Projects per year
Personal profile
Biography
Dr Wei Yee Wee received his B.Sc. in Bioinformatics from Multimedia University (MMU) in 2012. After graduation, he continue with his Ph.D in Bioinformatics in University of Malaya and continue to work as Post Doctoral Research Fellow under Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya after he gained his Ph.D. He has gained many years of experience in the field of bioinformatics research. Currently, he is an assistant lecturer in the School of Sciences and engages in education and research through contribution to multidisciplinary research projects, research funding and research publication in ISI Journals. He has a proven record in publication and published around 24 high impact papers since 2012. He has also take part in setup, design, establishment and maintenance of new bioinformatics laboratory.
Dr Wei Yee Wee has been involved in variety of Next Generation Sequencing (NGS) projects such as whole genome and transcriptome analysis on eukaryotic genomes, bacteria genome and metagenomics. He is familiar with Bioinformatics analysis such as genome assembly, genome annotation, genes comparative study, identification of SNP variants and prediction on the effect of the SNP variants, differential gene expression analysis, pan-genome analysis, phylogenetic tree analysis, prophage identification. He also develop useful Bioinformatics tools and pipelines such as the Pairwise Genome Comparison (PGC) and the Pathogenomics Profilling Tool (PathoProT). PGC is a bioinformatics tool which allow user to perform pairwise genome alignment and visualize the alignment in a circular layout and PathoProT allow user to screen for virulence genes in the genome. These 2 tools have been implemented and integrated into few published database such as VibrioBase and HelicoBase.
Dr Wei Yee Wee current research projects are the whole genome analysis of Mycobacterium cosmeticum and transcriptomic analysis of Bosenbergia rotunda.
Research interests
Bioinformatics related research project. I am interested in a variety of Next Generation Sequencing (NGS) projects such as whole genome and transcriptome analysis on eukaryotic genomes, bacteria genome and metagenomics. Bioinformatics analysis such as genome assembly, genome annotation, genes comparative study, identification of SNP variants and prediction on the effect of the SNP variants, differential gene expression analysis, pan-genome analysis, phylogenetic tree analysis, prophage identification will able to further characterize and unveil more novel biological knowledge by using just dry lab instead of wet lab. I am also interested in developing Bioinformatics tools and pipelines which will allow researcher without Bioinformatics knowledge to have a chance to perform Bioinformatics analysis easily.
Monash teaching commitment
- BIO1011 Biology 1
- SCI1020 Introduction ot Statistics
- GEN2052
- STA2216
- BIN3800
- BIN3890
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Research area keywords
- Bioinformatics
Collaborations and top research areas from the last five years
Projects
- 3 Finished
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Investigating the Effectiveness of H5P Interactive Content in Teaching a Second Year Statistics Unit (STA2216)
Hasan, M. Z., Wei Yee, W. & Roh, S.
1/12/22 → 15/12/23
Project: Research
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Assessment and monitoring of Malaysian freshwater biodiversity using traditional surveys and environmental DNA
Wei Yee, W., Barclay, H., Nurhidayu, S., Rahman, S., Bin Mohmad @ Fikri, A. H., Beng Kah, S. & Ayub, Q.
1/09/19 → 31/05/24
Project: Research
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Host-pathogen Genetics in Orang Asli Individuals Infected with Intestinal Nematodes.
Ayub, Q., Lim, Y. A. L., Chow, S. C., Phipps, M. & Wei Yee, W.
1/01/19 → 31/03/23
Project: Research
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Genome characterization and taxonomy of Actinomyces acetigenes sp. nov., and Actinomyces stomatis sp. nov., previously isolated from the human oral cavity
Tian, X., Teo, W. F. A., Wee, W. Y., Yang, Y., Ahmed, H., Jakubovics, N. S., Choo, S. W. & Tan, G. Y. A., Dec 2023, In: BMC Genomics. 24, 1, 15 p., 734.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile -
A collective statement in support of saving pangolins
Choo, S. W., Chong, J. L., Gaubert, P., Hughes, A. C., O'Brien, S., Chaber, A. L., Antunes, A., Platto, S., Sun, N. C. M., Yu, L., Koepfli, K. P., Suwal, T. L., Thakur, M., Ntie, S., Panjang, E., Kumaran, J. V., Mahmood, T., Heighton, S. P., Dorji, D., Gonedelé, B. S., & 45 others , 10 Jun 2022, In: Science of the Total Environment. 824, 8 p., 153666.Research output: Contribution to journal › Letter › Other › peer-review
Open AccessFile5 Citations (Scopus) -
Comparative genome analyses of Mycobacteroides immunogenum reveals two potential novel subspecies
Choo, S. W., Rishik, S. & Wee, W. Y., Dec 2020, In: Microbial Genomics. 6, 12, 12 p., 000495.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile7 Citations (Scopus) -
Transcriptional sequencing and gene expression analysis of various genes in fruit development of three different black pepper (Piper nigrum L.) varieties
Khew, C. Y., Harikrishna, J. A., Wee, W. Y., Lau, E. T. & Hwang, S. S., 30 Apr 2020, In: International Journal of Genomics. 2020, 18 p., 1540915.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile12 Citations (Scopus) -
Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline
Wee, W. Y., Dutta, A., Jayaraj, J. & Choo, S. W., Apr 2019, In: PLoS ONE. 14, 4, 18 p., e0214663.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile
Prizes
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Bronze Medal (Education Category): Virtual HITeL Teaching and Learning Innovation Competition (INNOVATORS2022)
Hasan, Md Zobaer (Recipient), Wei Yee, Wee (Recipient), Lim, Caryn (Recipient) & Chui Yi, Chow (Recipient), 2022
Prize: Prize (including medals and awards)
File -
Gold Medal (Education Category): 31st International, Invention, Innovation & Technology Exhibition in Malaysia (ITEX’20)
Wei Yee, Wee (Recipient), Hasan, Md Zobaer (Recipient) & Seow Mun, Hue (Recipient), 2020
Prize: Prize (including medals and awards)
File -
Gold Medal (Education Category): Virtual HITeL Teaching and Learning Innovation Competition (INNOVATORS2022)
Wei Yee, Wee (Recipient), Hasan, Md Zobaer (Recipient), Seow Mun, Hue (Recipient) & Ayub, Qasim (Recipient), 19 Jul 2022
Prize: Prize (including medals and awards)
File
Activities
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School of Science Education of Forum
Wee Wei Yee (Contributor)
Apr 2023Activity: Community Talks, Presentations, Exhibitions and Events › Public lecture/debate/seminar
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BMC Genomics (Journal)
Wee Wei Yee (Peer reviewer)
4 May 2023 → 4 Jul 2023Activity: Publication peer-review and editorial work types › Peer review responsibility
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ICESCO Workshop 2023
Wee Wei Yee (Organiser)
18 Aug 2023Activity: Participating in or organising an event types › Contribution to workshop, seminar, course