If you made any changes in Pure these will be visible here soon.

Research Output 1988 2019

2019

A cis-acting bidirectional transcription switch controls sexual dimorphism in the liverwort

Hisanaga, T., Okahashi, K., Yamaoka, S., Kajiwara, T., Nishihama, R., Shimamura, M., Yamato, K. T., Bowman, J. L., Kohchi, T. & Nakajima, K., 15 Mar 2019, In : EMBO Journal. 38, 6, 12 p., e100240.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Cellulose Synthesis – Central Components and Their Evolutionary Relationships

Lampugnani, E. R., Flores-Sandoval, E., Tan, Q. W., Mutwil, M., Bowman, J. L. & Persson, S., 1 May 2019, In : Trends in Plant Science. 24, 5, p. 402-412 11 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha

Hirakawa, Y., Uchida, N., Yamaguchi, Y. L., Tabata, R., Ishida, S., Ishizaki, K., Nishihama, R., Kohchi, T., Sawa, S. & Bowman, J. L., 1 Mar 2019, In : PLoS Genetics. 15, 3, 20 p., e1007997.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Evolution and co-option of developmental regulatory networks in early land plants

Bowman, J. L., Briginshaw, L. N. & Florent, S. N., 2019, Current Topics in Developmental Biology. Wassarman, P. M. (ed.). Cambridge MA USA: Academic Press, Vol. 131. p. 35-53 19 p. (Current Topics in Developmental Biology; vol. 131).

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

Something ancient and something neofunctionalized—evolution of land plant hormone signaling pathways

Bowman, J. L., Briginshaw, L. N., Fisher, T. J. & Flores-Sandoval, E., 1 Feb 2019, In : Current Opinion in Plant Biology. 47, p. 64-72 9 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Open Access
File
2018

3D Body Evolution: Adding a New Dimension to Colonize the Land

Furumizu, C., Hirakawa, Y., Bowman, J. L. & Sawa, S., 6 Aug 2018, In : Current Biology. 28, 15, p. R838-R840

Research output: Contribution to journalShort SurveyOtherpeer-review

An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha

Eklund, D. M., Kanei, M., Flores-Sandoval, E., Ishizaki, K., Nishihama, R., Kohchi, T., Lagercrantz, U., Bhalerao, R. P., Sakata, Y. & Bowman, J. L., 19 Nov 2018, In : Current Biology. 28, 22, p. 3691-3699 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha

Flores-Sandoval, E., Eklund, D. M., Hong, S. F., Alvarez, J. P., Fisher, T. J., Lampugnani, E. R., Golz, J. F., Vázquez-Lobo, A., Dierschke, T., Lin, S. S. & Bowman, JL., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1612-1630 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land

Romani, F., Reinheimer, R., Florent, S. N., Bowman, J. L. & Moreno, J. E., 1 Jul 2018, In : New Phytologist. 219, 1, p. 408-421 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolution of the metabolic network leading to ascorbate synthesis and degradation using Marchantia polymorpha as a model system

Creameans, J., Medina-Jiménez, K., Gómez-Díaz, T., Cedillo-Castelán, V., Flores-Martínez, D., Aguilar-Cruz, A., Altehua-Lopez, O., Lopez-Ramirez, G., Dorantes-Acosta, A. E., Bowman, J. L., Lorence, A. & Arteaga-Vazquez, M. A., 19 Mar 2018, Ascorbic Acid in Plant Growth, Development and Stress Tolerance. Hossain, M. A., Munné-Bosch, S., Burritt, D. J., Diaz-Vivancos, P., Fujita, M. & Lorence, A. (eds.). Cham Switzerland: Springer, p. 417-430 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha

Schmid, M. W., Giraldo-Fonseca, A., Rövekamp, M., Smetanin, D., Bowman, J. L. & Grossniklaus, U., 25 Jan 2018, In : Genome Biology. 19, 1, 17 p., 9.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Genetic Analysis: An Integrated Approach. 3rd Edition

Sanders, M. F. & Bowman, J. L., 2018, 791 p. San Francisco : Benjamin Cummings, Pearson Education Inc.

Research output: Other contributionOtherpeer-review

Genetic analysis of the liverwort Marchantia polymorpha reveals that R2R3MYB activation of flavonoid production in response to abiotic stress is an ancient character in land plants

Albert, N. W., Thrimawithana, A. H., McGhie, T. K., Clayton, W. A., Deroles, S. C., Schwinn, K. E., Bowman, J. L., Jordan, B. R. & Davies, K. M., 1 Apr 2018, In : New Phytologist. 218, 2, p. 554-566 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Marchantia liverworts as a proxy to plants’ basal microbiomes

Alcaraz, L. D., Peimbert, M., Barajas, H. R., Dorantes-Acosta, A. E., Bowman, J. L. & Arteaga-Vázquez, M. A., 1 Dec 2018, In : Scientific Reports. 8, 1, 12 p., 12712.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

MicroRNAs in Marchantia polymorpha

Lin, S. S. & Bowman, J. L., 1 Oct 2018, In : New Phytologist. 220, 2, p. 409-416 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication

Tylewicz, S., Petterle, A., Marttila, S., Miskolczi, P., Azeez, A., Singh, R. K., Immanen, J., Mähler, N., Hvidsten, T. R., Eklund, D. M., Bowman, J. L., Helariutta, Y. & Bhalerao, R. P., 13 Apr 2018, In : Science. 360, 6385, p. 212-215 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Terpenoid Secondary Metabolites in Bryophytes: Chemical Diversity, Biosynthesis and Biological Functions

Chen, F., Ludwiczuk, A., Wei, G., Chen, X., Crandall-Stotler, B. & Bowman, J. L., 4 May 2018, In : Critical Reviews in Plant Sciences. 37, 2-3, p. 210-231 22 p.

Research output: Contribution to journalArticleResearchpeer-review

The KNOXI transcription factor SHOOT meristemless regulates floral fate in arabidopsis[OPEN]

Roth, O., Alvarez, J. P., Levy, M., Bowman, J. L., Ori, N. & Shani, E., 1 Jun 2018, In : Plant Cell. 30, 6, p. 1309-1321 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants

Clayton, W. A., Albert, N. W., Thrimawithana, A. H., McGhie, T. K., Deroles, S. C., Schwinn, K. E., Warren, B. A., McLachlan, A. R. G., Bowman, J. L., Jordan, B. R. & Davies, K. M., Nov 2018, In : Plant Journal. 96, 3, p. 503-517 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2017

A genetic screen for impaired systemic RNAi highlights the crucial role of DICER-LIKE 2

Taochy, C., Gursanscky, N. R., Cao, J., Fletcher, S. J., Dressel, U., Mitter, N., Tucker, M. R., Koltunow, A. M. G., Bowman, J. L., Vaucheret, H. & Carroll, B. J., 1 Nov 2017, In : Plant Physiology. 175, 3, p. 1424-1437 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Bowman, J. L., Kohchi, T., Yamato, K. T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S. S., Althoff, F., Araki, T., Arteaga-Vazquez, M. A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C. R., Briginshaw, L. & 93 othersCaballero-Perez, J., Catarino, B., Chen, F., Chiyoda, S., Chovatia, M., Davies, K. M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A. E., Eklund, D. M., Florent, S. N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A. J., Higo, A., Hirakawa, Y., Hundley, H. N., Ikeda, Y., Inoue, K., Inoue, S. I., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S. S., Lindquist, E., Lipzen, A. M., Lu, C. W., De Luna, E., Martienssen, R. A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M. W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J. M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S. & Schmutz, J., 5 Oct 2017, In : Cell. 171, 2, p. 287-304.e15 33 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2016

A brief history of Marchantia from Greece to genomics

Bowman, J. L., 2016, In : Plant and Cell Physiology. 57, 2, p. 210-229 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Active suppression of a leaf meristem orchestrates determinate leaf growth

Alvarez, J. P., Furumizu, C., Efroni, I., Eshed, Y. & Bowman, J. L., 6 Oct 2016, In : eLife. 5, 17 p., e15023.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Class III HD-Zip activity coordinates leaf development in Physcomitrella patens

Yip, H. K., Floyd, S. K., Sakakibara, K. & Bowman, J. L., 1 Nov 2016, In : Developmental Biology. 149, 1, p. 184-197 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Efficient and inducible use of artificial microRNAs in Marchantia polymorpha

Flores-Sandoval, E., Dierschke, T., Fisher, T. J. & Bowman, J. L., 2016, In : Plant and Cell Physiology. 57, 2, p. 281-290 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Evolution in the cycles of life

Bowman, J., Sakakibara, K., Furumizu, C. & Dierschke, T., 23 Nov 2016, In : Annual Review of Genetics. 50, p. 133-154 22 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Evolution of the YABBY gene family in seed plants

Finet, C., Floyd, S. K., Conway, S. J., Zhong, B., Scutt, C. P. & Bowman, J. L., 2016, In : Evolution & Development. 18, 2, p. 116-126 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Field guide to plant model systems

Chang, C., Bowman, J. L. & Meyerowitz, E. M., 6 Oct 2016, In : Cell. 167, 2, p. 325-339 15 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Identification of miRNAs and their targets in the liverwort Marchantia polymorpha by integrating RNA-Seq and degradome analyses

Lin, P-C., Lu, C-W., Shen, B-N., Lee, G-Z., Bowman, J. L., Arteaga-Vazquez, M. A., Liu, L-Y. D., Hong, S-F., Lo, C-F., Su, G-M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K. T. & Lin, S-S., 2016, In : Plant and Cell Physiology. 57, 2, p. 339-358 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Marchantia

Berger, F., Bowman, J. L. & Kohchi, T., 7 Mar 2016, In : Current Biology. 26, 5, p. R186-R187 2 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Marchantia: past, present and future

Bowman, J. L., Araki, T. & Kohchi, T., 1 Feb 2016, In : Plant and Cell Physiology. 57, 2, p. 205-209 5 p.

Research output: Contribution to journalEditorialOtherpeer-review

Marchantia MpRKD regulates the gametophyte-sporophyte transition by keeping egg cells quiescent in the absence of fertilization

Rövekamp, M., Bowman, J. L. & Grossniklaus, U., 11 Jul 2016, In : Current Biology. 26, 13, p. 1782-1789 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants

Jia, Q., Li, G., Köllner, T. G., Fu, J., Chen, X., Xiong, W., Crandall-Stotler, B. J., Bowman, J., Weston, D. J., Zhang, Y., Chen, L., Xie, Y., Li, F. W., Rothfels, C. J., Larsson, A., Graham, S. W., Stevenson, D. W., Wong, G. K-S., Gershenzon, J. & Chen, F., 25 Oct 2016, In : Proceedings of the National Academy of Sciences. 113, 43, p. 12328-12333 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Molecular diversity of terpene synthases in the liverwort Marchantia polymorpha

Kumar, S., Kempinski, C., Zhuang, X., Norris, A., Mafu, S., Zi, J., Bell, S. A., Nybo, S. E., Kinison, S. E., Jiang, Z., Goklany, S., Linscott, K. B., Chen, X., Jia, Q., Brown, S. D., Bowman, J., Babbitt, P. C., Peters, R. J., Chen, F. & Chappell, J., 1 Oct 2016, In : Plant Cell. 28, 10, p. 2632-2650 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Profiling and characterization of small RNAs in the liverwort, Marchantia polymorpha, belonging to the first diverged land plants

Tsuzuki, M., Nishihama, R., Ishizaki, K., Kurihara, Y., Matsui, M., Bowman, J. L., Kohchi, T., Hamada, T. & Watanabe, Y., 2016, In : Plant and Cell Physiology. 57, 2, p. 359-372 14 p.

Research output: Contribution to journalArticleResearchpeer-review

The naming of names: guidelines for gene nomenclature in Marchantia

Bowman, J. L., Araki, T., Arteaga-Vazquez, M. A., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S-S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y. & 3 othersYamato, K. T., Zachgo, S. & Kohchi, T., 1 Feb 2016, In : Plant and Cell Physiology. 57, 2, p. 257-261 5 p.

Research output: Contribution to journalArticleResearchpeer-review

2015

Antagonistic roles for KNOX1 and KNOX2 genes in patterning the land plant body plan following an ancient gene duplication

Furumizu, C., Alvarez, J. P., Sakakibara, K. & Bowman, J. L., 1 Feb 2015, In : PLoS Genetics. 11, 2, 24 p., e1004980.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A role of TDIF peptide signaling in vascular cell differentiation is conserved among euphyllophytes

Hirakawa, Y. & Bowman, J. L., 2015, In : Frontiers in Plant Science. 6, 10 p., 1048.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A simple auxin transcriptional response system regulates multiple morphogenetic processes in the liverwort Marchantia polymorpha

Flores Sandoval, E., Eklund, D. M. & Bowman, J. L., 2015, In : PLoS Genetics. 11, 5, 26 p., e1005207.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Auxin-mediated transcriptional system with a minimal set of components is critical for morphogenesis through the life cycle in Marchantia polymorpha

Kato, H., Ishizaki, K., Kouno, M., Shirakawa, M., Bowman, J. L., Nishihama, R. & Kohchi, T., 2015, In : PLoS Genetics. 11, 5, 26 p., e1005084.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Auxin produced by the indole-3-pyruvic acid pathway regulates development and gemmae dormancy in the liverwort Marchantia polymorpha

Eklund, D. M., Ishizaki, K., Flores-Sandoval, E., Kikuchi, S., Takebayashi, Y., Tsukamoto, S., Hirakawa, Y., Nonomura, M., Kato, H., Kouno, M., Bhalerao, R. P., Lagercrantz, U., Kasahara, H., Kohchi, T. & Bowman, J. L., 2015, In : Plant Cell. 27, 6, p. 1650-1669 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12

Jun, S. E., Cho, K-H., Hwang, J-Y., Abdel-Fattah, W., Hammermeister, A., Schaffrath, R., Bowman, J. L. & Kim, G-T., 2015, In : Molecules and Cells. 38, 3, p. 243-250 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Correction: Auxin-mediated transcriptional system with a minimal set of components is critical for morphogenesis through the life cycle in Marchantia polymorpha

Kato, H., Ishizaki, K., Kouno, M., Shirakawa, M., Bowman, J. L., Nishihama, R. & Kohchi, T., 26 Jun 2015, In : PLoS Genetics. 11, 6, 1 p., e1005365.

Research output: Contribution to journalComment / DebateOtherpeer-review

2014

Flower development: open questions and future directions

Wellmer, F., Bowman, J. L., Davies, B., Ferrandiz, C., Fletcher, J. C., Franks, R. G., Graciet, E., Gregis, V., Ito, T., Jack, T. P., Jiao, Y., Kater, M. M., Ma, H., Meyerowitz, E. M., Prunet, N. & Riechmann, J. L., 2014, Flower Development: Methods and Protocols. Riechmann, J. L. & Wellmer, F. (eds.). 1 ed. New York NY USA: Humana Press, p. 103-124 22 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor

Floyd, S. K., Ryan, J. G., Conway, S. J., Brenner, E., Burris, K. P., Burris, J. N., Chen, T., Edger, P. P., Graham, S. W., Leebens-Mack, J. H., Pires, J. C., Rothfels, C. J., Sigel, E. M., Stevenson, D. W., Stewart Jr, C. N., Wong, G. K-S. & Bowman, J. L., 2014, In : Molecular Phylogenetics and Evolution. 81, p. 159 - 173 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2013

Evolution of the class IV HD-Zip gene family in streptophytes

Zalewski, C. S., Floyd, S., Furumizu, C., Sakakibara, K., Stevenson, D. W. & Bowman, J. L., 2013, In : Molecular Biology and Evolution. 30, 10, p. 2347 - 2365 19 p.

Research output: Contribution to journalArticleResearchpeer-review

From cell to organism across space and time

Chang, C. & Bowman, J. L., 2013, In : Current Opinion in Plant Biology. 16, 5, p. 542 - 544 3 p.

Research output: Contribution to journalLetterOther

Genome-wide identification of KANADI1 target genes

Merelo, P., Xie, Y., Brand, L., Ott, F., Wiegel, D., Bowman, J. L., Heisler, M. G. & Wenkel, S., 2013, In : PLoS ONE. 8, 10, p. 1 - 14 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants

Sakakibara, K., Ando, S., Yip, H. K., Tamada, Y., Hiwatashi, Y., Murata, T., Deguchi, H., Hasebe, M. & Bowman, J. L., 2013, In : Science. 339, 6123, p. 1067 - 1070 4 p.

Research output: Contribution to journalArticleResearchpeer-review