Bandage: Interactive visualization of de novo genome assemblies

Ryan R. Wick, Mark B. Schultz, Justin Zobel, Kathryn E. Holt

Research output: Contribution to journalArticleOtherpeer-review

357 Citations (Scopus)

Abstract

Although de novo assembly graphs contain assembled contigs (nodes), the connections between those contigs (edges) are difficult for users to access. Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed within the Bandage graphical user interface and the hits are displayed as highlights in the graph. By displaying connections between contigs, Bandage presents new possibilities for analyzing de novo assemblies that are not possible through investigation of contigs alone.

Original languageEnglish
Pages (from-to)3350-3352
Number of pages3
JournalBioinformatics
Volume31
Issue number20
DOIs
Publication statusPublished - 25 Mar 2015
Externally publishedYes

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