20022021
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Research Output 2002 2019

2019

Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease

Wilmanns, J. C., Pandey, R., Hon, O., Chandran, A., Schilling, J. M., Forte, E., Wu, Q., Cagnone, G., Bais, P., Philip, V., Coleman, D., Kocalis, H., Archer, S. K., Pearson, J. T., Ramialison, M., Heineke, J., Patel, H. H., Rosenthal, N. A., Furtado, M. B. & Costa, M. W., Feb 2019, In : Molecular Metabolism. 20, p. 102-114 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Navigating the non-coding genome in heart development and Congenital Heart Disease

Chahal, G., Tyagi, S. & Ramialison, M., 1 May 2019, In : Differentiation. 107, p. 11-23 13 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Open Access
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Variable outcomes of human heart attack recapitulated in genetically diverse mice

Salimova, E., Nowak, K. J., Estrada, A. C., Furtado, M. B., McNamara, E., Nguyen, Q., Balmer, L., Preuss, C., Holmes, J. W., Ramialison, M., Morahan, G. & Rosenthal, N. A., 4 Mar 2019, In : Npj Regenerative Medicine. 4, 15 p., 5.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2018

A gene regulatory network anchored by LIM homeobox 1 for embryonic head development

Sibbritt, T., Ip, C. K., Khoo, P. L., Wilkie, E., Jones, V., Sun, J. Q. J., Shen, J. X., Peng, G., Han, J. D. J., Jing, N., Osteil, P., Ramialison, M., Tam, P. P. L. & Fossat, N., 1 Sep 2018, In : Genesis. 56, 9, 13 p., e23246.

Research output: Contribution to journalArticleResearchpeer-review

Control of cardiac jelly dynamics by NOTCH1 and NRG1 defines the building plan for trabeculation

del Monte-Nieto, G., Ramialison, M., Adam, A. A. S., Wu, B., Aharonov, A., D’uva, G., Bourke, L. M., Pitulescu, M. E., Chen, H., de la Pompa, J. L., Shou, W., Adams, R. H., Harten, S. K., Tzahor, E., Zhou, B. & Harvey, R. P., 9 May 2018, In : Nature. 557, 7705, p. 439-445 7 p.

Research output: Contribution to journalArticleResearchpeer-review

The Intercellular Tight Junction and Spontaneous Coronary Artery Dissection

Fahey, J. K., Williams, S. M., Tyagi, S., Powell, D. R., Hallab, J. C., Chahal, G., Ramialison, M. S. M. & White, A. J., 2 Oct 2018, In : Journal of the American College of Cardiology. 72, 14, p. 1752-1753 2 p.

Research output: Contribution to journalLetterOtherpeer-review

Trawler Web: An online de novo motif discovery tool for next-generation sequencing datasets

Dang, L. T., Tondl, M., Chiu, M. H. H., Revote, J., Paten, B., Tano, V., Tokolyi, A., Besse, F., Quaife-Ryan, G., Cumming, H., Drvodelic, M. J., Eichenlaub, M. P., Hallab, J. C., Stolper, J. S., Rossello, F. J., Bogoyevitch, M. A., Jans, D. A., Nim, H. T., Porrello, E. R., Hudson, J. E. & 1 others, Ramialison, M., 5 Apr 2018, In : BMC Genomics. 19, 1, 9 p., 238.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2017

Analysis of steric effects in DamID profiling of transcription factor target genes

Ramialison, M., Waardenberg, A. J., Schonrock, N., Doan, T., de Jong, D., Bouveret, R. & Harvey, R. P., 1 Mar 2017, In : Genomics. 109, 2, p. 75-82 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Cell Type of Origin Dictates the Route to Pluripotency

Nefzger, C. M., Rossello, F. J., Chen, J., Liu, X., Knaupp, A. S., Firas, J., Paynter, J. M., Pflueger, J., Buckberry, S., Lim, S. M., Williams, B., Alaei, S., Faye-Chauhan, K., Petretto, E., Nilsson, S. K., Lister, R., Ramialison, M., Powell, D. R., Rackham, O. J. L. & Polo, J. M., 5 Dec 2017, In : Cell Reports. 21, 10, p. 2649-2660 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Open Access
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Elk1 in congenital and late onset heart disease: at the heart of the matter

Hallab, J., Bouveret, R., del Monte Nieto, G., Hesselson, D., Miles, L., Dworkin, S., Harvey, R. & Ramialison, M., Jul 2017, p. S30. 1 p.

Research output: Contribution to conferenceAbstractOtherpeer-review

Open Access
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Extracellular matrix dynamics reveals the building plan for cardiac trabeculation

del Monte Nieto, G., Ramialison, M., Cherian, A. V., Wu, B., Aharonov, A., D'Uva, G., Bourke, L. M., Pitulescu, M. E. & Chen, H., Jul 2017, p. S146. 1 p.

Research output: Contribution to conferenceAbstractOtherpeer-review

Germline Stem Cell Activity Is Sustained by SALL4-Dependent Silencing of Distinct Tumor Suppressor Genes

Chan, A. L., La, H. M., Legrand, J. M. D., Mäkelä, J. A., Eichenlaub, M., De Seram, M., Ramialison, M. & Hobbs, R. M., 12 Sep 2017, In : Stem Cell Reports. 9, 3, p. 956-971 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Multi-Cellular Transcriptional Analysis of Mammalian Heart Regeneration

Quaife-Ryan, G. A., Sim, C. B., Ziemann, M., Kaspi, A., Rafehi, H., Ramialison, M., El-Osta, A., Hudson, J. E. & Porrello, E. R., 19 Sep 2017, In : Circulation. 136, 12, p. 1123-1139 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Point mutations in murine Nkx2-5 phenocopy human congenital heart disease and induce pathogenic Wnt signaling

Furtado, M. B., Wilmanns, J. C., Chandran, A., Perera, J., Hon, O., Biben, C., Willow, T. J., Nim, H. T., Kaur, G., Simonds, S., Wu, Q., Willians, D., Salimova, E., Plachta, N., Denegre, J. M., Murray, S. A., Fatkin, D., Cowley, M., Pearson, J. T., Kaye, D. & 4 others, Ramialison, M., Harvey, R. P., Rosenthal, N. A. & Costa, M. W., 23 Mar 2017, In : JCI Insight. 2, 6, p. e88271 18 p., e88271.

Research output: Contribution to journalArticleResearch

2016

A novel conditional mouse model for Nkx2-5 reveals transcriptional regulation of cardiac ion channels

Furtado, M. B., Wilmanns, J., Chandran, A., Tonta, M. A., Biben, C., Eichenlaub, M. P., Coleman, H. A., Berger, S., Bouveret, R., Singh, R., Harvey, R. P., Ramialison, M. S. M., Pearson, J. T., Parkington, H. C., Rosenthal, N. A. & Da Costa, M. W., 2016, In : Differentiation. 91, 1-3, p. 29 - 41 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Formation of the Embryonic Head in the Mouse: Attributes of a Gene Regulatory Network

Tam, P. P. L., Fossat, N., Wilkie, E., Loebel, D. A. F., Ip, C. K. & Ramialison, M., 2016, Current Topics in Developmental Biology: Essays on Developmental Biology, Part B. Wassarman, P. M. (ed.). 1st ed. Cambridge MA USA: Academia Press, Vol. 117. p. 497-521 25 p. (Current Topics in Developmental Biology; vol. 117).

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

2015

Asymmetric inheritance of the apical domain and self-renewal of retinal ganglion cell progenitors depend on Anillin function

Paolini, A., Duchemin, A-L., Albadri, S., Patzel, E., Bornhorst, D., Gonzalez Avalos, P., Lemke, S., Machate, A., Brand, M., Sel, S., Di Donato, V., Del Bene, F., Zolessi, F. R., Ramialison, M. S. M. & Poggi, L., 2015, In : Development. 142, 5, p. 832 - 839 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Cardiac gene expression data and in silico analysis provide novel insights into human and mouse taste receptor gene regulation

Foster, S. R., Porrello, E. R., Stefani, M., Smith, N. J., Molenaar, P., dos Remedios, C. G., Thomas, W. G. & Ramialison, M. S. M., 2015, In : Naunyn-Schmiedeberg's Archives of Pharmacology. 388, 10 (Art. No: 1118), p. 1009 - 1027 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Drosophila Hrp48 is required for mushroom body axon growth, branching and guidance

Bruckert, H., Marchetti, G., Ramialison, M. S. M. & Besse, F., 2015, In : PLoS ONE. 10, 8 , 15 p., e0136610.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets

Bouveret, R., Waardenberg, A. J., Schonrock, N., Ramialison, M. S. M., Doan, T. B., de Jong, D., Bondue, A., Kaur, G., Mohamed, S., Fonoudi, H., Chen, C., Wouters, M. A., Bhattacharya, S., Plachta, N. D., Dunwoodie, S. L., Chapman, G., Blanpain, C. & Harvey, R. P., 2015, In : eLife. 4, 30 p., e06942.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2014

Genetic networks governing heart development

Waardenberg, A. J., Ramialison, M., Bouveret, R. & Harvey, R. P., Nov 2014, In : Cold Spring Harbor Perspectives in Medicine. 23 p., a013839.

Research output: Contribution to journalArticleResearchpeer-review

Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1

Nguyen, P., Hollway, G. E., Sonntag, C., Miles, L. B., Hall, T. E., Berger, S., Fernandez, K. J., Gurevich, D., Cole, N. J., Alaei Shehni, S., Ramialison, M. S. M., Sutherland, R. L., Polo, J. M., Lieschke, G. & Currie, P. D., 2014, In : Nature. 512, 7514, p. 314 - 318 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Imp promotes axonal remodeling by regulating profilin mRNA during brain development

Medioni, C., Ramialison, M. S. M., Ephrussi, A. & Besse, F., 2014, In : Current Biology. 24, 7, p. 793 - 800 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Tyrosine phosphorylation of LRP6 by Src and Fer inhibits Wnt/beta-catenin signalling

Chen, Q., Su, Y., Wesslowski, J., Hagemann, A. I. H., Ramialison, M. S. M., Wittbrodt, J., Scholpp, S. & Davidson, G. R., 2014, In : EMBO Reports. 15, 12, p. 1254 - 1267 14 p.

Research output: Contribution to journalArticleResearchpeer-review

2012

Cis-regulatory properties of medaka synexpression groups

Ramialison, M., Reinhardt, R., Henrich, T., Wittbrodt, B., Kellner, T., Lowy, C. M. & Wittbrodt, J., 1 Mar 2012, In : Development. 139, 5, p. 917-928 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Close association of olfactory placode precursors and cranial neural crest cells does not predestine cell mixing

Harden, M. V., Pereiro, L., Ramialison, M., Wittbrodt, J., Prasad, M. K., Mccallion, A. S. & Whitlock, K. E., Jul 2012, In : Developmental Dynamics. 241, 7, p. 1143-1154 12 p.

Research output: Contribution to journalArticleResearchpeer-review

2011

Defining the earliest step of cardiovascular progenitor specification during embryonic stem cell differentiation

Bondue, A., Tännler, S., Chiapparo, G., Chabab, S., Ramialison, M., Paulissen, C., Beck, B., Harvey, R. P. & Blanpain, C., 7 Mar 2011, In : Journal of Cell Biology. 192, 5, p. 751-765 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolutionary relationships and diversification of barhl genes within retinal cell lineages

Schuhmacher, L. N., Albadri, S., Ramialison, M. & Poggi, L., 21 Nov 2011, In : BMC Evolutionary Biology. 11, 1, 16 p., 340.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2010

Nlcam modulates midline convergence during anterior neural plate morphogenesis

Brown, K. E., Keller, P. J., Ramialison, M., Rembold, M., Stelzer, E. H. K., Loosli, F. & Wittbrodt Joachim, J., Mar 2010, In : Developmental Biology. 339, 1, p. 14-25 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Using Trawler-standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation

Haudry, Y., Ramialison, M., Paten, B., Wittbrodt, J. & Ettwiller, L., Feb 2010, In : Nature Protocols. 5, 2, p. 323-334 12 p.

Research output: Contribution to journalArticleResearchpeer-review

2009

Identification of starmaker-like in medaka as a putative target gene of Pax2 in the otic vesicle

Bajoghli, B., Ramialison, M., Aghaallaei, N., Czerny, T. & Wittbrodt, J., Nov 2009, In : Developmental Dynamics. 238, 11, p. 2860-2866 7 p.

Research output: Contribution to journalArticleResearchpeer-review

2008

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Deutsch, E., Ball, C., Berman, J., Bova, S. G., Brazma, A., Bumgarner, R., Campbell, D., Causton, H., Christiansen, J., Daian, F., Dauga, D., Davidson, D., Gimenez, G., Goo, Y., Grimmond, S., Henrich, T., Herrmann, B., Johnson, M., Korb, M., Mills, J. & 20 others, Oudes, A., Parkinson, H., Pascal, L., Pollet, N., Quackenbush, J., Ramialison, M., Ringwald, M., Salgado, D., Sansone, S-A., Sherlock, G., Stoeckert Jnr, C., Swedlow, J., Taylor, R., Walashek, L., Warford, A., Wilkinson, D., Zhou, Y., Zon, L. I., Liu, A. & True, L., 2008, In : Nature Biotechnology. 26, 3, p. 305 - 312 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

Ramialison, M., Bajoghli, B., Aghaallaei, N., Ettwiller, L., Gaudan, S., Wittbrodt, B., Czerny, T. & Wittbrodt, J., 1 Oct 2008, In : Genome Biology. 9, 10, 11 p., R145.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2007

New genes in the evolution of the neural crest differentiation program

Martinez-Morales, J. R., Henrich, T., Ramialison, M. & Wittbrodt, J., 12 Mar 2007, In : Genome Biology. 8, 3, 17 p., R36.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Trawler: De novo regulatory motif discovery pipeline for chromatin immunoprecipitation

Ettwiller, L., Paten, B., Ramialison, M., Birney, E. & Wittbrodt, J., Jul 2007, In : Nature Methods. 4, 7, p. 563-565 3 p.

Research output: Contribution to journalArticleResearchpeer-review

2006

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)

Deutsch, E. W., Ball, C. A., Bova, G. S., Brazma, A., Bumgarner, R. E., Campbell, D., Causton, H. C., Christiansen, J., Davidson, D., Eichner, L. J., Goo, Y. A., Grimmond, S., Henrich, T., Johnson, M. H., Korb, M., Mills, J. C., Oudes, A., Parkinson, H. E., Pascal, L. E., Quackenbush, J. & 11 others, Ramialison, M., Ringwald, M., Sansone, S. A., Sherlock, G., Stoeckert, C. J., Swedlow, J., Taylor, R. C., Walashek, L., Zhou, Y., Liu, A. Y. & True, L. D., 2006, In : OMICS A Journal of Integrative Biology. 10, 2, p. 205-208 4 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

2005

MEPD: A resource for medaka gene expression patterns

Henrich, T., Ramialison, M., Wittbrodt, B., Assouline, B., Bourrat, F., Berger, A., Himmelbauer, H., Sasaki, T., Shimizu, N., Westerfield, M., Kondoh, H. & Wittbrodt, J., 15 Jul 2005, In : Bioinformatics. 21, 14, p. 3195-3197 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2004

A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes

Furutani-Seiki, M., Sasado, T., Morinaga, C., Suwa, H., Niwa, K., Yoda, H., Deguchi, T., Hirose, Y., Yasuoka, A., Henrich, T., Watanabe, T., Iwanami, N., Kitagawa, D., Saito, K., Asaka, S., Osakada, M., Kunimatsu, S., Momoi, A., Elmasri, H., Winkler, C. & 22 others, Ramialison, M., Loosli, F., Quiring, R., Carl, M., Grabher, C., Winkler, S., Del Bene, F., Shinomiya, A., Kota, Y., Yamanaka, T., Okamoto, Y., Takahashi, K., Todo, T., Abe, K., Takahama, Y., Tanaka, M., Mitani, H., Katada, T., Nishina, H., Nakajima, N., Wittbrodt, J. & Kondoh, H., Jul 2004, In : Mechanisms of Development. 121, 7-8, p. 647-658 12 p.

Research output: Contribution to journalArticleResearchpeer-review

GSD: A genetic screen database

Henrich, T., Ramialison, M., Segerdell, E., Westerfield, M., Furutani-Seiki, M., Wittbrodt, J. & Kondoh, H., Jul 2004, In : Mechanisms of Development. 121, 7-8, p. 959-963 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Large-scale expression screening by automated whole-mount in situ hybridization

Quiring, R., Wittbrodt, B., Henrich, T., Ramialison, M., Burgtorf, C., Lehrach, H. & Wittbrodt, J., Jul 2004, In : Mechanisms of Development. 121, 7-8, p. 971-976 6 p.

Research output: Contribution to journalArticleResearchpeer-review

2003

MEPD: a Medaka gene expression pattern database

Henrich, T., Ramialison, M., Quiring, R., Wittbrodt, B., Furutani-Seiki, M., Wittbrodt, J. & Kondoh, H., 1 Jan 2003, In : Nucleic Acids Research. 31, 1, p. 72-74 3 p.

Research output: Contribution to journalArticleResearchpeer-review

2002

Expression profiling in mouse fetal thymus reveals clusters of coordinately expressed genes that mark individual stages of T-cell ontogeny

Ramialison, M., Mohr, E., Nal, B., Saboul, T., Carrier, A., Tagett, R., Granjeaud, S., Nguyen, C., Gautheret, D., Jordan, B. R. & Ferrier, P., 2002, In : Immunogenetics. 54, 7, p. 469-478 10 p.

Research output: Contribution to journalArticleResearchpeer-review