Accepting PhD Students

PhD projects

Bioinformatics, computational biology, machine learning, pattern recognition, biomedical big data

20042020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Review Article
2020

Regulating polymyxin resistance in Gram-negative bacteria: roles of two-component systems PhoPQ and PmrAB

Huang, J., Li, C., Song, J., Velkov, T., Wang, L., Zhu, Y. & Li, J., 6 Apr 2020, In : Future Microbiology. 15, 6, p. 445-459 15 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

1 Citation (Scopus)
2019

A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction

Mei, S., Li, F., Leier, A., Marquez-Lago, T. T., Giam, K., Croft, N. P., Akutsu, T., Smith, A. I., Li, J., Rossjohn, J., Purcell, A. W. & Song, J., 14 Jun 2019, (Accepted/In press) In : Briefings in Bioinformatics. 17 p., bbz051.

Research output: Contribution to journalReview ArticleResearchpeer-review

An overview of bioinformatics methods for analyzing autism spectrum disorders

Nakashima, S., Nacher, J. C., Song, J. & Akutsu, T., 27 Nov 2019, In : Current Pharmaceutical Design. 25, 43, p. 4552-4559 8 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

2 Citations (Scopus)

iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites

Song, J., Wang, Y., Li, F., Akutsu, T., Rawlings, N. D., Webb, G. I. & Chou, K-C., 25 Mar 2019, In : Briefings in Bioinformatics. 20, 2, p. 638-658 21 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Open Access
File
80 Citations (Scopus)

Toward more accurate prediction of caspase cleavage sites: A comprehensive review of current methods, tools and features

Bao, Y., Marini, S., Tamura, T., Kamada, M., Maegawa, S., Hosokawa, H., Song, J. & Akutsu, T., Sep 2019, In : Briefings in Bioinformatics. 20, 5, p. 1669-1684 16 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Open Access
File
3 Citations (Scopus)
2018

Survey of predictors of propensity for protein production and crystallization with application to predict resolution of crystal structures

Gao, J., Wu, Z., Hu, G., Wang, K., Song, J., Joachimiak, A. & Kurgan, L., 2018, In : Current Protein and Peptide Science. 19, 2, p. 200-210 11 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

5 Citations (Scopus)