20092020

Research output per year

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Personal profile

Research area keywords

  • Genome-Scale Metabolic Modelling
  • Virtual Cell Modelling
  • Systems Pharmacology
  • Polymyxin

Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output

Complete genome sequence and genome-scale metabolic modelling of Acinetobacter baumannii type strain ATCC 19606

Zhu, Y., Lu, J., Zhao, J., Zhang, X., Yu, H. H., Velkov, T. & Li, J., Apr 2020, In : International Journal of Medical Microbiology. 310, 3, 11 p., 151412.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Chen, Z., Zhao, P., Li, F., Marquez-Lago, T. T., Leier, A., Revote, J., Zhu, Y., Powell, D. R., Akutsu, T., Webb, G. I., Chou, K-C., Smith, A. I., Daly, R. J., Li, J. & Song, J., 21 May 2020, In : Briefings in Bioinformatics. 21, 3, p. 1047-1057 11 p., bbz041.

Research output: Contribution to journalArticleResearchpeer-review

14 Citations (Scopus)

Metabolomics Study of the Synergistic Killing of Polymyxin B in Combination with Amikacin against Polymyxin-Susceptible and -Resistant Pseudomonas aeruginosa

Hussein, M., Han, M-L., Zhu, Y., Zhou, Q. T., Lin, Y-W., Hancock, R. E. W., Hoyer, D., Creek, D. J., Li, J. & Velkov, T., Jan 2020, In : Antimicrobial Agents and Chemotherapy. 64, 1, 16 p., e01587-19.

Research output: Contribution to journalArticleResearchpeer-review

Pan-transcriptomic analysis identified common differentially expressed genes of Acinetobacter baumannii in response to polymyxin treatments

Li, M., Aye, S. M., Ahmed, M. U., Han, M-L., Li, C., Song, J., Boyce, J. D., Powell, D. R., Azad, M. A. K., Velkov, T., Zhu, Y. & Li, J., 22 May 2020, (Accepted/In press) In : Molecular Omics. 12 p.

Research output: Contribution to journalArticleResearchpeer-review

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact

Li, F., Fan, C., Marquez-Lago, T. T., Leier, A., Revote, J., Jia, C., Zhu, Y., Smith, A. I., Webb, G. I., Liu, Q., Wei, L., Li, J. & Song, J., 21 May 2020, In : Briefings in Bioinformatics. 21, 3, p. 1069-1079 11 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Activities

Virtual cell modelling of Pseudomonas aeruginosa PAO1

Yan Zhu (Speaker)

2017

Activity: Participating in or organising an event typesContribution to workshop, seminar, course

13th Annual Conference of the Metabolomics Society (Metabolomics 2017)

Yan Zhu (Speaker)

2017

Activity: Participating in or organising an event typesContribution to conference

International Journal of Antimicrobial Agents (Journal)

Yan Zhu (Peer reviewer)

2017

Activity: Publication peer-review and editorial work typesPeer review responsibility

Vienna

Yan Zhu (Speaker)

2017

Activity: Participating in or organising an event typesContribution to conference

Biochimica et Biophysica Acta - Biomembranes (Journal)

Yan Zhu (Peer reviewer)

2017

Activity: Publication peer-review and editorial work typesPeer review responsibility