Projects per year
Personal profile
Biography
Dr. Luis E. Valentin-Alvarado earned his bachelor's degree in Chemistry and Microbiology from the University of Puerto Rico. Early in his career, he conducted research at the Woods Hole Oceanographic Institution and MIT, where he studied cyanobacterial trace metal acquisition mechanisms and utilized metaproteomics to analyze marine cyanobacteria.
In 2024, he completed his PhD in Microbiology at UC Berkeley under the mentorship of Prof. Jill Banfield and Prof. Dave Savage. His doctoral research focused on the diversity and function of microbial communities in subsurface ecosystems. Through genomic analyses of new archaeal lineages like Asgard archaea and ultra-small Candidate Phyla Radiation (CPR) bacteria, he uncovered enzymes integral to Earth's biogeochemical cycles and elucidated the roles of mobile genetic elements (MGEs) in microbial population dynamics.
Currently, as a research fellow at the Monash Biomedicine Discovery Institute in Dr. Gavin Knott’s lab, Luis combines genomics, biochemistry, and generative artificial intelligence to investigate evolutionary conflicts involving nucleic acid enzymes. His work focuses on how MGEs and microbial hosts interact and co-evolve through these enzymes, aiming to uncover new molecular mechanisms that govern microbial evolution and adaptation. This aligns with new projects in the Knott lab exploring the influence of MGEs on nucleic acid machineries in uncultivated microbes.
Luis's research interests encompass ecosystem-scale genomics and enzyme function, with a particular emphasis on how uncultivated microbe contribute to biogeochemical cycles in subsurface ecosystems. He is intrigued by microbial enzymes that drive critical processes such as carbon cycling, hydrogen production, and epigenetic regulation. By applying advanced bioinformatics tools and conducting enzyme function studies, he generates complete genomes that shed light on metabolic networks and essential enzymes. His exploration of evolutionary conflicts with nucleic acid enzymes seeks to reveal how MGEs influence microbial evolution at both the genomic and enzymatic levels, uncovering new molecular mechanisms that shape ecosystem dynamics.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Microbial Genomics and Ecosystem Scale Genomics, Ph.D., University of California Berkeley
Award Date: 17 Feb 2024
Microbiology and Chemistry, BSci, Universidad de Puerto Rico (University of Puerto Rico)
Award Date: 29 Jul 2016
Research area keywords
- Microbial Genomics
- Ecosystem Scale-Genomics
- Epigenetic Enzymes
- Mobile genetic elements
- Archaea
- Structural Genomics
- CRISPR Biology
Collaborations and top research areas from the last five years
Projects
- 1 Not started
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Systematic discovery of evolutionary origins and functional diversity of methyltransferases.
Valentin Alvarado, L. (Primary Chief Investigator (PCI)) & Knott, G. (Supervisor)
1/10/25 → 30/09/28
Project: Research
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Asgard archaea modulate potential methanogenesis substrates in wetland soil
Valentin-Alvarado, L. E., Appler, K. E., De Anda, V., Schoelmerich, M. C., West-Roberts, J., Kivenson, V., Crits-Christoph, A., Ly, L., Sachdeva, R., Greening, C., Savage, D. F., Baker, B. J. & Banfield, J. F., 31 Jul 2024, In: Nature Communications. 15, 1, 16 p., 6384.Research output: Contribution to journal › Article › Research › peer-review
Open Access4 Citations (Scopus) -
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism
Valentin-Alvarado, L. E., Fakra, S. C., Probst, A. J., Giska, J. R., Jaffe, A. L., Oltrogge, L. M., West-Roberts, J., Rowland, J., Manga, M., Savage, D. F., Greening, C., Baker, B. J. & Banfield, J. F., 26 Jan 2024, In: Microbiome. 12, 1, 20 p., 15.Research output: Contribution to journal › Article › Research › peer-review
Open Access6 Citations (Scopus) -
Minimal and hybrid hydrogenases are active from archaea
Greening, C. (Leading Author), Cabotaje, P. R. (Leading Author), Valentin Alvarado, L. E. (Leading Author), Leung, P. M. (Leading Author), Land, H., Rodrigues-Oliveira, T., Ponce-Toledo, R. I., Senger, M., Klamke, M. A., Milton, M., Lappan, R., Mullen, S., West-Roberts, J., Mao, J., Song, J., Schoelmerich, M., Stairs, C. W., Schleper, C., Grinter, R. (Leading Author) & Spang, A. (Leading Author) & 2 others, , 20 Jun 2024, In: Cell. 187, 13, p. 3357-3372.e19 36 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access18 Citations (Scopus) -
Rubisco Function, Evolution, and Engineering
Prywes, N., Phillips, N. R., Tuck, O. T., Valentin-Alvarado, L. E. & Savage, D. F., 2023, In: Annual Review of Biochemistry. 92, p. 385-410 26 p.Research output: Contribution to journal › Review Article › Research › peer-review
Open Access59 Citations (Scopus) -
A widely distributed genus of soil Acidobacteria genomically enriched in biosynthetic gene clusters
Crits-Christoph, A., Diamond, S., Al-Shayeb, B., Valentin-Alvarado, L. E. & Banfield, J. F., Dec 2022, In: ISME Communications. 2, 1, 8 p., 70.Research output: Contribution to journal › Article › Research › peer-review
Open Access