Abstract
Purpose: The mediator (MED) multisubunit-complex modulates the activity of the transcriptional machinery, and genetic defects in different MED subunits (17, 20, 27) have been implicated in neurologic diseases. In this study, we identified a recurrent homozygous variant in MED11 (c.325C>T; p.Arg109Ter) in 7 affected individuals from 5 unrelated families. Methods: To investigate the genetic cause of the disease, exome or genome sequencing were performed in 5 unrelated families identified via different research networks and Matchmaker Exchange. Deep clinical and brain imaging evaluations were performed by clinical pediatric neurologists and neuroradiologists. The functional effect of the candidate variant on both MED11 RNA and protein was assessed using reverse transcriptase polymerase chain reaction and western blotting using fibroblast cell lines derived from 1 affected individual and controls and through computational approaches. Knockouts in zebrafish were generated using clustered regularly interspaced short palindromic repeats/Cas9. Results: The disease was characterized by microcephaly, profound neurodevelopmental impairment, exaggerated startle response, myoclonic seizures, progressive widespread neurodegeneration, and premature death. Functional studies on patient-derived fibroblasts did not show a loss of protein function but rather disruption of the C-terminal of MED11, likely impairing binding to other MED subunits. A zebrafish knockout model recapitulates key clinical phenotypes. Conclusion: Loss of the C-terminal of MED subunit 11 may affect its binding efficiency to other MED subunits, thus implicating the MED-complex stability in brain development and neurodegeneration.
| Original language | English |
|---|---|
| Pages (from-to) | 2194-2203 |
| Number of pages | 10 |
| Journal | Genetics in Medicine |
| Volume | 24 |
| Issue number | 10 |
| DOIs | |
| Publication status | Published - Oct 2022 |
Keywords
- Human mediator complex
- MED11
- MEDopathies
Cite this
- APA
- Author
- BIBTEX
- Harvard
- Standard
- RIS
- Vancouver
}
In: Genetics in Medicine, Vol. 24, No. 10, 10.2022, p. 2194-2203.
Research output: Contribution to journal › Article › Research › peer-review
TY - JOUR
T1 - A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease
AU - Calì, Elisa
AU - Lin, Sheng Jia
AU - Rocca, Clarissa
AU - Sahin, Yavuz
AU - Al Shamsi, Aisha
AU - El Chehadeh, Salima
AU - Chaabouni, Myriam
AU - Mankad, Kshitij
AU - Galanaki, Evangelia
AU - Efthymiou, Stephanie
AU - Sudhakar, Sniya
AU - Athanasiou-Fragkouli, Alkyoni
AU - Çelik, Tamer
AU - Narlı, Nejat
AU - Bianca, Sebastiano
AU - Murphy, David
AU - De Carvalho Moreira, Francisco Martins
AU - Hannah, Michael G.
AU - Bugiardini, Enrico
AU - Kriouile, Yamna
AU - El Khorassani, Mohamed
AU - Aguennouz, Mhammed
AU - Groppa, Stanislav
AU - Karashova, Blagovesta Marinova
AU - Di Rosa, Gabriella
AU - Goraya, Jatinder S.
AU - Sultan, Tipu
AU - Avdjieva, Daniela
AU - Kathom, Hadil
AU - Tincheva, Radka
AU - Banu, Selina
AU - Veggiotti, Pierangelo
AU - Verrotti, Alberto
AU - Savasta, Salvatore
AU - Ruiz, Alfons Macaya
AU - Garavaglia, Barbara
AU - Borgione, Eugenia
AU - Papacostas, Savvas
AU - Compagnoni, Chiara
AU - Piccirilli, Alessandra
AU - Vikelis, Michail
AU - Chelban, Viorica
AU - Kaiyrzhanov, Rauan
AU - Cortese, Andrea
AU - Sullivan, Roisin
AU - Papanicolaou, Eleni Zamba
AU - Dardiotis, Efthymios
AU - Maqbool, Shazia
AU - Ibrahim, Shahnaz
AU - Kirmani, Salman
AU - Rana, Nuzhat Noureen
AU - Atawneh, Osama
AU - Lim, Shen Yang
AU - Shaikh, Farooq
AU - Scardamaglia, Annarita
AU - Koutsis, George
AU - Mangano, Salvatore
AU - Scuderi, Carmela
AU - Morello, Giovanna
AU - Zollo, Massimo
AU - Heimer, Gali
AU - Striano, Pasquale
AU - Al-Khawaja, Issam
AU - Al-Mutairi, Fuad
AU - Alkuraya, Fowzan S.
AU - Rizig, Mie
AU - Shashkin, Chingiz
AU - Zharkynbekova, Nazira
AU - Koneyev, Kairgali
AU - Manizha, Ganieva
AU - Isrofilov, Maksud
AU - Guliyeva, Ulviyya
AU - Salayev, Kamran
AU - Khachatryan, Samson
AU - Xiromerisiou, Georgia
AU - Spanaki, Cleanthe
AU - Tucci, Arianna
AU - Fiorillo, Chiara
AU - Rissotto, Federico
AU - Munell, Francina
AU - Gagliano, Antonella
AU - Jan, Farida
AU - Chimenz, Roberto
AU - Gitto, Eloisa
AU - Cuppari, Caterina
AU - Romeo, Carmelo
AU - Magrinelli, Francesca
AU - Gupta, Neerja
AU - Kabra, Madhulika
AU - Benrhouma, Hanene
AU - Tazir, Meriem
AU - Zagaroli, Luca
AU - Caloisi, Claudia
AU - Fabiano, Cecilia
AU - Bottone, Gabriella
AU - Farello, Giovanni
AU - Di Fabio, Sandra
AU - Obeid, Makram
AU - Bakhtadze, Sophia
AU - Saadi, Nebal W.
AU - Zaki, Maha S.
AU - Triki, Chahnez C.
AU - Kara, Majdi
AU - Belcastro, Vincenzo
AU - Specchio, Nicola
AU - Karimiani, Ehsan G.
AU - Salih, Ahmed M.
AU - Ramenghi, Luca A.
AU - David, Emanuele
AU - Curró, Riccardo
AU - Iezzi, Maria Laura
AU - Iapadre, Giulia
AU - Nanni, Giuliana
AU - Scorrano, Giovanna
AU - Fiorile, Maria F.
AU - Brancati, Francesco
AU - Di Falco, Giovanna
AU - Mandarà, Luana
AU - Barrano, Giuseppe
AU - Elia, Maurizio
AU - Terrone, Gaetano
AU - Operto, Francesca F.
AU - Valenzise, Mariella
AU - Della Rocca, Ylenia
AU - Zazzeroni, Francesca
AU - Alesse, Edoardo
AU - Manti, Filippo
AU - Galosi, Serena
AU - Nardecchia, Francesca
AU - Leuzzi, Vincenzo
AU - Pironti, Erica
AU - Amore, Greta
AU - Ceravolo, Giorgia
AU - Zafar, Faisal
AU - Ullah, Ehsan
AU - Afzal, Erum
AU - Javed, Iram
AU - Rahman, Fatima
AU - Ahmed, Muhammad Mehboob
AU - Parisi, Pasquale
AU - Borgia, Paola
AU - Mangano, Giuseppe D.
AU - Chiarelli, Francesco
AU - Genomics, Queen Square
AU - Andrea Accogli, Accogli
AU - Petree, Cassidy
AU - Huang, Kevin
AU - Monastiri, Kamel
AU - Edizadeh, Masoud
AU - Nardello, Rosaria
AU - Ognibene, Marzia
AU - De Marco, Patrizia
AU - Ruggieri, Martino
AU - Zara, Federico
AU - Şahin, Yavuz
AU - Al-Gazali, Lihadh
AU - Abi Warde, Marie Therese
AU - Gerard, Benedicte
AU - Zifarelli, Giovanni
AU - Beetz, Christian
AU - Fortuna, Sara
AU - Soler, Miguel
AU - Valente, Enza Maria
AU - Varshney, Gaurav
AU - Maroofian, Reza
AU - Salpietro, Vincenzo
AU - Houlden, Henry
AU - SYNAPS Study Group
N1 - Funding Information: We gratefully acknowledge all the families for their enthusiastic participation in this study. This study was supported by the Wellcome Trust (WT093205MA and WT104033AIA), Medical Research Council (H.H.), and European Community's Seventh Framework Programme (FP7/2007-2013, under grant agreement number 2012-305121 to H.H.). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. We acknowledge the CINECA awards N. HP10BTJPER, 2017 (to S.F. and M.S.), for the availability of high-performance computing resources and support. We are also supported by the NIHR University College London Hospitals Biomedical Research Centre. Conceptualization: E.C. C.R. G.V. R.M. V.S. H.H.; Data Curation: E.C. V.S.; Formal Analysis: E.C.; Funding Acquisition: H.H.; Investigation, Computational Methods: S.F. M.S.; Patient Recruitment, Clinical and Diagnostic Evaluations: Synapse Study Group, Queen Square Genomics, Y.S. A.A.S. M.C. S.E.C. T.C. N.N. S.B. A.A. K.M. M.E. R.N. M.O. P.D.M. M.R. F.Z. P.S. Y.S. L.A.-G. M.T.A.B.W. G.Z. C.B. B.G. E.M.V.; Methodology: E.C. S.-J.L. C.R. K.M. E.G. S.E. S.S. D.M. G.V. A.A.-F. C.P. K.H. S.F. F.M.D.C.M. M.S.; Supervision: R.M. V.S. H.H.; Writing-original draft: E.C. S.-J.L. V.S.; Writing-review and editing: E.C. S.-J.L. C.R. Y.S. A.A.S. S.E.C. M.C. K.M. E.G. S.E. S.S. A.A.-F. T.C. N.N. S.B. D.B. F.M.D.C.M. Synapse Study Group, Queen Square Genomics, A.A. C.P. K.H. K.M. M.E. R.N. M.O. P.D.M. M.R. F.Z. P.S. Y.Ş. L.A.-G. M.T.A.W. B.G. G.Z. C.B. S.F. M.S. E.M.V. G.V. R.M. V.S. H.H. Individuals (and/or their legal guardians) recruited in a research setting gave informed consent for their research participation. Those individual research studies received approval from the Review Boards and Bioethics Committees at University College London Hospital (project 06/N076) and the other institutions involved in this study. Permission for inclusion of their anonymized medical data in this cohort, including photographs, was obtained using standard forms at each local site by the responsible referring physicians. For zebrafish experiments, the study protocol was approved by the Institutional Animal Care and Use Committee of Oklahoma Medical Research Foundation, protocol 20-07. Funding Information: This study was supported by the Wellcome Trust (WT093205MA and WT104033AIA), Medical Research Council (H.H.), and European Community’s Seventh Framework Programme ( FP7 /2007-2013, under grant agreement number 2012-305121 to H.H.). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission. We acknowledge the CINECA awards N. HP10BTJPER, 2017 (to S.F. and M.S.), for the availability of high-performance computing resources and support. We are also supported by the NIHR University College London Hospitals Biomedical Research Centre . Publisher Copyright: © 2022 The Authors
PY - 2022/10
Y1 - 2022/10
N2 - Purpose: The mediator (MED) multisubunit-complex modulates the activity of the transcriptional machinery, and genetic defects in different MED subunits (17, 20, 27) have been implicated in neurologic diseases. In this study, we identified a recurrent homozygous variant in MED11 (c.325C>T; p.Arg109Ter) in 7 affected individuals from 5 unrelated families. Methods: To investigate the genetic cause of the disease, exome or genome sequencing were performed in 5 unrelated families identified via different research networks and Matchmaker Exchange. Deep clinical and brain imaging evaluations were performed by clinical pediatric neurologists and neuroradiologists. The functional effect of the candidate variant on both MED11 RNA and protein was assessed using reverse transcriptase polymerase chain reaction and western blotting using fibroblast cell lines derived from 1 affected individual and controls and through computational approaches. Knockouts in zebrafish were generated using clustered regularly interspaced short palindromic repeats/Cas9. Results: The disease was characterized by microcephaly, profound neurodevelopmental impairment, exaggerated startle response, myoclonic seizures, progressive widespread neurodegeneration, and premature death. Functional studies on patient-derived fibroblasts did not show a loss of protein function but rather disruption of the C-terminal of MED11, likely impairing binding to other MED subunits. A zebrafish knockout model recapitulates key clinical phenotypes. Conclusion: Loss of the C-terminal of MED subunit 11 may affect its binding efficiency to other MED subunits, thus implicating the MED-complex stability in brain development and neurodegeneration.
AB - Purpose: The mediator (MED) multisubunit-complex modulates the activity of the transcriptional machinery, and genetic defects in different MED subunits (17, 20, 27) have been implicated in neurologic diseases. In this study, we identified a recurrent homozygous variant in MED11 (c.325C>T; p.Arg109Ter) in 7 affected individuals from 5 unrelated families. Methods: To investigate the genetic cause of the disease, exome or genome sequencing were performed in 5 unrelated families identified via different research networks and Matchmaker Exchange. Deep clinical and brain imaging evaluations were performed by clinical pediatric neurologists and neuroradiologists. The functional effect of the candidate variant on both MED11 RNA and protein was assessed using reverse transcriptase polymerase chain reaction and western blotting using fibroblast cell lines derived from 1 affected individual and controls and through computational approaches. Knockouts in zebrafish were generated using clustered regularly interspaced short palindromic repeats/Cas9. Results: The disease was characterized by microcephaly, profound neurodevelopmental impairment, exaggerated startle response, myoclonic seizures, progressive widespread neurodegeneration, and premature death. Functional studies on patient-derived fibroblasts did not show a loss of protein function but rather disruption of the C-terminal of MED11, likely impairing binding to other MED subunits. A zebrafish knockout model recapitulates key clinical phenotypes. Conclusion: Loss of the C-terminal of MED subunit 11 may affect its binding efficiency to other MED subunits, thus implicating the MED-complex stability in brain development and neurodegeneration.
KW - Human mediator complex
KW - MED11
KW - MEDopathies
UR - https://www.scopus.com/pages/publications/85136518302
U2 - 10.1016/j.gim.2022.07.013
DO - 10.1016/j.gim.2022.07.013
M3 - Article
C2 - 36001086
AN - SCOPUS:85136518302
SN - 1098-3600
VL - 24
SP - 2194
EP - 2203
JO - Genetics in Medicine
JF - Genetics in Medicine
IS - 10
ER -