Projects per year
Personal profile
Biography
Professor Qasim Ayub joined Monash University Malaysia in 2017. He graduated from the Khyber Medical College, Peshawar, Pakistan and subsequently obtained his Ph.D. from the University of North Texas, Denton, USA on a Thomas Jefferson Fellowship. He has worked in USA, Pakistan, Italy and the United Kingdom. In Pakistan he assisted in setting up a state of the art molecular biology research facility, the Biomedical and Genetic Engineering Laboratories, in Islamabad, that became the focal point for the Human Genome Diversity Project. From 2008 until August 2017 he worked at the world renowned Wellcome Sanger Institute in Hinxton, near Cambridge, and was a member of the 1000 Genomes Project Consortiums and the gorilla sequencing team that published several high profile papers.
Qasim’s research focuses on population and evolutionary genomics in humans and non-human species. Over the past two decades he has analyzed DNA variation in worldwide ethnic and linguistic groups in order to understand their origins and relatedness. Several of the novel male specific markers that were identified during his studies of the Pakistani populations are now routinely used in forensic DNA identification. For this work he was awarded the President of Pakistan’s Medal of Excellence for contributions to science in 2006. He continues to maintain his interest in South Asian population genetics and exploring the functional basis for high-altitude adaptation in the Himalayas.
He is currently Director of the Monash University Molaysia Genomics Facility and conducts research on human population evolutionary and disease genomics. He also leads the Malaysian BioGenome Project that aims to generate high quality reference genomes in collaboration with the Vertebrate Genome Project for local and endemic species to promote conservation genomics. His research analyzes DNA variations in humans and other species to ascertain their distribution patterns in different parts of the world, so as to learn about their origins and migration patterns, and improve our understanding of genetic factors involved in the host pathogen interactions and evolutionary adaptation.
Research interests
My research interests are in genome sequencing and human evolutionary and disease genomics. Current projects are examining the aging population in Bandar Sunway and human intestinal parasitic interactions. I am also a co-investigator on the Malaysian Microbiome Project that is studying oral and gut microbiomes and anti-microbial resistance in collaboration with The South East Asia Community Observatory (SEACO - http://www.seaco.asia/)
Monash teaching commitment
- GEN2052 (Genomics and Population Genetics)
- BIN3800 (Bioinformatics)
- BIN3890 (Research Methods in Bioinformatics and Big Data Analysis)
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
External positions
Visiting Researcher, Wellcome Sanger Institute
Aug 2017 → …
Research area keywords
- Genomics
- Evolutionary genomics
- Population Genetics
- Disease genetics
- Conservation genetics
- Biodiversity
Collaborations and top research areas from the last five years
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Conservation genomics for Helmeted and Rhinoceros hornbills in Malaysia
Leela, A., Ayub, Q., Rahman, S., Dingle, C., Hatten, C. E. R. & Kaur, R.
1/07/23 → 30/06/25
Project: Research
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Genomics and immunogenetics assessment of Malayan Tiger
Ayub, Q., Sitam, F. T. & Leela, A.
1/03/23 → 1/03/25
Project: Research
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Understanding the role on myosin heavy chains (MYH) in congenital heart defects (CHDs): An integrated in-silico analysis and CRISPR/Cas9 gene-editing approach
Maran, S., Kooi Yeong, K., Hing, G. B., Ayub, Q., Khan, M. A. & sivalingam, S.
1/09/22 → 31/08/25
Project: Research
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Deciphering the soil and rhizosphere microbiomes of oil palm following introduction of the consortium of fungal biocontrol agents
1/08/22 → 31/12/28
Project: Research
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Biomonitoring of heavy metals in the feathers of House crow (Corvus splendens) from some metropolitans of Asia and Africa
Iqbal, F., Wilson, R., Ayub, Q., Song, B. K., Krzeminska-Ahmedzai, U., Talei, A., Hermawan, A. A. & Rahman, S., Mar 2023, In: Environmental Science and Pollution Research. 30, p. 35715–35726 12 p.Research output: Contribution to journal › Article › Research › peer-review
2 Citations (Scopus) -
Complete Genome Sequence and Analysis of a ST573 Multidrug-Resistant Methicillin-Resistant Staphylococcus aureus SauR3 Clinical Isolate from Terengganu, Malaysia
Al-Trad, E. I., Che Hamzah, A. M., Puah, S. M., Chua, K. H., Hanifah, M. Z., Ayub, Q., Palittapongarnpim, P., Kwong, S. M., Chew, C. H. & Yeo, C. C., 22 Mar 2023, In: Pathogens. 12, 3, 21 p., 502.Research output: Contribution to journal › Article › Research › peer-review
Open Access2 Citations (Scopus) -
Complete mitochondrial genome of Red Junglefowl (Gallus gallus spadiceus) from Peninsular Malaysia
Mazlan, M. N. A., Mohd-Kulaimi, N. A., Sitam, F. T., Rosli, N., Ayub, Q., Yong, L. S. & Md-Zain, B. M., 23 Feb 2023, In: Journal of Wildlife and Biodiversity. 7, 4, p. 83-89 7 p.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile -
Designing for me! What older dwellers' want to improve mobility in an age-friendly city
Teh, P-L., Low, V. N., Alex, D., Ayub, Q. & Lee, S. W. H., 2023, Human-Automation Interaction: Transportation. Duffy, V. G., Landry, S. J., Lee, J. D. & Stanton, N. (eds.). 1st ed. Cham Switzerland: Springer, p. 415-431 17 p. (Automation, Collaboration, & E-Services; vol. 11).Research output: Chapter in Book/Report/Conference proceeding › Chapter (Book) › Research › peer-review
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Genomic and phenotypic characterization of Acinetobacter colistiniresistens isolated from the feces of a healthy member of the community
Muzahid, N. H., Md Zoqratt, M. Z. H., Ten, K. E., Hussain, M. H., Su, T. T., Ayub, Q., Tan, H. S. & Rahman, S., 3 Aug 2023, In: Scientific Reports. 13, 1, 12 p., 12596.Research output: Contribution to journal › Article › Research › peer-review
Open AccessFile2 Citations (Scopus)
Prizes
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Gold Medal (Education Category): Virtual HITeL Teaching and Learning Innovation Competition (INNOVATORS2022)
Wei Yee, Wee (Recipient), Hasan, Md Zobaer (Recipient), Seow Mun, Hue (Recipient) & Ayub, Qasim (Recipient), 19 Jul 2022
Prize: Prize (including medals and awards)
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