid and Cooperative Computing 2003, GCC ; Conference date: 07-12-2003 Through 10-12-2003",

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doi = "10.1007/978-3-540-24679-4\_13",

language = "English",

isbn = "9783540219880",

series = "Lecture Notes in Computer Science",

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Shi, W & Zhou, W 2004, Large-scale biological sequence assembly and alignment by using computing grid. in M Li, Q Deng, X-H Sun & J Ni (eds), Grid and Cooperative Computing: Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I. 1 edn, Lecture Notes in Computer Science, vol. 3032, Springer, Berline Germany , pp. 26-33, International Workshop on Grid and Cooperative Computing 2003, Shanhai, China, 7/12/03. https://doi.org/10.1007/978-3-540-24679-4_13

Large-scale biological sequence assembly and alignment by using computing grid. / Shi, Wei; Zhou, Wanlei.
Grid and Cooperative Computing: Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I. ed. / Minglu Li; Qianni Deng; Xian-He Sun; Jun Ni. 1. ed. Berline Germany : Springer, 2004. p. 26-33 (Lecture Notes in Computer Science; Vol. 3032).

Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

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AU - Zhou, Wanlei

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N2 - Large-scale sequence assembly and alignment are fundamental parts of biological computing. However, most of the large-scale sequence assembly and alignment require intensive computing power and normally take very long time to complete. To speedup the assembly and alignment process, this paper parallelizes the Euler sequence assembly and pair-wise/multiple sequence assembly, two important sequence assembly methods, and takes advantage of Computing Grid which has a colossal computing capacity to meet the largescale biological computing demand.

AB - Large-scale sequence assembly and alignment are fundamental parts of biological computing. However, most of the large-scale sequence assembly and alignment require intensive computing power and normally take very long time to complete. To speedup the assembly and alignment process, this paper parallelizes the Euler sequence assembly and pair-wise/multiple sequence assembly, two important sequence assembly methods, and takes advantage of Computing Grid which has a colossal computing capacity to meet the largescale biological computing demand.

UR - https://www.scopus.com/pages/publications/84957540872

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SN - 9783540219880

T3 - Lecture Notes in Computer Science

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BT - Grid and Cooperative Computing

A2 - Li, Minglu

A2 - Deng, Qianni

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PB - Springer

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T2 - International Workshop on Grid and Cooperative Computing 2003

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Shi W, Zhou W. Large-scale biological sequence assembly and alignment by using computing grid. In Li M, Deng Q, Sun XH, Ni J, editors, Grid and Cooperative Computing: Second International Workshop, GCC 2003 Shanhai, China, December 7–10, 2003 Revised Papers, Part I. 1 ed. Berline Germany : Springer. 2004. p. 26-33. (Lecture Notes in Computer Science). doi: 10.1007/978-3-540-24679-4_13

Large-scale biological sequence assembly and alignment by using computing grid

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