Expression, purification, crystallization, and NMR studies of the helicase interaction domain of Escherichia coli DnaG primase

Karin Loscha, Aaron J. Oakley, Bogdan Bancia, Patrick M. Schaeffer, Pavel Prosselkov, Gottfried Otting, Matthew C.J. Wilce, Nicholas E. Dixon

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9 Citations (Scopus)

Abstract

In Escherichia coli, the DnaG primase is the RNA polymerase that synthesizes RNA primers at replication forks. It is composed of three domains, a small N-terminal zinc-binding domain, a larger central domain responsible for RNA synthesis, and a C-terminal domain comprising residues 434-581 [DnaG(434-581)] that interact with the hexameric DnaB helicase. Presumably because of this interaction, it had not been possible previously to express the C-terminal domain in a stably transformed E. coli strain. This problem was overcome by expression of DnaG(434-581) under control of tandem bacteriophage λ-promoters, and the protein was purified in yields of 4-6mg/L of culture and studied by NMR. A TOCSY spectrum of a 2mM solution of the protein at pH 7.0, indicated that its structured core comprises residues 444-579. This was consistent with sequence conservation among most-closely related primases. Linewidths in a NOESY spectrum of a 0.5 mM sample in 10 mM phosphate, pH 6.05, 0.1 M NaCl, recorded at 36°C, indicated the protein to be monomeric. Crystals of selenomethionine-substituted DnaG(434-581) obtained by the hanging-drop vapor-diffusion method were body-centered tetragonal, space group I4122, with unit cell parameters a = b = 142.2 Å, c = 192.1 Å, and diffracted beyond 2.7 Å resolution with synchrotron radiation.

Original languageEnglish
Pages (from-to)304-310
Number of pages7
JournalProtein Expression and Purification
Volume33
Issue number2
DOIs
Publication statusPublished - 1 Jan 2004
Externally publishedYes

Keywords

  • DNA replication
  • DnaB helicase
  • DnaG primase
  • Primase-helicase interaction
  • Protein structure

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