TY - JOUR
T1 - A rotation and translation invariant method for 3D organ image classification using deep convolutional neural networks
AU - Islam, Kh Tohidul
AU - Wijewickrema, Sudanthi
AU - O'Leary, Stephen
N1 - Funding Information:
The authors would like to thank Dr. Bridget Copson of the Department of Medical Imaging at St. Vincent's Hospital, Melbourne, Australia, for her input on imaging techniques. This work was supported by the University of Melbourne under the Melbourne Research Scholarship (MRS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Funding Information:
This work was supported by the University of Melbourne under the Melbourne Research Scholarship (MRS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Publisher Copyright:
© 2019 Islam et al.
PY - 2019
Y1 - 2019
N2 - Three-dimensional (3D) medical image classification is useful in applications such as disease diagnosis and content-based medical image retrieval. It is a challenging task due to several reasons. First, image intensity values are vastly different depending on the image modality. Second, intensity values within the same image modality may vary depending on the imaging machine and artifacts may also be introduced in the imaging process. Third, processing 3D data requires high computational power. In recent years, significant research has been conducted in the field of 3D medical image classification. However, most of these make assumptions about patient orientation and imaging direction to simplify the problem and/or work with the full 3D images. As such, they perform poorly when these assumptions are not met. In this paper, we propose a method of classification for 3D organ images that is rotation and translation invariant. To this end, we extract a representative two-dimensional (2D) slice along the plane of best symmetry from the 3D image. We then use this slice to represent the 3D image and use a 20-layer deep convolutional neural network (DCNN) to perform the classification task. We show experimentally, using multi-modal data, that our method is comparable to existing methods when the assumptions of patient orientation and viewing direction are met. Notably, it shows similarly high accuracy even when these assumptions are violated, where other methods fail. We also explore how this method can be used with other DCNN models as well as conventional classification approaches.
AB - Three-dimensional (3D) medical image classification is useful in applications such as disease diagnosis and content-based medical image retrieval. It is a challenging task due to several reasons. First, image intensity values are vastly different depending on the image modality. Second, intensity values within the same image modality may vary depending on the imaging machine and artifacts may also be introduced in the imaging process. Third, processing 3D data requires high computational power. In recent years, significant research has been conducted in the field of 3D medical image classification. However, most of these make assumptions about patient orientation and imaging direction to simplify the problem and/or work with the full 3D images. As such, they perform poorly when these assumptions are not met. In this paper, we propose a method of classification for 3D organ images that is rotation and translation invariant. To this end, we extract a representative two-dimensional (2D) slice along the plane of best symmetry from the 3D image. We then use this slice to represent the 3D image and use a 20-layer deep convolutional neural network (DCNN) to perform the classification task. We show experimentally, using multi-modal data, that our method is comparable to existing methods when the assumptions of patient orientation and viewing direction are met. Notably, it shows similarly high accuracy even when these assumptions are violated, where other methods fail. We also explore how this method can be used with other DCNN models as well as conventional classification approaches.
KW - 3D Organ Image Classification
KW - Deep Learning
KW - Image Classification
KW - Medical Image Processing
KW - Symmetry
UR - http://www.scopus.com/inward/record.url?scp=85074001770&partnerID=8YFLogxK
U2 - 10.7717/peerj-cs.181
DO - 10.7717/peerj-cs.181
M3 - Article
C2 - 33816834
AN - SCOPUS:85074001770
SN - 2376-5992
VL - 5
JO - PeerJ Computer Science
JF - PeerJ Computer Science
M1 - e181
ER -