Projects per year
Personal profile
Biography
Dr Wei Yee Wee received his B.Sc. in Bioinformatics from Multimedia University (MMU) in 2012. After graduation, he continue with his Ph.D in Bioinformatics in University of Malaya and continue to work as Post Doctoral Research Fellow under Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya after he gained his Ph.D. He has gained many years of experience in the field of bioinformatics research. Currently, he is an assistant lecturer in the School of Sciences and engages in education and research through contribution to multidisciplinary research projects, research funding and research publication in ISI Journals. He has a proven record in publication and published around 24 high impact papers since 2012. He has also take part in setup, design, establishment and maintenance of new bioinformatics laboratory.
Dr Wei Yee Wee has been involved in variety of Next Generation Sequencing (NGS) projects such as whole genome and transcriptome analysis on eukaryotic genomes, bacteria genome and metagenomics. He is familiar with Bioinformatics analysis such as genome assembly, genome annotation, genes comparative study, identification of SNP variants and prediction on the effect of the SNP variants, differential gene expression analysis, pan-genome analysis, phylogenetic tree analysis, prophage identification. He also develop useful Bioinformatics tools and pipelines such as the Pairwise Genome Comparison (PGC) and the Pathogenomics Profilling Tool (PathoProT). PGC is a bioinformatics tool which allow user to perform pairwise genome alignment and visualize the alignment in a circular layout and PathoProT allow user to screen for virulence genes in the genome. These 2 tools have been implemented and integrated into few published database such as VibrioBase and HelicoBase.
Dr Wei Yee Wee current research projects are the whole genome analysis of Mycobacterium cosmeticum and transcriptomic analysis of Bosenbergia rotunda.
Research interests
Bioinformatics related research project. I am interested in a variety of Next Generation Sequencing (NGS) projects such as whole genome and transcriptome analysis on eukaryotic genomes, bacteria genome and metagenomics. Bioinformatics analysis such as genome assembly, genome annotation, genes comparative study, identification of SNP variants and prediction on the effect of the SNP variants, differential gene expression analysis, pan-genome analysis, phylogenetic tree analysis, prophage identification will able to further characterize and unveil more novel biological knowledge by using just dry lab instead of wet lab. I am also interested in developing Bioinformatics tools and pipelines which will allow researcher without Bioinformatics knowledge to have a chance to perform Bioinformatics analysis easily.
Monash teaching commitment
- BIO1011 Biology 1
- SCI1020 Introduction ot Statistics
- GEN2052
- STA2216
- BIN3800
- BIN3890
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Bioinformatics, PhD
Bioinformatics, Bachelor of Science
Research area keywords
- Bioinformatics
Collaborations and top research areas from the last five years
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Charting a Path for Sustainable Conservation of Malaysian Wild Rice
Wei Yee, W. (Primary Chief Investigator (PCI)), Beng Kah, S. (Chief Investigator (CI)), Sudo, M. P. S. (Chief Investigator (CI)) & Dilipkumar, M. (Chief Investigator (CI))
1/12/24 → 30/11/25
Project: Research
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Investigating the Effectiveness of H5P Interactive Content in Teaching a Second Year Statistics Unit (STA2216)
Hasan, M. Z. (Primary Chief Investigator (PCI)), Wei Yee, W. (Chief Investigator (CI)) & Roh, S. (Chief Investigator (CI))
1/12/22 → 15/12/23
Project: Research
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Assessment and monitoring of Malaysian freshwater biodiversity using traditional surveys and environmental DNA
Wei Yee, W. (Primary Chief Investigator (PCI)), Barclay, H. (Chief Investigator (CI)), Nurhidayu, S. (Chief Investigator (CI)), Rahman, S. (Chief Investigator (CI)), Bin Mohmad @ Fikri, A. H. (Chief Investigator (CI)), Beng Kah, S. (Chief Investigator (CI)) & Ayub, Q. (Chief Investigator (CI))
1/09/19 → 31/05/24
Project: Research
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Host-pathogen Genetics in Orang Asli Individuals Infected with Intestinal Nematodes.
Ayub, Q. (Primary Chief Investigator (PCI)), Lim, Y. A. L. (Chief Investigator (CI)), Chow, S. C. (Chief Investigator (CI)), Phipps, M. (Chief Investigator (CI)) & Wei Yee, W. (Chief Investigator (CI))
1/01/19 → 31/03/23
Project: Research
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Screening of heat stress-tolerant weedy rice and SNP identification of heat-tolerance-related genes
Sarker, M. H., Hussain, M. H., Neik, T. X., Hasan, M. Z., Wee, W. Y., Tan, H. S., Ko, S. S. & Song, B. K., Sept 2024, In: Plant Biotechnology Reports. 18, 5, p. 659–672 14 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access4 Citations (Scopus) -
Genome characterization and taxonomy of Actinomyces acetigenes sp. nov., and Actinomyces stomatis sp. nov., previously isolated from the human oral cavity
Tian, X., Teo, W. F. A., Wee, W. Y., Yang, Y., Ahmed, H., Jakubovics, N. S., Choo, S. W. & Tan, G. Y. A., Dec 2023, In: BMC Genomics. 24, 1, 15 p., 734.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile2 Citations (Scopus) -
A collective statement in support of saving pangolins
Choo, S. W., Chong, J. L., Gaubert, P., Hughes, A. C., O'Brien, S., Chaber, A. L., Antunes, A., Platto, S., Sun, N. C. M., Yu, L., Koepfli, K. P., Suwal, T. L., Thakur, M., Ntie, S., Panjang, E., Kumaran, J. V., Mahmood, T., Heighton, S. P., Dorji, D. & Gonedelé, B. S. & 45 others, , 10 Jun 2022, In: Science of the Total Environment. 824, 8 p., 153666.Research output: Contribution to journal › Letter › Other › peer-review
Open AccessFile6 Citations (Scopus) -
Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (Boesenbergia rotunda)
Taheri, S., Teo, C. H., Heslop-Harrison, J. S., Schwarzacher, T., Tan, Y. S., Wee, W. Y., Khalid, N., Biswas, M. K., Mutha, N. V. R., Mohd-Yusuf, Y., Gan, H. M. & Harikrishna, J. A., Jul 2022, In: International Journal of Molecular Sciences. 23, 13, 26 p., 7269.Research output: Contribution to journal › Article › Research › peer-review
Open Access9 Citations (Scopus) -
Phylogenomic analysis of Pseudomonas nitroreducens strains FY43 and FY47
Tan, X. L., Wee, W. Y., Tan, B. C. & Teo, C. H., 2022, In: Asia Pacific Journal of Molecular Biology and Biotechnology. 30, 1, p. 1-11 11 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access1 Citation (Scopus)
Prizes
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2024 PVC's Award for Excellence in Education
Wei Yee, W. (Recipient), 2024
Prize: Prize (including medals and awards)
File -
Bronze Medal (Education Category): Virtual HITeL Teaching and Learning Innovation Competition (INNOVATORS2022)
Hasan, M. Z. (Recipient), Wei Yee, W. (Recipient), Lim, C. (Recipient) & Chui Yi, C. (Recipient), 2022
Prize: Prize (including medals and awards)
File -
Gold Medal (Education Category): 31st International, Invention, Innovation & Technology Exhibition in Malaysia (ITEX’20)
Wei Yee, W. (Recipient), Hasan, M. Z. (Recipient) & Seow Mun, H. (Recipient), 2020
Prize: Prize (including medals and awards)
File -
Gold Medal (Education Category): Virtual HITeL Teaching and Learning Innovation Competition (INNOVATORS2022)
Wei Yee, W. (Recipient), Hasan, M. Z. (Recipient), Seow Mun, H. (Recipient) & Ayub, Q. (Recipient), 19 Jul 2022
Prize: Prize (including medals and awards)
File -
The Dean's Award for Innovation in Learning and Teaching
Wei Yee, W. (Recipient), 2024
Prize: Prize (including medals and awards)
File
Activities
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mSystems (Journal)
Wei Yee, W. (Editor in chief)
1 Oct 2024 → 30 Nov 2024Activity: Publication peer-review and editorial work types › Peer review responsibility
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Learnux - The Ultimate Linux Board Game
Wee Wei Yee (Organiser)
4 Jul 2024 → …Activity: Participating in or organising an event types › Contribution to workshop, seminar, course
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Mufy Immersion Day
Wee Wei Yee (Organiser)
15 Apr 2024 → …Activity: Participating in or organising an event types › Contribution to workshop, seminar, course
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Wellcome Connecting Science: Next Generation Sequencing Bioinformatics - Asia 2024
Wee Wei Yee (Organiser)
3 Nov 2024 → 8 Nov 2024Activity: Participating in or organising an event types › Contribution to workshop, seminar, course
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School of Science Education of Forum
Wee Wei Yee (Contributor)
Apr 2023Activity: Community Talks, Presentations, Exhibitions and Events › Public lecture/debate/seminar