20072022

Research output per year

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2020

Methods for dynamic synchrotron X-ray respiratory imaging in live animals

Morgan, K. S., Parsons, D., Cmielewski, P., McCarron, A., Gradl, R., Farrow, N., Siu, K., Takeuchi, A., Suzuki, Y., Uesugi, K., Uesugi, M., Yagi, N., Hall, C., Klein, M., Maksimenko, A., Stevenson, A., Hausermann, D., Dierolf, M., Pfeifferb, F. & Donnelleyd, M., 1 Jan 2020, In : Journal of Synchrotron Radiation. 27, p. 164-175 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Model-Based Iterative Reconstruction for Propagation-Based Phase-Contrast X-ray CT including Models for the Source and the Detector

Hehn, L., Gradl, R., Dierolf, M., Morgan, K. S., Paganin, D. M. & Pfeiffer, F., Jun 2020, In : IEEE Transactions on Medical Imaging. 39, 6, p. 1975-1987 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Photon-counting, energy-resolving and super-resolution phase contrast X-ray imaging using an integrating detector.

O'Connell, D. W., Morgan, K. S., Ruben, G., Schaff, F., Croton, L. C. P., Buckley, G. A., Paganin, D. M., Uesugi, K. & Kitchen, M. J., 2 Mar 2020, In : Optics Express. 28, 5, p. 7080-7094 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Real-time in vivo imaging of regional lung function in a mouse model of cystic fibrosis on a laboratory X-ray source

Murrie, R. P., Werdiger, F., Donnelley, M., Lin, Y., Carnibella, R. P., Samarage, C. R., Pinar, I., Preissner, M., Wang, J., Li, J., Morgan, K. S., Parsons, D. W., Dubsky, S. & Fouras, A., 16 Jan 2020, In : Scientific Reports. 10, 8 p., 447.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2019

Applying the Fokker–Planck equation to grating-based x-ray phase and dark-field imaging

Morgan, K. S. & Paganin, D. M., 25 Nov 2019, In : Scientific Reports. 9, 1, 14 p., 17465.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2 Citations (Scopus)

Dynamic in vivo chest x-ray dark-field imaging in mice

Gradl, R., Morgan, K. S., Dierolf, M., Jud, C., Hehn, L., Gunther, B., Moller, W., Kutschke, D., Yang, L., Stoeger, T., Pfeiffer, D., Gleich, B., Achterhold, K., Schmid, O. & Pfeiffer, F., Feb 2019, In : IEEE Transactions on Medical Imaging. 38, 2, p. 649-656 8 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Live-pig-airway surface imaging and whole-pig CT at the Australian Synchrotron Imaging and Medical Beamline

Donnelley, M., Morgan, K. S., Gradl, R., Klein, M., Hausermann, D., Hall, C., Maksimenko, A. & Parsons, D. W., 1 Jan 2019, In : Journal of Synchrotron Radiation. 26, p. 175-183 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
4 Citations (Scopus)

Multimodal Precision Imaging of Pulmonary Nanoparticle Delivery in Mice: Dynamics of Application, Spatial Distribution, and Dosimetry

Yang, L., Gradl, R., Dierolf, M., Möller, W., Kutschke, D., Feuchtinger, A., Hehn, L., Donnelley, M., Günther, B., Achterhold, K., Walch, A., Stoeger, T., Razansky, D., Pfeiffer, F., Morgan, K. S. & Schmid, O., 6 Dec 2019, In : Small. 15, 49, 16 p., 1904112.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2 Citations (Scopus)

Particle coating alters mucociliary transit in excised rat trachea: A synchrotron X-ray imaging study

Gardner, M., McCarron, A., Morgan, K., Parsons, D. & Donnelley, M., 29 Jul 2019, In : Scientific Reports. 9, 1, 10 p., 10983.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
1 Citation (Scopus)

Ring artifact suppression in X-ray computed tomography using a simple, pixel-wise response correction

Croton, L. C. P., Ruben, G., Morgan, K. S., Paganin, D. M. & Kitchen, M. J., 13 May 2019, In : Optics Express. 27, 10, p. 14231-14245 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
1 Citation (Scopus)

Visualizing treatment delivery and deposition in mouse lungs using in vivo x-ray imaging

Gradl, R., Dierolf, M., Yang, L., Hehn, L., Günther, B., Möller, W., Kutschke, D., Stoeger, T., Gleich, B., Achterhold, K., Donnelley, M., Pfeiffer, F., Schmid, O. & Morgan, K. S., 10 Aug 2019, In : Journal of Controlled Release. 307, p. 282-291 10 p.

Research output: Contribution to journalArticleResearchpeer-review

6 Citations (Scopus)

X-ray Fokker–Planck equation for paraxial imaging

Paganin, D. M. & Morgan, K. S., 26 Nov 2019, In : Scientific Reports. 9, 1, 18 p., 17537.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2 Citations (Scopus)
2018

Deterministic X-ray Bragg coherent diffraction imaging as a seed for subsequent iterative reconstruction

Pavlov, K. M., Morgan, K. S., Punegov, V. I. & Paganin, D. M., Aug 2018, In : Journal of Physics Communications. 2, 8, 9 p., 085027.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Experimental methods for flow and aerosol measurements in human airways and their replicas

Lizal, F., Jedelsky, J., Morgan, K., Bauer, K., Llop, J., Cossio, U., Kassinos, S., Verbanck, S., Ruiz-Cabello, J., Santos, A., Koch, E. & Schnabel, C., 15 Feb 2018, In : European Journal of Pharmaceutical Sciences. 113, p. 95-131 37 p.

Research output: Contribution to journalArticleResearchpeer-review

16 Citations (Scopus)

In situ phase contrast X-ray brain CT

Croton, L. C. P., Morgan, K. S., Paganin, D. M., Kerr, L. T., Wallace, M. J., Crossley, K. J., Miller, S. L., Yagi, N., Uesugi, K., Hooper, S. B. & Kitchen, M. J., 1 Dec 2018, In : Scientific Reports. 8, 1, 12 p., 11412.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
10 Citations (Scopus)

In vivo dynamic phase-contrast x-ray imaging using a compact light source

Gradl, R., Dierolf, M., Günther, B., Hehn, L., Möller, W., Kutschke, D., Yang, L., Donnelley, M., Murrie, R., Erl, A., Stoeger, T., Gleich, B., Achterhold, K., Schmid, O., Pfeiffer, F. & Morgan, K. S., 1 May 2018, In : Scientific Reports. 8, 8 p., 6788.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
9 Citations (Scopus)

Nonlinear statistical iterative reconstruction for propagation-based phase-contrast tomography

Hehn, L., Morgan, K., Bidola, P., Noichl, W., Gradl, R., Dierolf, M., Noël, P. B. & Pfeiffer, F., 1 Mar 2018, In : APL Bioengineering. 2, 1, p. 016105 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Propagation-based phase-contrast tomography of a Guinea pig inner ear with cochlear implant using a model-based iterative reconstruction algorithm

Hehn, L., Gradl, R., Voss, A., Günther, B., Dierolf, M., Jud, C., Willer, K., Allner, S., Hammel, J. U., Hessler, R., Morgan, K. S., Herzen, J., Hemmert, W. & Pfeiffer, F., 1 Nov 2018, In : Biomedical Optics Express. 9, 11, p. 5330-5339 10 p., #337870.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2017

Application of sensitive, high-resolution imaging at a commercial lab-based X-ray micro-CT system using propagation-based phase retrieval

Bidola, P., Morgan, K., Willner, M., Fehringer, A., Allner, S., Prade, F., Pfeiffer, A. F. H. & Achterhold, K., 1 May 2017, In : Journal of Microscopy. 266, 2, p. 211-220 10 p.

Research output: Contribution to journalArticleResearchpeer-review

9 Citations (Scopus)

Deterministic Bragg Coherent Diffraction Imaging

Pavlov, K. M., Punegov, V. I., Morgan, K. S., Schmalz, G. & Paganin, D. M., 1 Dec 2017, In : Scientific Reports. 7, 1, 15 p., 1132.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
5 Citations (Scopus)

High-resolution mucociliary transport measurement in live excised large animal trachea using synchrotron X-ray imaging

Donnelley, M., Morgan, K. S., Awadalla, M., Farrow, N. R., Hall, C. & Parsons, D. W., 16 May 2017, In : Respiratory Research. 18, 1, 11 p., 95.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
10 Citations (Scopus)

Propagation-based Phase-Contrast X-ray Imaging at a Compact Light Source

Gradl, R., Dierolf, M., Hehn, L., Günther, B., Yildirim, A. Ö., Gleich, B., Achterhold, K., Pfeiffer, F. & Morgan, K. S., 1 Dec 2017, In : Scientific Reports. 7, 1, 9 p., 4908.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
20 Citations (Scopus)
2016

Capturing and visualizing transient X-ray wavefront topological features by single-grid phase imaging

Morgan, K. S., Petersen, T. C., Donnelley, M., Farrow, N., Parsons, D. W. & Paganin, D. M., 17 Oct 2016, In : Optics Express. 24, 21, p. 24435-24450 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
6 Citations (Scopus)

Phase contrast x-ray velocimetry of small animal lungs: optimising imaging rates

Murrie, R. P., Paganin, D. M., Fouras, A. & Morgan, K. S., 1 Jan 2016, In : Biomedical Optics Express. 7, 1, p. 79-92 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
5 Citations (Scopus)

Quantification of heterogeneity in lung disease with image-based pulmonary function testing

Stahr, C. S., Samarage, R., Donnelley, M., Farrow, N. R., Morgan, K., Zosky, G., Boucher, R. C., Siu, K., Mall, M. A., Parsons, D. W., Dubsky, S. & Fouras, A., 27 Jul 2016, In : Scientific Reports. 6, p. 1-10 10 p., 29438.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
15 Citations (Scopus)

Requirements for dynamical differential phase contrast x-ray imaging with a laboratory source

Macindoe, D., Kitchen, M., Irvine, S., Fouras, A. & Morgan, K., 28 Nov 2016, In : Physics in Medicine and Biology. 61, 24, p. 8720-8735 16 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Singularimetry of local phase gradients using vortex lattices and in-line holography

Petersen, T. C., Bishop, A. I., Eastwood, S. A., Paganin, D. M., Morgan, K. S. & Morgan, M. J., 8 Feb 2016, In : Optics Express. 24, 3, p. 2259-2272 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
3 Citations (Scopus)
2015

Comparison of different numerical treatments for x-ray phase tomography of soft tissue from differential phase projections

Pelliccia, D., Vaz, R., Svalbe, I., Morgan, K. S., Marathe, S., Xiao, X., Assoufid, L., Anderson, R. A., Topczewski, J. & Bryson-Richardson, R. J., 2015, In : Physics in Medicine and Biology. 60, 8, p. 3065-3080 16 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Exploring experimental parameter choice for rapid speckle-tracking phase-contrast X-ray imaging with a paper analyzer

Aloisio, I. A., Paganin, D., Wright, C. & Morgan, K., 1 Sep 2015, In : Journal of Synchrotron Radiation. 22, 5, p. 1279-1288 10 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Live small-animal X-ray lung velocimetry and lung micro-tomography at the Australian Synchrotron Imaging and Medical Beamline

Murrie, R. P., Morgan, K. S., Maksimenko, A., Fouras, A., Paganin, D. M., Hall, C., Siu, K. K. W., Parsons, D. W. & Donnelley, M., 2015, In : Journal of Synchrotron Radiation. 22, 4, p. 1049-1055 7 p.

Research output: Contribution to journalArticleResearchpeer-review

20 Citations (Scopus)
2014

Dual scanning and full-field hard x-ray microscopy with a laboratory source

Blackhall, C. J., Morgan, K. S. & Pelliccia, D., 2014, In : Optics Express. 22, 13, p. 15437 - 15446 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
3 Citations (Scopus)

Feasibility study of propagation-based phase-contrast X-ray lung imaging on the Imaging and Medical beamline at the Australian Synchrotron

Murrie, R., Stevenson, A. W., Morgan, K. S., Fouras, A., Paganin, D. & Siu, K. K. W., 2014, In : Journal of Synchrotron Radiation. 21, 2, p. 430 - 445 16 p.

Research output: Contribution to journalArticleResearchpeer-review

12 Citations (Scopus)

Non-invasive airway health assessment: Synchrotron imaging reveals effects of rehydrating treatments on mucociliary transit in-vivo

Donnelley, M., Morgan, K. S., Siu, K. K. W., Farrow, N. R., Stahr, C. S-Y., Boucher, R. C., Fouras, A. & Parsons, D., 14 Jan 2014, In : Scientific Reports. 4, 1, 6 p., 3689.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
18 Citations (Scopus)

Tracking extended mucociliary transport activity of individual deposited particles: longitudinal synchrotron X-ray imaging in live mice

Donnelley, M., Morgan, K. S., Siu, K. K. W., Fouras, A., Farrow, N. R., Carnibella, R. & Parsons, D., 2014, In : Journal of Synchrotron Radiation. 21, 4, p. 768 - 773 6 p.

Research output: Contribution to journalArticleResearchpeer-review

13 Citations (Scopus)
2013

A sensitive x-ray phase contrast technique for rapid imaging using a single phase grid analyzer

Morgan, K. S., Modregger, P., Irvine, S. C., Rutishauser, S., Guzenko, V. A., Stampanoni, M. & David, C., 2013, In : Optics Letters. 38, 22, p. 4605 - 4608 4 p.

Research output: Contribution to journalArticleOtherpeer-review

24 Citations (Scopus)

Measuring airway surface liquid depth in ex vivo mouse airways by x-ray imaging for the assessment of cystic fibrosis airway therapies

Morgan, K. S., Donnelley, M., Paganin, D., Fouras, A., Yagi, N., Suzuki, Y., Takeuchi, A., Uesugi, K., Boucher, R. C., Parsons, D. W. & Siu, K. K. W., 30 Jan 2013, In : PLoS ONE. 8, 1, 6 p., e55822.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
18 Citations (Scopus)

Variability of in vivo fluid dose distribution in mouse airways is visualized by high-speed synchrotron X-ray imaging

Donnelley, M., Morgan, K. S., Siu, K. K. W. & Parsons, D. W., 2013, In : Journal of Aerosol Medicine and Pulmonary Drug Delivery. 26, 5, p. 307 - 316 10 p.

Research output: Contribution to journalArticleResearchpeer-review

9 Citations (Scopus)
2012

Dry deposition of pollutant and marker particles onto live mouse airway surfaces enhances monitoring of individual particle mucociliary transit behaviour

Donnelley, M., Morgan, K. S., Siu, K. K. W. & Parsons, D. W., 2012, In : Journal of Synchrotron Radiation. 19, 4, p. 551 - 558 8 p.

Research output: Contribution to journalArticleResearchpeer-review

8 Citations (Scopus)

X-ray phase imaging with a paper analyzer

Morgan, K. S., Paganin, D. & Siu, K. K. W., 2012, In : Applied Physics Letters. 100, 12, p. 1 - 4 4 p.

Research output: Contribution to journalArticleResearchpeer-review

96 Citations (Scopus)
2011

Quantitative single-exposure x-ray phase contrast imaging using a single attenuation grid

Morgan, K., Paganin, D. & Siu, K., 2011, In : Optics Express. 19, 20, p. 19781 - 19789 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
53 Citations (Scopus)

Quantitative x-ray phase-contrast imaging using a single grating of comparable pitch to sample feature size

Morgan, K., Paganin, D. & Siu, K., 2011, In : Optics Letters. 36, 1, p. 55 - 57 3 p.

Research output: Contribution to journalArticleResearchpeer-review

28 Citations (Scopus)
2010

A new technique to examine individual pollutant particle and fibre deposition and transit behaviour in live mouse trachea

Donnelley, M., Siu, K., Morgan, K., Skinner, W., Suzuki, Y., Takeuchi, A., Uesugi, K., Yagi, N. & Parsons, D., 2010, In : Journal of Synchrotron Radiation. 17, 6, p. 719 - 729 11 p.

Research output: Contribution to journalArticleResearchpeer-review

13 Citations (Scopus)

Assessment of the use of a diffuser in propagation-based x-ray phase contrast imaging

Irvine, S., Morgan, K., Suzuki, Y., Uesugi, K., Takeuchi, A., Paganin, D. & Siu, K., 2010, In : Optics Express. 18, 13, p. 13478 - 13491 14 p.

Research output: Contribution to journalArticleResearchpeer-review

8 Citations (Scopus)

Measurement of hard x-ray coherence in the presence of a rotating random-phase-screen diffuser

Morgan, K. S., Irvine, S., Suzuki, Y., Uesugi, K., Takeuchi, A., Paganin, D. & Siu, K. K. W., 2010, In : Optics Communications. 283, 2, p. 216 - 225 10 p.

Research output: Contribution to journalArticleResearchpeer-review

13 Citations (Scopus)

The projection approximation and edge contrast for x-ray propagation-based phase contrast imaging of a cylindrical edge

Morgan, K. S., Siu, K. K. W. & Paganin, D., 2010, In : Optics Express. 18, 10, p. 9865 - 9878 14 p.

Research output: Contribution to journalArticleResearchpeer-review

19 Citations (Scopus)

The projection approximation versus an exact solution for x-ray phase contrast imaging, with a plane wave scattered by a dielectric cylinder

Morgan, K., Siu, K. & Paganin, D., 2010, In : Optics Communications. 283, 23, p. 4601 - 4608 8 p.

Research output: Contribution to journalArticleResearchpeer-review

5 Citations (Scopus)
2009

Real-time non-invasive detection of inhalable particulates delivered into live mouse airways

Donnelley, M., Morgan, K. S., Fouras, A., Skinner, W. M., Uesugi, K., Yagi, N., Siu, K. K. W. & Parsons, D. W., 2009, In : Journal of Synchrotron Radiation. 16, p. 553 - 561 9 p.

Research output: Contribution to journalArticleResearchpeer-review

16 Citations (Scopus)
2008

High-resolution visualization of airspace structures in intact mice via synchrotron phase-contrast X-ray imaging (PCXI)

Parsons, D. W., Morgan, K. S., Donnelley, M., Fouras, A., Crosbie, J., Williams, I. M., Boucher, R. C., Uesugi, K., Yagi, N. & Siu, K. K. W., 2008, In : Journal of Anatomy. 213, p. 217 - 227 11 p.

Research output: Contribution to journalArticleResearchpeer-review

44 Citations (Scopus)

Phase contrast X-ray imaging for the non-invasive detection of airway surfaces and lumen characteristics in mouse models of airway disease

Siu, K. K. W., Morgan, K. S., Paganin, D. M., Boucher, R. C., Uesugi, K., Yagi, N. & Parsons, D. W., 2008, In : European Journal of Radiology. 68, p. 22 - 26 4 p.

Research output: Contribution to journalArticleResearchpeer-review

32 Citations (Scopus)