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Personal profile

Biography

B.Sc. in Computer Science, M.Sc. in Bioinformatics and a Ph.D. in Sciences at University of São Paulo. More than 8 years’ experience in bioinformatics and genomic analyses of large-scale sequencing data from animal, environmental and clinical sources, as well as knowledge of artificial intelligence (big data), electronics, infectious diseases and molecular evolution. She has developed several bioinformatic pipelines using short- and long-reads for tracking outbreak dissemination of pathogenic bacteria (ESKAPE) using the One Health approach for evaluating antimicrobial drug resistance profiles; virulome, plasmidome and pangenome content, and phylogenetic analysis to discover transmission routes in South America. Additionally, she has developed and is still working on the development of several low-cost hardware units, such as the LUISA project, and pipeline and GPU-based tools that could help reduce the data processing time, providing feasible and democratic nanopore sequencing analysis for low income countries.

Education/Academic qualification

Sciences, PhD, Universidade de Sao Paulo (University of Sao Paulo)

Award Date: 28 May 2019

Computer Science, Bacharelor, Centro Universitário do Pará

Award Date: 15 Jan 2000

Research area keywords

  • Infectious Diseases
  • Bioinformatics
  • Machine learning
  • GPU
  • Sequence analysis
  • antimicrobial drug resistance

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Research Output

Draft genome sequence of a multidrug-resistant KPC-2 and SRT-2 co-producing Serratia marcescens strain isolated from a hospitalised patient in Chile

Quezada-Aguiluz, M., Lincopan, N., Cerdeira, L., Fuga, B., Silva, F., Barrera, B., Cifuentes, M., Bello-Toledo, H., Opazo-Capurro, A. & González-Rocha, G., Jun 2020, In : Journal of Global Antimicrobial Resistance. 21, p. 1-2 2 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Open Access

Draft genome sequence of a Pseudomonas aeruginosa sequence type 3351 strain exhibiting high-level resistance to polymyxins in a pediatric patient with cystic fibrosis in Mexico

Rosales-Reyes, R., Esposito, F., Fuga, B., Cerdeira, L., Gayosso-Vázquez, C., Lezana-Fernández, J. L., Lascurain, R., Valvano, M. A., Lincopan, N. & Santos-Preciadoa, J. I., 1 Jan 2020, In : Microbiology Resource Announcements. 9, 2, 3 p., e01261-19.

Research output: Contribution to journalArticleOtherpeer-review

Open Access
File

Genome and plasmid context of two rmtG-carrying Enterobacter hormaechei isolated from urinary tract infections in Brazil

Martins, E. R., Bueno, M. F. C., Francisco, G. R., Casella, T., de Oliveira Garcia, D., Cerdeira, L. T., Gerber, A. L., de Almeida, L. G. P., Lincopan, N., de Vasconcelos, A. T. R., Nogueira, M. C. L. & Estofolete, C. F., Mar 2020, In : Journal of Global Antimicrobial Resistance. 20, p. 36-40 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Genomic features of a polymyxin-resistant Klebsiella pneumoniae ST491 isolate co-harbouring blaCTX-M-8 and qnrE1 genes from a hospitalised cat in São Paulo, Brazil

Sartori, L., Sellera, F. P., Moura, Q., Cardoso, B., Fontana, H., Côrtes, L. A., Cerdeira, L. & Lincopan, N., Jun 2020, In : Journal of Global Antimicrobial Resistance. 21, p. 186-187 2 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Open Access

Novel small IncX3 plasmid carrying the blaKPC-2 gene in high-risk Klebsiella pneumoniae ST11/CG258

Fuga, B., Ferreira, M. L., Cerdeira, L. T., de Campos, P. A., Dias, V. L., Rossi, I., Machado, L. G., Lincopan, N., Gontijo-Filho, P. P. & Ribas, R. M., Feb 2020, In : Diagnostic Microbiology and Infectious Disease. 96, 2, 4 p., 114900.

Research output: Contribution to journalArticleResearchpeer-review