Etiology matters-Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy

Konrad J. Debski, Asla Pitkanen, Noora Puhakka, Anna M. Bot, Ishant Khurana, K. N. Harikrishnan, Mark Ziemann, Antony Kaspi, Assam El-Osta, Katarzyna Lukasiuk, Katja Kobow

Research output: Contribution to journalArticleResearchpeer-review

Abstract

This study tested the hypothesis that acquired epileptogenesis is accompanied by DNA methylation changes independent of etiology. We investigated DNA methylation and gene expression in the hippocampal CA3/dentate gyrus fields at 3 months following epileptogenic injury in three experimental models of epilepsy: focal amygdala stimulation, systemic pilocarpine injection, or lateral fluid-percussion induced traumatic brain injury (TBI) in rats. In the models studies, DNA methylation and gene expression profiles distinguished controls from injured animals. We observed consistent increased methylation in gene bodies and hypomethylation at non-genic regions. We did not find a common methylation signature in all three different models and few regions common to any two models. Our data provide evidence that genome-wide alteration of DNA methylation signatures is a general pathomechanism associated with epileptogenesis and epilepsy in experimental animal models, but the broad pathophysiological differences between models (i.e. pilocarpine, amygdala stimulation, and post-TBI) are reflected in distinct etiology-dependent DNA methylation patterns.

Original languageEnglish
Article number25668
Number of pages14
JournalScientific Reports
Volume6
DOIs
Publication statusPublished - 9 May 2016
Externally publishedYes

Cite this

Debski, K. J., Pitkanen, A., Puhakka, N., Bot, A. M., Khurana, I., Harikrishnan, K. N., ... Kobow, K. (2016). Etiology matters-Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy. Scientific Reports, 6, [25668]. https://doi.org/10.1038/srep25668
Debski, Konrad J. ; Pitkanen, Asla ; Puhakka, Noora ; Bot, Anna M. ; Khurana, Ishant ; Harikrishnan, K. N. ; Ziemann, Mark ; Kaspi, Antony ; El-Osta, Assam ; Lukasiuk, Katarzyna ; Kobow, Katja. / Etiology matters-Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy. In: Scientific Reports. 2016 ; Vol. 6.
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abstract = "This study tested the hypothesis that acquired epileptogenesis is accompanied by DNA methylation changes independent of etiology. We investigated DNA methylation and gene expression in the hippocampal CA3/dentate gyrus fields at 3 months following epileptogenic injury in three experimental models of epilepsy: focal amygdala stimulation, systemic pilocarpine injection, or lateral fluid-percussion induced traumatic brain injury (TBI) in rats. In the models studies, DNA methylation and gene expression profiles distinguished controls from injured animals. We observed consistent increased methylation in gene bodies and hypomethylation at non-genic regions. We did not find a common methylation signature in all three different models and few regions common to any two models. Our data provide evidence that genome-wide alteration of DNA methylation signatures is a general pathomechanism associated with epileptogenesis and epilepsy in experimental animal models, but the broad pathophysiological differences between models (i.e. pilocarpine, amygdala stimulation, and post-TBI) are reflected in distinct etiology-dependent DNA methylation patterns.",
author = "Debski, {Konrad J.} and Asla Pitkanen and Noora Puhakka and Bot, {Anna M.} and Ishant Khurana and Harikrishnan, {K. N.} and Mark Ziemann and Antony Kaspi and Assam El-Osta and Katarzyna Lukasiuk and Katja Kobow",
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Debski, KJ, Pitkanen, A, Puhakka, N, Bot, AM, Khurana, I, Harikrishnan, KN, Ziemann, M, Kaspi, A, El-Osta, A, Lukasiuk, K & Kobow, K 2016, 'Etiology matters-Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy' Scientific Reports, vol. 6, 25668. https://doi.org/10.1038/srep25668

Etiology matters-Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy. / Debski, Konrad J.; Pitkanen, Asla; Puhakka, Noora; Bot, Anna M.; Khurana, Ishant; Harikrishnan, K. N.; Ziemann, Mark; Kaspi, Antony; El-Osta, Assam; Lukasiuk, Katarzyna; Kobow, Katja.

In: Scientific Reports, Vol. 6, 25668, 09.05.2016.

Research output: Contribution to journalArticleResearchpeer-review

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