Beyond knockouts: cre resources for conditional mutagenesis

Stephen A Murray, Janan Eppig, Damian Smedley, Elizabeth M Simpson, Nadia Alicia Rosenthal

Research output: Contribution to journalArticleResearchpeer-review

35 Citations (Scopus)

Abstract

With the effort of the International Phenotyping Consortium to produce thousands of strains with conditional potential gathering steam, there is growing recognition that it must be supported by a rich toolbox of cre driver strains. The approaches to build cre strains have evolved in both sophistication and reliability, replacing first-generation strains with tools that can target individual cell populations with incredible precision and specificity. The modest set of cre drivers generated by individual labs over the past 15+ years is now growing rapidly, thanks to a number of large-scale projects to produce new cre strains for the community. The power of this growing resource, however, depends upon the proper deep characterization of strain function, as even the best designed strain can display a variety of undesirable features that must be considered in experimental design. This must be coupled with the parallel development of informatics tools to provide functional data to the user and facilitated access to the strains through public repositories. We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal.
Original languageEnglish
Pages (from-to)587 - 599
Number of pages13
JournalMammalian Genome
Volume23
Issue number9-10
DOIs
Publication statusPublished - 2012

Cite this

Murray, Stephen A ; Eppig, Janan ; Smedley, Damian ; Simpson, Elizabeth M ; Rosenthal, Nadia Alicia. / Beyond knockouts: cre resources for conditional mutagenesis. In: Mammalian Genome. 2012 ; Vol. 23, No. 9-10. pp. 587 - 599.
@article{3965f5d842ee4112846b7c9bf4c96623,
title = "Beyond knockouts: cre resources for conditional mutagenesis",
abstract = "With the effort of the International Phenotyping Consortium to produce thousands of strains with conditional potential gathering steam, there is growing recognition that it must be supported by a rich toolbox of cre driver strains. The approaches to build cre strains have evolved in both sophistication and reliability, replacing first-generation strains with tools that can target individual cell populations with incredible precision and specificity. The modest set of cre drivers generated by individual labs over the past 15+ years is now growing rapidly, thanks to a number of large-scale projects to produce new cre strains for the community. The power of this growing resource, however, depends upon the proper deep characterization of strain function, as even the best designed strain can display a variety of undesirable features that must be considered in experimental design. This must be coupled with the parallel development of informatics tools to provide functional data to the user and facilitated access to the strains through public repositories. We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal.",
author = "Murray, {Stephen A} and Janan Eppig and Damian Smedley and Simpson, {Elizabeth M} and Rosenthal, {Nadia Alicia}",
year = "2012",
doi = "10.1007/s00335-012-9430-2",
language = "English",
volume = "23",
pages = "587 -- 599",
journal = "Mammalian Genome",
issn = "0938-8990",
publisher = "Springer-Verlag London Ltd.",
number = "9-10",

}

Murray, SA, Eppig, J, Smedley, D, Simpson, EM & Rosenthal, NA 2012, 'Beyond knockouts: cre resources for conditional mutagenesis', Mammalian Genome, vol. 23, no. 9-10, pp. 587 - 599. https://doi.org/10.1007/s00335-012-9430-2

Beyond knockouts: cre resources for conditional mutagenesis. / Murray, Stephen A; Eppig, Janan; Smedley, Damian; Simpson, Elizabeth M; Rosenthal, Nadia Alicia.

In: Mammalian Genome, Vol. 23, No. 9-10, 2012, p. 587 - 599.

Research output: Contribution to journalArticleResearchpeer-review

TY - JOUR

T1 - Beyond knockouts: cre resources for conditional mutagenesis

AU - Murray, Stephen A

AU - Eppig, Janan

AU - Smedley, Damian

AU - Simpson, Elizabeth M

AU - Rosenthal, Nadia Alicia

PY - 2012

Y1 - 2012

N2 - With the effort of the International Phenotyping Consortium to produce thousands of strains with conditional potential gathering steam, there is growing recognition that it must be supported by a rich toolbox of cre driver strains. The approaches to build cre strains have evolved in both sophistication and reliability, replacing first-generation strains with tools that can target individual cell populations with incredible precision and specificity. The modest set of cre drivers generated by individual labs over the past 15+ years is now growing rapidly, thanks to a number of large-scale projects to produce new cre strains for the community. The power of this growing resource, however, depends upon the proper deep characterization of strain function, as even the best designed strain can display a variety of undesirable features that must be considered in experimental design. This must be coupled with the parallel development of informatics tools to provide functional data to the user and facilitated access to the strains through public repositories. We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal.

AB - With the effort of the International Phenotyping Consortium to produce thousands of strains with conditional potential gathering steam, there is growing recognition that it must be supported by a rich toolbox of cre driver strains. The approaches to build cre strains have evolved in both sophistication and reliability, replacing first-generation strains with tools that can target individual cell populations with incredible precision and specificity. The modest set of cre drivers generated by individual labs over the past 15+ years is now growing rapidly, thanks to a number of large-scale projects to produce new cre strains for the community. The power of this growing resource, however, depends upon the proper deep characterization of strain function, as even the best designed strain can display a variety of undesirable features that must be considered in experimental design. This must be coupled with the parallel development of informatics tools to provide functional data to the user and facilitated access to the strains through public repositories. We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal.

UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=22926223

U2 - 10.1007/s00335-012-9430-2

DO - 10.1007/s00335-012-9430-2

M3 - Article

VL - 23

SP - 587

EP - 599

JO - Mammalian Genome

JF - Mammalian Genome

SN - 0938-8990

IS - 9-10

ER -