@article{4a1b2183c3de46c0a8428394263ee785,
title = "Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer",
abstract = "Hippo signaling has been recognized as a key tumor suppressor pathway. Here, we perform a comprehensive molecular characterization of 19 Hippo core genes in 9,125 tumor samples across 33 cancer types using multidimensional “omic” data from The Cancer Genome Atlas. We identify somatic drivers among Hippo genes and the related microRNA (miRNA) regulators, and using functional genomic approaches, we experimentally characterize YAP and TAZ mutation effects and miR-590 and miR-200a regulation for TAZ. Hippo pathway activity is best characterized by a YAP/TAZ transcriptional target signature of 22 genes, which shows robust prognostic power across cancer types. Our elastic-net integrated modeling further reveals cancer-type-specific pathway regulators and associated cancer drivers. Our results highlight the importance of Hippo signaling in squamous cell cancers, characterized by frequent amplification of YAP/TAZ, high expression heterogeneity, and significant prognostic patterns. This study represents a systems-biology approach to characterizing key cancer signaling pathways in the post-genomic era. Wang et al. perform a comprehensive analysis of 19 Hippo core genes across 33 cancer types using multidimensional “omic” data from The Cancer Genome Atlas. They characterize Hippo pathway activity by a YAP/TAZ transcriptional target signature of 22 genes and highlight the importance of Hippo signaling in squamous cell cancers.",
keywords = "driver mutation, miRNA regulation, pan-cancer analysis, pathway activity, prognostic power, TAZ, TCGA, tumor subtype, YAP",
author = "Yumeng Wang and Xiaoyan Xu and Dejan Maglic and Dill, \{Michael T.\} and Kamalika Mojumdar and Ng, \{Kwok Shing\} and Jeong, \{Kang Jin\} and Tsang, \{Yiu Huen\} and Daniela Moreno and Bhavana, \{Venkata Hemanjani\} and Xinxin Peng and Zhongqi Ge and Hu Chen and Jun Li and Zhongyuan Chen and Huiwen Zhang and Leng Han and Di Du and Creighton, \{Chad J.\} and Mills, \{Gordon B.\} and Caesar-Johnson, \{Samantha J.\} and Demchok, \{John A.\} and Ina Felau and Melpomeni Kasapi and Ferguson, \{Martin L.\} and Hutter, \{Carolyn M.\} and Sofia, \{Heidi J.\} and Roy Tarnuzzer and Zhining Wang and Liming Yang and Zenklusen, \{Jean C.\} and Zhang, \{Jiashan (Julia)\} and Sudha Chudamani and Jia Liu and Laxmi Lolla and Rashi Naresh and Todd Pihl and Qiang Sun and Yunhu Wan and Ye Wu and Juok Cho and Timothy DeFreitas and Scott Frazer and Nils Gehlenborg and Gad Getz and Heiman, \{David I.\} and Jaegil Kim and Lawrence, \{Michael S.\} and Pei Lin and Sam Meier and Noble, \{Michael S.\} and Gordon Saksena and Doug Voet and Hailei Zhang and Brady Bernard and Nyasha Chambwe and Varsha Dhankani and Theo Knijnenburg and Roger Kramer and Kalle Leinonen and Yuexin Liu and Michael Miller and Sheila Reynolds and Ilya Shmulevich and Vesteinn Thorsson and Wei Zhang and Rehan Akbani and Broom, \{Bradley M.\} and Hegde, \{Apurva M.\} and Zhenlin Ju and Kanchi, \{Rupa S.\} and Anil Korkut and Jun Li and Shiyun Ling and Wenbin Liu and Yiling Lu and Ng, \{Kwok Shing\} and Arvind Rao and Michael Ryan and Jing Wang and Weinstein, \{John N.\} and Jiexin Zhang and Adam Abeshouse and Joshua Armenia and Debyani Chakravarty and Chatila, \{Walid K.\} and \{de Bruijn\}, Ino and Jianjiong Gao and Gross, \{Benjamin E.\} and Heins, \{Zachary J.\} and Ritika Kundra and Konnor La and Marc Ladanyi and Augustin Luna and Nissan, \{Moriah G.\} and Angelica Ochoa and Phillips, \{Sarah M.\} and Ed Reznik and Francisco Sanchez-Vega and Chris Sander and Nikolaus Schultz and Robert Sheridan and Sumer, \{S. Onur\} and Yichao Sun and Taylor, \{Barry S.\} and Jioajiao Wang and Hongxin Zhang and Pavana Anur and Myron Peto and Paul Spellman and Christopher Benz and Stuart, \{Joshua M.\} and Wong, \{Christopher K.\} and Christina Yau and Hayes, \{D. Neil\} and Parker, \{Joel S.\} and Wilkerson, \{Matthew D.\} and Adrian Ally and Miruna Balasundaram and Reanne Bowlby and Denise Brooks and Rebecca Carlsen and Eric Chuah and Noreen Dhalla and Robert Holt and Jones, \{Steven J.M.\} and Katayoon Kasaian and Darlene Lee and Yussanne Ma and Marra, \{Marco A.\} and Michael Mayo and Moore, \{Richard A.\} and Mungall, \{Andrew J.\} and Karen Mungall and Robertson, \{A. Gordon\} and Sara Sadeghi and Schein, \{Jacqueline E.\} and Payal Sipahimalani and Angela Tam and Nina Thiessen and Kane Tse and Tina Wong and Berger, \{Ashton C.\} and Rameen Beroukhim and Cherniack, \{Andrew D.\} and Carrie Cibulskis and Gabriel, \{Stacey B.\} and Gao, \{Galen F.\} and Gavin Ha and Matthew Meyerson and Schumacher, \{Steven E.\} and Juliann Shih and Kucherlapati, \{Melanie H.\} and Kucherlapati, \{Raju S.\} and Stephen Baylin and Leslie Cope and Ludmila Danilova and Bootwalla, \{Moiz S.\} and Lai, \{Phillip H.\} and Maglinte, \{Dennis T.\} and \{Van Den Berg\}, \{David J.\} and Weisenberger, \{Daniel J.\} and Auman, \{J. Todd\} and Saianand Balu and Tom Bodenheimer and Cheng Fan and Hoadley, \{Katherine A.\} and Hoyle, \{Alan P.\} and Jefferys, \{Stuart R.\} and Jones, \{Corbin D.\} and Shaowu Meng and Mieczkowski, \{Piotr A.\} and Mose, \{Lisle E.\} and Perou, \{Amy H.\} and Perou, \{Charles M.\} and Jeffrey Roach and Yan Shi and Simons, \{Janae V.\} and Tara Skelly and Soloway, \{Matthew G.\} and Donghui Tan and Umadevi Veluvolu and Huihui Fan and Toshinori Hinoue and Laird, \{Peter W.\} and Hui Shen and Wanding Zhou and Michelle Bellair and Kyle Chang and Kyle Covington and Huyen Dinh and Doddapaneni, \{Harsha Vardhan\} and Donehower, \{Lawrence A.\} and Jennifer Drummond and Gibbs, \{Richard A.\} and Robert Glenn and Walker Hale and Yi Han and Jianhong Hu and Viktoriya Korchina and Sandra Lee and Lora Lewis and Wei Li and Xiuping Liu and Margaret Morgan and Donna Morton and Donna Muzny and Jireh Santibanez and Margi Sheth and Eve Shinbrot and Linghua Wang and Min Wang and Wheeler, \{David A.\} and Liu Xi and Fengmei Zhao and Julian Hess and Appelbaum, \{Elizabeth L.\} and Matthew Bailey and Cordes, \{Matthew G.\} and Li Ding and Fronick, \{Catrina C.\} and Fulton, \{Lucinda A.\} and Fulton, \{Robert S.\} and Cyriac Kandoth and Mardis, \{Elaine R.\} and McLellan, \{Michael D.\} and Miller, \{Christopher A.\} and Schmidt, \{Heather K.\} and Wilson, \{Richard K.\} and Daniel Crain and Erin Curley and Johanna Gardner and Kevin Lau and David Mallery and Scott Morris and Joseph Paulauskis and Robert Penny and Candace Shelton and Troy Shelton and Mark Sherman and Eric Thompson and Peggy Yena and Jay Bowen and Gastier-Foster, \{Julie M.\} and Mark Gerken and Leraas, \{Kristen M.\} and Lichtenberg, \{Tara M.\} and Ramirez, \{Nilsa C.\} and Alex Boussioutas and \{The Cancer Genome Atlas Research Network\} and Camargo Fernando and Han Liang",
note = "Publisher Copyright: {\textcopyright} 2018 The Authors",
year = "2018",
month = oct,
day = "30",
doi = "10.1016/j.celrep.2018.10.001",
language = "English",
volume = "25",
pages = "1304--1317.e5",
journal = "Cell Reports",
issn = "2211-1247",
publisher = "Elsevier",
number = "5",
}