@inbook{c7faa753153d447eb647508ff80ead55,
title = "Genetic Analysis",
abstract = "Genetic analysis of sequence data is central to determining the evolutionary history and molecular epidemiology of viruses, particularly those such as infl uenza A virus that have complex ecosystems involving multiple hosts. Here we provide an outline of routine phylogenetic analyses of infl uenza A viruses including multiple sequence alignment, selecting the best-fi t evolutionary model and phylogenetic tree reconstruction using Neighbor joining, Maximum likelihood, and Bayesian inference. ",
keywords = "sequence alignment, phylogeny, evolution, natural selection, neighbour joining, maximum likelihood, bayesian inference",
author = "Smith, {Gavin J.D.} and Justin Bahl and Dhanasekaran Vijaykrishna",
year = "2012",
doi = "10.1007/978-1-61779-621-0_13",
language = "English",
isbn = "978-1-61779-620-3 ",
volume = "865",
series = "Methods in Molecular Biology",
publisher = "Springer",
pages = "207--227",
editor = "Yoshihiro Kawaoka and Gabriele Neumann",
booktitle = "Influenza virus",
}