Projects per year
Personal profile
Biography
Dr Yun Shi is an ARC DECRA Fellow and an NHMRC Investigator (Emerging Leadership) with multiple high-impact publications in journals such as Science, Molecular Cell, and Nature Communications. He integrates biophysical, biochemical, structural, and computational approaches to investigate protein-ligand interactions and guide drug discovery for neurodegenerative, inflammatory, and infectious diseases.
Dr Shi obtained his PhD in Chemistry from Simon Fraser University (Canada) and undertook his postdoctoral training at Griffith University. Supported by a Griffith University Postdoctoral Fellowship (2016-2018), he established a fragment-based drug discovery platform using nuclear magnetic resonance (NMR) spectroscopy as the primary technique. His work contributed to industry drug-discovery programs with Disarm Therapeutics Inc and Eli Lilly & Co (2019-2023). In 2025, Dr Shi relocated to Monash University to esatblish his independent research program. His current research focuses on fragment-based drug design, molecular functions of nicotinamide adenine dinucleotide (NAD+) metabolites, and reprogramming of nucleotide-signalling pathways for therapeutic impact.
Research interests
- Fragment-based ligand discovery against neurodegeneration
- Discovery of new metabolite-protein interactions for neuroprotection
- Hijacking nucleotide immune signalling to treat neuroinflammation
- Discovery of substrate-coupled inhibitors to counter bacterial infections
- Discovery of targetted protein degraders for neuroprotection
- Computational drug design combining data-centric and physics-centric approaches
Please visit the group website for further information.
Supervision interests
Available to supervise PhD, Masters by Research, and Honours students.
Education/Academic qualification
Chemistry, Doctor of Philosophy, Simon Fraser University
1 Sept 2010 → 19 May 2015
Award Date: 19 May 2015
External positions
Adjunct Senior Research Fellow, Griffith University
1 Nov 2025 → …
Research area keywords
- Metabolite Signalling
- Fragment-Based Drug Design
- Metabolites
- Small-Molecule Inhibitor
- NMR spectroscopy
- Bioactive Compounds
- Molecular Modeling
- Enzyme Kinetics
- Protein-Ligand Interactions
- NAD+
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
-
SDG 3 Good Health and Well-being
-
SDG 4 Quality Education
Collaborations and top research areas from the last five years
Projects
- 2 Active
-
Molecular Functions of Nicotinamide Adenine Dinucleotide Metabolites
Shi, Y. (Primary Chief Investigator (PCI))
1/01/25 → 31/12/27
Project: Research
-
Molecular characterisation of NMNAT2 activity and regulation for neuroprotection
Shi, Y. (Primary Chief Investigator (PCI))
1/01/25 → 31/12/29
Project: Research
-
Chemical inhibition of a bacterial immune system
Zang, Z., Duncan, O. K., Sabonis, D., Fedorova, I., Shi, Y., Miraj, G., Le, S., Deng, J., Zhu, Y., Cai, Y., Zhang, C., Arya, G., Dixon, S. A. H., Angus, S. P., Duerkop, B. A., Liang, H., Pepin, R. H., Ve, T., Bondy-Denomy, J. & Tamulaitiene, G. & 1 others, , 11 Feb 2026, In: Cell Host & Microbe. 34, 2, p. 263-277.e11 26 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access5 Link opens in a new tab Citations (Scopus) -
Reaction hijacking of enzymes to generate potent therapeutic modulators in situ
Xie, S. C., Shi, Y., Kobe, B., Morton, C. J. & Tilley, L., May 2026, In: Trends in Biochemical Sciences. 51, 5, p. 439-456 18 p.Research output: Contribution to journal › Review Article › Research › peer-review
Open Access -
Editorial: The role of negative immune checkpoints in the treatment of systemic lupus erythematosus and rheumatoid arthritis
Li, J., Liu, J., Dai, L., Wang, X. & Shi, Y., 11 Mar 2025, In: Frontiers in Immunology. 16, 2 p., 1582125.Research output: Contribution to journal › Editorial › Other › peer-review
Open Access1 Link opens in a new tab Citation (Scopus) -
Molecular characterisation of the Bacillus subtilis SpbK antiphage defence system
Mishra, B. P., Loyo, C. L., Cai, Y., Litfin, T., Miraj, G., Brillault, L., Masic, V., Mosaiab, T., Rajaratnam, P., Rudrawar, S., Gu, W., Kobe, B., Gerdt, J. P., Grossman, A. D., Shi, Y. & Ve, T., 29 Dec 2025, In: Nature Communications. 17, 1, 16 p., 1051.Research output: Contribution to journal › Article › Research › peer-review
Open Access1 Link opens in a new tab Citation (Scopus) -
SARM1-Dependent Axon Degeneration: Nucleotide Signaling, Neurodegenerative Disorders, Toxicity, and Therapeutic Opportunities
McGuinness, H. Y., Gu, W., Shi, Y., Kobe, B. & Ve, T., Aug 2024, In: The Neuroscientist. 30, 4, p. 473-492 20 p.Research output: Contribution to journal › Review Article › Research › peer-review
Open Access25 Link opens in a new tab Citations (Scopus)