TY - JOUR
T1 - Deconvolution of the epigenetic age discloses distinct inter-personal variability in epigenetic aging patterns
AU - Shahal, Tamar
AU - Segev, Elad
AU - Konstantinovsky, Thomas
AU - Marcus, Yonit
AU - Shefer, Gabi
AU - Pasmanik-Chor, Metsada
AU - Buch, Assaf
AU - Ebenstein, Yuval
AU - Zimmet, Paul
AU - Stern, Naftali
N1 - Funding Information:
This research was funded by Sami and Tova Sagol.
Publisher Copyright:
© 2022, The Author(s).
PY - 2022/12
Y1 - 2022/12
N2 - Background: The epigenetic age can now be extrapolated from one of several epigenetic clocks, which are based on age-related changes in DNA methylation levels at specific multiple CpG sites. Accelerated aging, calculated from the discrepancy between the chronological age and the epigenetic age, has shown to predict morbidity and mortality rate. We assumed that deconvolution of epigenetic age to its components could shed light on the diversity of epigenetic, and by inference, on inter-individual variability in the causes of biological aging. Results: Using the Horvath original epigenetic clock, we identified several CpG sites linked to distinct genes that quantitatively explain much of the inter-personal variability in epigenetic aging, with CpG sites related to secretagogin and malin being the most variable. We show that equal epigenetic age in different subjects can result from variable contribution size of the same CpG sites to the total epigenetic age. In a healthy cohort, the most variable CpG sites are responsible for accelerated and decelerated epigenetic aging, relative to chronological age. Conclusions: Of the 353 CpG sites that form the basis for the Horvath epigenetic age, we have found the CpG sites that are responsible for accelerated and decelerated epigenetic aging in healthy subjects. However, the relative contribution of each site to aging varies between individuals, leading to variable personal aging patterns. Our findings pave the way to form personalized aging cards allowing the identification of specific genes related to CpG sites, as aging markers, and perhaps treatment of these targets in order to hinder undesirable age drifting.
AB - Background: The epigenetic age can now be extrapolated from one of several epigenetic clocks, which are based on age-related changes in DNA methylation levels at specific multiple CpG sites. Accelerated aging, calculated from the discrepancy between the chronological age and the epigenetic age, has shown to predict morbidity and mortality rate. We assumed that deconvolution of epigenetic age to its components could shed light on the diversity of epigenetic, and by inference, on inter-individual variability in the causes of biological aging. Results: Using the Horvath original epigenetic clock, we identified several CpG sites linked to distinct genes that quantitatively explain much of the inter-personal variability in epigenetic aging, with CpG sites related to secretagogin and malin being the most variable. We show that equal epigenetic age in different subjects can result from variable contribution size of the same CpG sites to the total epigenetic age. In a healthy cohort, the most variable CpG sites are responsible for accelerated and decelerated epigenetic aging, relative to chronological age. Conclusions: Of the 353 CpG sites that form the basis for the Horvath epigenetic age, we have found the CpG sites that are responsible for accelerated and decelerated epigenetic aging in healthy subjects. However, the relative contribution of each site to aging varies between individuals, leading to variable personal aging patterns. Our findings pave the way to form personalized aging cards allowing the identification of specific genes related to CpG sites, as aging markers, and perhaps treatment of these targets in order to hinder undesirable age drifting.
KW - Aging
KW - Diabetes mellitus
KW - DNA methylation
KW - Epigenetic age
KW - Epigenetic clock
KW - Personalized aging card
KW - Personalized medicine
UR - http://www.scopus.com/inward/record.url?scp=85125974798&partnerID=8YFLogxK
U2 - 10.1186/s13072-022-00441-y
DO - 10.1186/s13072-022-00441-y
M3 - Article
C2 - 35255955
AN - SCOPUS:85125974798
SN - 1756-8935
VL - 15
JO - Epigenetics and Chromatin
JF - Epigenetics and Chromatin
IS - 1
M1 - 9
ER -