Projects per year
Personal profile
Biography
Dr Patrick Tan obtained his Honours degree from University Sains Malaysia in 2008 and went on to complete his Masters in Biotechnology in 2011. A year later, he secured a research fellowship to complete his doctoral work at the University of Wuerzburg in Germany. Dr Tan was trained in the field of microbial genetics and biotechnology. His doctoral studies focused on understanding the role of small RNAs (sRNAs) in Helicobacter pylori, a human pathogen that causes gastric ulcer.
His goal is to contribute to betterment of our society through life science research and education. Besides work, Dr Tan enjoys promoting STEM (science, technology, engineering, and mathematics) education to children and the public. He is also an avid photographer and a chess fan.
Research interests
My first research interest is to study the RNA biology of pathogens. During infection, pathogens often encounter various environmental stresses which require rapid response. RNA-based regulation (riboregulation) is often used by bacteria because it is faster compared to protein-based regulation. The importance of riboregulation in pathogens has gained much attention in recent years. It is now accepted that extensive post-transcriptional control of gene expression in bacteria regulates many cellular processes including virulence and adaptation. I am interested in using global RNA biology approaches to characterise transcriptome profiles and uncover RNA-based control mechanisms of clinically relevant pathogens.
My second interest is to develop riboregulators as alternative targets for antimicrobials via RNA-based Synthetic Biology approaches. The prevalence of multidrug-resistant pathogens calls for the development of new targeted antimicrobials. Recent developments in the field of RNA biology have positioned RNAs as potential antimicrobial agents. Why RNA? These molecules are well-characterized, modular, and consume less cellular resources compared to proteins, making RNA an attractive substrate for bioengineering.
We are currently working on elucidating the antimicrobial response of Shigella spp. in vitro and in vivo using a combination of next generation sequencing (NGS), genetic engineering and biochemical approaches. For the latest updates on this project, please visit our research page at https://www.researchgate.net/lab/Patrick-HS-Tan-Lab-Hock-Siew-Tan.
For interest in potential collaborations and research projects (undergraduate and postgraduate), please contact me at the email address above.
Monash teaching commitment
- BIO1022 (Life on Earth)
- BTH2732 (Recombinant DNA Technology)
- GEN2041 (Foundation of Genetics)
- BTH3752 (Molecular Biology and Biotechnology)
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Molecular Microbiology, PhD, Julius-Maximilians-Universität Würzburg (University of Wurzburg)
Research area keywords
- Antimicrobial resistance
- Molecular microbiology
- Genomics & Transcriptomics
Network
Projects
- 2 Active
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Design, synthesis and mechanistic studies of novel benzimidazole sirtuin inhibitors as a novel class of therapeutics against drug-resistant oral cancer cells
Yeong, K. Y., Ahemad, N., Lee, W., Osman, H., Yuen Lin, C. & Hock Siew, T.
1/11/20 → 31/10/23
Project: Research
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A novel strategy to characterize virulence factors and develop DNAzymes as antivirulence agents using the Shigella-Caenorhabditis elegans infection model.
Hock Siew, T., Mohamad, S. B., Narayanan, K., Yeong, K. Y. & Ayub, Q.
1/11/20 → 31/10/23
Project: Research
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In silico selection of aptamers to cobra venom cytotoxin
Hiu, J. J., Tan, H. S. & Yap, M. K. K., 21 Dec 2022, In: BMC Proceedings. 16, Suppl 7, p. 46-47 2 p., P-54.Research output: Contribution to journal › Meeting Abstract › peer-review
Open Access -
Putative pathogenic genes of Leptospira interrogans and Leptospira weilii isolated from patients with acute febrile illness
Safiee, A. W. M., Mohd Ali, M. R., Zoqratt, M. Z. H. M., Siew, T. H., Chuan, C. W., Huey, L. L., Fauzi, M. H., Besari, A. M., Yean Yean, C. & Ismail, N., Oct 2022, In: Tropical Medicine and Infectious Disease. 7, 10, 12 p., 284.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile -
RNA-cleaving DNAzymes as a diagnostic and therapeutic agent against antimicrobial resistant bacteria
Wong, B. C., Abu Bakar, J., Dhanoa, A. & Tan, H. S., Feb 2022, In: Current Genetics. 68, 1, p. 27-38 12 p.Research output: Contribution to journal › Review Article › Research › peer-review
1 Citation (Scopus) -
Selecting antibacterial aptamers against an essential outer membrane protein in Pseudomonas aeruginosa via aptamer repurposing approach
Selvam, R., Yap, M. K. K. & Tan, H. S., 21 Dec 2022, In: BMC Proceedings. 16, Suppl 7, p. 38-39 2 p., P-33.Research output: Contribution to journal › Meeting Abstract › peer-review
Open Access -
The role of quorum sensing, biofilm formation, and iron acquisition as key virulence mechanisms in Acinetobacter baumannii and the corresponding anti-virulence strategies
Law, S. K. K. & Tan, H. S., Jul 2022, In: Microbiological Research. 260, 17 p., 127032.Research output: Contribution to journal › Review Article › Research › peer-review
7 Citations (Scopus)