Acidobacteria, rubrobacteridae and chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria

Kathryn Davis, Parveen Sangwan, Peter Janssen

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93 Citations (Scopus)

Abstract

P>Easily visible colonies of bacteria continued to form on plates inoculated with soil and incubated for 24 weeks. Using two different media, 13 and 29 of easily visible colonies appeared after more than 12 weeks. In addition, 10 and 18 of all colonies had diameters of 25-200 mu m (mini-colonies), which could not be readily seen with the unaided eye. Members of soil bacterial groups that are only rarely cultured, such as members of the subclass Rubrobacteridae of the phylum Actinobacteria, members of subdivisions 1 and 2 of the phylum Acidobacteria and members of three subphyla of the phylum Chloroflexi, were more abundant among the easily visible colonies and mini-colonies that developed after > 12 weeks of incubation. Our results indicate that there is a hidden culturable diversity of soil bacteria that may require laboratory study at colony sizes and incubation periods outside those commonly anticipated by most microbiologists. Working at these scales increases the likelihood of obtaining cultures from groups of soil bacteria that have generally eluded laboratory study by cultivation methods.
Original languageEnglish
Pages (from-to)798 - 805
Number of pages8
JournalEnvironmental Microbiology
Volume13
Issue number3
DOIs
Publication statusPublished - 2011
Externally publishedYes

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