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Research Output 1988 2019

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2019

A cis-acting bidirectional transcription switch controls sexual dimorphism in the liverwort

Hisanaga, T., Okahashi, K., Yamaoka, S., Kajiwara, T., Nishihama, R., Shimamura, M., Yamato, K. T., Bowman, J. L., Kohchi, T. & Nakajima, K., 15 Mar 2019, In : EMBO Journal. 38, 6, 12 p., e100240.

Research output: Contribution to journalArticleResearchpeer-review

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Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha

Hirakawa, Y., Uchida, N., Yamaguchi, Y. L., Tabata, R., Ishida, S., Ishizaki, K., Nishihama, R., Kohchi, T., Sawa, S. & Bowman, J. L., 1 Mar 2019, In : PLoS Genetics. 15, 3, 20 p., e1007997.

Research output: Contribution to journalArticleResearchpeer-review

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2018

An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha

Eklund, D. M., Kanei, M., Flores-Sandoval, E., Ishizaki, K., Nishihama, R., Kohchi, T., Lagercrantz, U., Bhalerao, R. P., Sakata, Y. & Bowman, J. L., 19 Nov 2018, In : Current Biology. 28, 22, p. 3691-3699 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha

Flores-Sandoval, E., Eklund, D. M., Hong, S. F., Alvarez, J. P., Fisher, T. J., Lampugnani, E. R., Golz, J. F., Vázquez-Lobo, A., Dierschke, T., Lin, S. S. & Bowman, JL., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1612-1630 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land

Romani, F., Reinheimer, R., Florent, S. N., Bowman, J. L. & Moreno, J. E., 1 Jul 2018, In : New Phytologist. 219, 1, p. 408-421 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha

Schmid, M. W., Giraldo-Fonseca, A., Rövekamp, M., Smetanin, D., Bowman, J. L. & Grossniklaus, U., 25 Jan 2018, In : Genome Biology. 19, 1, 17 p., 9.

Research output: Contribution to journalArticleResearchpeer-review

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Genetic analysis of the liverwort Marchantia polymorpha reveals that R2R3MYB activation of flavonoid production in response to abiotic stress is an ancient character in land plants

Albert, N. W., Thrimawithana, A. H., McGhie, T. K., Clayton, W. A., Deroles, S. C., Schwinn, K. E., Bowman, J. L., Jordan, B. R. & Davies, K. M., 1 Apr 2018, In : New Phytologist. 218, 2, p. 554-566 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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Marchantia liverworts as a proxy to plants’ basal microbiomes

Alcaraz, L. D., Peimbert, M., Barajas, H. R., Dorantes-Acosta, A. E., Bowman, J. L. & Arteaga-Vázquez, M. A., 1 Dec 2018, In : Scientific Reports. 8, 1, 12 p., 12712.

Research output: Contribution to journalArticleResearchpeer-review

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MicroRNAs in Marchantia polymorpha

Lin, S. S. & Bowman, J. L., 1 Oct 2018, In : New Phytologist. 220, 2, p. 409-416 8 p.

Research output: Contribution to journalArticleResearchpeer-review

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Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication

Tylewicz, S., Petterle, A., Marttila, S., Miskolczi, P., Azeez, A., Singh, R. K., Immanen, J., Mähler, N., Hvidsten, T. R., Eklund, D. M., Bowman, J. L., Helariutta, Y. & Bhalerao, R. P., 13 Apr 2018, In : Science. 360, 6385, p. 212-215 3 p.

Research output: Contribution to journalArticleResearchpeer-review

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Terpenoid Secondary Metabolites in Bryophytes: Chemical Diversity, Biosynthesis and Biological Functions

Chen, F., Ludwiczuk, A., Wei, G., Chen, X., Crandall-Stotler, B. & Bowman, J. L., 4 May 2018, In : Critical Reviews in Plant Sciences. 37, 2-3, p. 210-231 22 p.

Research output: Contribution to journalArticleResearchpeer-review

The KNOXI transcription factor SHOOT meristemless regulates floral fate in arabidopsis[OPEN]

Roth, O., Alvarez, J. P., Levy, M., Bowman, J. L., Ori, N. & Shani, E., 1 Jun 2018, In : Plant Cell. 30, 6, p. 1309-1321 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants

Clayton, W. A., Albert, N. W., Thrimawithana, A. H., McGhie, T. K., Deroles, S. C., Schwinn, K. E., Warren, B. A., McLachlan, A. R. G., Bowman, J. L., Jordan, B. R. & Davies, K. M., Nov 2018, In : Plant Journal. 96, 3, p. 503-517 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2017

A genetic screen for impaired systemic RNAi highlights the crucial role of DICER-LIKE 2

Taochy, C., Gursanscky, N. R., Cao, J., Fletcher, S. J., Dressel, U., Mitter, N., Tucker, M. R., Koltunow, A. M. G., Bowman, J. L., Vaucheret, H. & Carroll, B. J., 1 Nov 2017, In : Plant Physiology. 175, 3, p. 1424-1437 14 p.

Research output: Contribution to journalArticleResearchpeer-review

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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L. & 93 othersCaballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J. M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S. & Schmutz, J., 5 Oct 2017, In : Cell. 171, 2, p. 287-304.e15 33 p.

Research output: Contribution to journalArticleResearchpeer-review

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2016

A brief history of Marchantia from Greece to genomics

Bowman, J. L., 2016, In : Plant and Cell Physiology. 57, 2, p. 210-229 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Active suppression of a leaf meristem orchestrates determinate leaf growth

Alvarez, J. P., Furumizu, C., Efroni, I., Eshed, Y. & Bowman, J. L., 6 Oct 2016, In : eLife. 5, 17 p., e15023.

Research output: Contribution to journalArticleResearchpeer-review

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Class III HD-Zip activity coordinates leaf development in Physcomitrella patens

Yip, H. K., Floyd, S. K., Sakakibara, K. & Bowman, J. L., 1 Nov 2016, In : Developmental Biology. 149, 1, p. 184-197 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Efficient and inducible use of artificial microRNAs in Marchantia polymorpha

Flores-Sandoval, E., Dierschke, T., Fisher, T. J. & Bowman, J. L., 2016, In : Plant and Cell Physiology. 57, 2, p. 281-290 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolution of the YABBY gene family in seed plants

Finet, C., Floyd, S. K., Conway, S. J., Zhong, B., Scutt, C. P. & Bowman, J. L., 2016, In : Evolution & Development. 18, 2, p. 116-126 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Identification of miRNAs and their targets in the liverwort Marchantia polymorpha by integrating RNA-Seq and degradome analyses

Lin, P-C., Lu, C-W., Shen, B-N., Lee, G-Z., Bowman, J. L., Arteaga-Vazquez, M. A., Liu, L-Y. D., Hong, S-F., Lo, C-F., Su, G-M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K. T. & Lin, S-S., 2016, In : Plant and Cell Physiology. 57, 2, p. 339-358 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Marchantia MpRKD regulates the gametophyte-sporophyte transition by keeping egg cells quiescent in the absence of fertilization

Rövekamp, M., Bowman, J. L. & Grossniklaus, U., 11 Jul 2016, In : Current Biology. 26, 13, p. 1782-1789 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants

Jia, Q., Li, G., Köllner, T. G., Fu, J., Chen, X., Xiong, W., Crandall-Stotler, B. J., Bowman, J., Weston, D. J., Zhang, Y., Chen, L., Xie, Y., Li, F. W., Rothfels, C. J., Larsson, A., Graham, S. W., Stevenson, D. W., Wong, G. K-S., Gershenzon, J. & Chen, F., 25 Oct 2016, In : Proceedings of the National Academy of Sciences. 113, 43, p. 12328-12333 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Molecular diversity of terpene synthases in the liverwort Marchantia polymorpha

Kumar, S., Kempinski, C., Zhuang, X., Norris, A., Mafu, S., Zi, J., Bell, S. A., Nybo, S. E., Kinison, S. E., Jiang, Z., Goklany, S., Linscott, K. B., Chen, X., Jia, Q., Brown, S. D., Bowman, J., Babbitt, P. C., Peters, R. J., Chen, F. & Chappell, J., 1 Oct 2016, In : Plant Cell. 28, 10, p. 2632-2650 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Profiling and characterization of small RNAs in the liverwort, Marchantia polymorpha, belonging to the first diverged land plants

Tsuzuki, M., Nishihama, R., Ishizaki, K., Kurihara, Y., Matsui, M., Bowman, J. L., Kohchi, T., Hamada, T. & Watanabe, Y., 2016, In : Plant and Cell Physiology. 57, 2, p. 359-372 14 p.

Research output: Contribution to journalArticleResearchpeer-review

The naming of names: guidelines for gene nomenclature in Marchantia

Bowman, J. L., Araki, T., Arteaga-Vazquez, M. A., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S-S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y. & 3 othersYamato, K. T., Zachgo, S. & Kohchi, T., 1 Feb 2016, In : Plant and Cell Physiology. 57, 2, p. 257-261 5 p.

Research output: Contribution to journalArticleResearchpeer-review

2015

Antagonistic roles for KNOX1 and KNOX2 genes in patterning the land plant body plan following an ancient gene duplication

Furumizu, C., Alvarez, J. P., Sakakibara, K. & Bowman, J. L., 1 Feb 2015, In : PLoS Genetics. 11, 2, 24 p., e1004980.

Research output: Contribution to journalArticleResearchpeer-review

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A role of TDIF peptide signaling in vascular cell differentiation is conserved among euphyllophytes

Hirakawa, Y. & Bowman, J. L., 2015, In : Frontiers in Plant Science. 6, 10 p., 1048.

Research output: Contribution to journalArticleResearchpeer-review

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A simple auxin transcriptional response system regulates multiple morphogenetic processes in the liverwort Marchantia polymorpha

Flores Sandoval, E., Eklund, D. M. & Bowman, J. L., 2015, In : PLoS Genetics. 11, 5, 26 p., e1005207.

Research output: Contribution to journalArticleResearchpeer-review

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Auxin-mediated transcriptional system with a minimal set of components is critical for morphogenesis through the life cycle in Marchantia polymorpha

Kato, H., Ishizaki, K., Kouno, M., Shirakawa, M., Bowman, J. L., Nishihama, R. & Kohchi, T., 2015, In : PLoS Genetics. 11, 5, 26 p., e1005084.

Research output: Contribution to journalArticleResearchpeer-review

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Auxin produced by the indole-3-pyruvic acid pathway regulates development and gemmae dormancy in the liverwort Marchantia polymorpha

Eklund, D. M., Ishizaki, K., Flores-Sandoval, E., Kikuchi, S., Takebayashi, Y., Tsukamoto, S., Hirakawa, Y., Nonomura, M., Kato, H., Kouno, M., Bhalerao, R. P., Lagercrantz, U., Kasahara, H., Kohchi, T. & Bowman, J. L., 2015, In : Plant Cell. 27, 6, p. 1650-1669 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12

Jun, S. E., Cho, K-H., Hwang, J-Y., Abdel-Fattah, W., Hammermeister, A., Schaffrath, R., Bowman, J. L. & Kim, G-T., 2015, In : Molecules and Cells. 38, 3, p. 243-250 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2014

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor

Floyd, S. K., Ryan, J. G., Conway, S. J., Brenner, E., Burris, K. P., Burris, J. N., Chen, T., Edger, P. P., Graham, S. W., Leebens-Mack, J. H., Pires, J. C., Rothfels, C. J., Sigel, E. M., Stevenson, D. W., Stewart Jr, C. N., Wong, G. K-S. & Bowman, J. L., 2014, In : Molecular Phylogenetics and Evolution. 81, p. 159 - 173 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2013

Evolution of the class IV HD-Zip gene family in streptophytes

Zalewski, C. S., Floyd, S., Furumizu, C., Sakakibara, K., Stevenson, D. W. & Bowman, J. L., 2013, In : Molecular Biology and Evolution. 30, 10, p. 2347 - 2365 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Genome-wide identification of KANADI1 target genes

Merelo, P., Xie, Y., Brand, L., Ott, F., Wiegel, D., Bowman, J. L., Heisler, M. G. & Wenkel, S., 2013, In : PLoS ONE. 8, 10, p. 1 - 14 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants

Sakakibara, K., Ando, S., Yip, H. K., Tamada, Y., Hiwatashi, Y., Murata, T., Deguchi, H., Hasebe, M. & Bowman, J. L., 2013, In : Science. 339, 6123, p. 1067 - 1070 4 p.

Research output: Contribution to journalArticleResearchpeer-review

My favourite flowering image

Bowman, J., 2013, In : Journal of Experimental Botany. E, p. 1 - 4 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Walkabout on the long branches of plant evolution

Bowman, J. L., 2013, In : Current Opinion in Plant Biology. 16, 1, p. 70 - 77 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2011

Arabidopsis homologs of the petunia Hairy Meristem gene are required for maintenance of shoot and root indeterminacy

Engstrom, E., Andersen, C., Gumulak-Smith, J., Hu, J., Orlova, E., Sozzani, R. & Bowman, J., 2011, In : Plant Physiology. 155, 2, p. 735 - 750 16 p.

Research output: Contribution to journalArticleResearchpeer-review

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

Banks, J. A., Nishiyama, T., Hasebe, M., Bowman, J., Gribskov, M., dePamphilis, C., Albert, V., Aono, N., Aoyama, T., Ambrose, B., Ashton, N., Axtell, M., Barker, E., Barker, M., Bennetzen, J., Bonawitz, N., Chapple, C., Cheng, C., Correa, L. G. G., Dacre, M. & 83 othersDeBarry, J., Dreyer, I., Elias, M., Engstrom, E., Estelle, M., Liang, F., Finet, C., Floyd, S., Fremmer, W., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Ying, L., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, T., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-Roeber, B., Nelson, D., Obara, M., Oguri, Y., Olmstead, R., Onodera, N., Petersen, B. L., Pils, B., Prigge, M., Rensing, S., Riano-Pachon, D., Roberts, A., Sato, Y., Scheller, H., Schulz, B., Schulz, C., Shakirov, E., Shibagaki, N., Shinohara, N., Shippen, D., Sorensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theissen, G., Ulvskov, P., Wakazuki, S., Weng, J-K., Willats, W., Wipf, D., Wolf, P., Yang, L., Zimmer, A., Zhu, Q., Mitros, T., Hellsten, U., Loque, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E., Lucas, S., Rokhsar, D. & Grigoriev, I., 2011, In : Science. 332, 6032, p. 960 - 963 4 p.

Research output: Contribution to journalArticleResearchpeer-review

2010

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

Carlsbecker, A., Lee, J-Y., Roberts, C., Dettmer, J., Lehesranta, S., Zhou, J., Lindgren, O., Moreno-Risueno, M., Vaten, A., Thiramadee, S., Campilho, A., Sebastian, J., Bowman, J., Helariutta, Y. & Benfey, P., 2010, In : Nature. 465, 7296, p. 316 - 321 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Differentiating arabidopsis shoots from leaves by combined YABBY activities

Sarojam, R., Sappl, P., Goldshmidt, A., Efroni, I., Floyd, S., Eshed, Y. & Bowman, J., 2010, In : Plant Cell. 22, 7, p. 2113 - 2130 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Gene expression patterns in seed plant shoot meristems and leaves: homoplasy or homology?

Floyd, S. & Bowman, J., 2010, In : Journal of Plant Research. 123, 1, p. 43 - 55 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation

Ilegems, M., Douet, V., Meylan-Bettex, M., Uyttewaal, M., Brand, L., Bowman, J. & Stieger, P., 2010, In : Development. 137, 6, p. 975 - 984 10 p.

Research output: Contribution to journalArticleResearchpeer-review

2009

Auxin-dependent patterning and gamete specification in the Arabidopsis female gametophyte

Pagnussat, G. C., Alandete-Saez, M., Bowman, J. L. & Sundaresan, V., 2009, In : Science. 324, p. 1684 - 1689 6 p.

Research output: Contribution to journalArticleResearchpeer-review

The flowering hormone florigen functions as a general systemic regulator of growth and termination

Shalit, A., Rozman, A., Goldshmidt, A., Alvarez, J. P., Bowman, J. L., Eshed, Y. & Lifschitz, E., 2009, In : Proceedings of the National Academy of Sciences. 106, 20, p. 8392 - 8397 6 p.

Research output: Contribution to journalArticleResearchpeer-review

The NGATHA distal organ development genes are essential for style specification in Arabidopsis

Alvarez, J. P., Goldshmidt, A., Efroni, I., Bowman, J. L. & Eshed, Y., 2009, In : Plant Cell. 21, p. 1373 - 1393 21 p.

Research output: Contribution to journalArticleResearchpeer-review

2008

Activity range of arabidopsis small RNAs derived from different biogenesis pathways

Tretter, E., Alvarez, J. P., Eshed, Y. & Bowman, J. L., 2008, In : Plant Physiology. 147, 1, p. 58 - 62 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Criteria for annotation of plant microRNAs

Meyers, B., Axtell, M., Bartel, B., Bartel, D., Baulcombe, D., Bowman, J. L., Cao, X., Carrington, J., Chen, X., Green, P., Griffiths-Jones, S., Jacobsen, S., Mallory, A., Martienssen, R., Poethig, R. S., Qi, Y., Vaucheret, H., Voinnet, O., Watanabe, Y., Weigel, D. & 1 othersZhu, J-K., 2008, In : Plant Cell. 20, p. 3186 - 3190 4 p.

Research output: Contribution to journalArticleResearchpeer-review