Jiangning Song

Research output

Research output per year 2004 2021 2022 2023 2024 2025

• 290 Article
• 19 Conference Paper
• 15 Review Article
• 7 Chapter (Book)
• 10 More
  • 4 Editorial
  • 3 Comment / Debate
  • 2 Letter
  • 1 Other contribution

Research output per year

Research output per year

Search results

• 2024

  A Hierarchical Hypergraph Attention Network for Survival Analysis from Pathological Images

  Cai, H., Yi, W., Huang, W., Wang, Z., Zhang, Y. & Song, J., 2024, 2024 IEEE International Symposium on Biomedical Imaging (ISBI). Golemati, S., Konofagou, E. E. & Chouvarda, I. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, 4 p. 10635794. (Proceedings - International Symposium on Biomedical Imaging).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  2 Citations (Scopus)

• Joint Segmentation of Primary Nasopharyngeal Carcinoma Tumors and Lymph Nodes via Global Attention

  Tao, G., Ling, Z., Li, H., Song, J. & Cai, H., 2024, Proceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024. Cannataro, M., Zheng, H., Gao, L., Cheng, J., de Miranda, J. L., Zumpano, E., Hu, X., Cho, Y.-R. & Park, T. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, p. 2489-2496 8 p. (Proceedings - 2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
• 2022

  A Regional Multiple Instance Learning Network for Whole Slide Image Segmentation

  Cai, H., Yi, W., Li, Y., Liao, W. & Song, J., 2022, Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine. Adjeroh, D., Long, Q., Shi, X., Guo, F., Hu, X., Aluru, S., Narasimhan, G., Wang, J., Kang, M., Mondal, A. M. & Liu, J. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, p. 922-928 7 p. (Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  4 Citations (Scopus)

• Feature Erasing and Diffusion Network for Occluded Person Re-Identification

  Wang, Z., Zhu, F., Tang, S., Zhao, R., He, L. & Song, J., 2022, 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). Dana, K., Hua, G., Roth, S., Samaras, D. & Singh, R. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, p. 4744-4753 10 p. (Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition; vol. 2022-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  144 Citations (Scopus)
• 2020

  PhosTransfer: a deep transfer learning framework for kinase-specific phosphorylation site prediction in hierarchy

  Xu, Y., Wilson, C., Leier, A., Marquez-Lago, T. T., Whisstock, J. & Song, J., 2020, Advances in Knowledge Discovery and Data Mining: 24th Pacific-Asia Conference, PAKDD 2020 Singapore, May 11–14, 2020 Proceedings, Part II. Lauw, H. W., Wong, R.C.-W., Ntoulas, A., Lim, E.-P., Ng, S.-K. & Pan, S. J. (eds.). Cham Switzerland: Springer, p. 384-395 12 p. (Lecture Notes in Computer Science; vol. 12085 ).

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

  Open Access

  File
  8 Citations (Scopus)

• Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning

  Ying, X., Leier, A., Marquez-Lago, T., Xie, J., Jimeno Yepes, A. J., Whisstock, J., Wilson, C. & Song, J., 2020, AMIA Annual Symposium Proceedings Volume 2020. Mendonca, E., Malin, B., Monsen, K., Walunas, T. & Wilcox, A. (eds.). USA: AMIA Annual Symposium Proceedings Archive, Vol. 2020. p. 1325-1334 10 p. PMC8075420

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

  Open Access

  File
• 2017

  Collaborative data analytics towards prediction on pathogen-host protein-protein interactions

  Chen, H., Shen, J., Wang, L. & Song, J., 12 Oct 2017, 2017 IEEE 21st International Conference on Computer Supported Cooperative Work in Design (CSCWD). Shen, W., Antunes, P., Thuan, N. H., Barthes, J.-P., Luo, J. & Yong, J. (eds.). 1st ed. IEEE, Institute of Electrical and Electronics Engineers, p. 269-274 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  4 Citations (Scopus)

• Leveraging Stacked Denoising Autoencoder in Prediction of Pathogen-Host Protein-Protein Interactions

  Chen, H., Shen, J., Wang, L. & Song, J., 7 Sept 2017, 2017 IEEE International Congress on Big Data: BigData Congress. Karypis, G. & Zhang, J. (eds.). 1st ed. IEEE, Institute of Electrical and Electronics Engineers, p. 368-375 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  12 Citations (Scopus)

• Preface

  Wang, Y., Burrage, K., Liu, Y., Morishita, S., Tian, T., Jiang, Q., Song, J., Wang, G., Zhu, Q. & Hu, X. T., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Other › peer-review

• Towards Elucidating the Structural Principles of Host-Pathogen Protein-Protein Interaction Networks: A Bioinformatics Survey

  Chen, H., Song, J., Sun, G., Shen, J. & Wang, L., 7 Sept 2017, 2017 IEEE International Congress on Big Data: Big Data Congress. Karypis, G. & Zhang, J. (eds.). 1st ed. IEEE, Institute of Electrical and Electronics Engineers, p. 177-184 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  1 Citation (Scopus)
• 2016

  Host-Pathogen Protein Interaction Prediction Based on Local Topology Structures of a Protein Interaction Network

  Jindalertudomdee, J., Hayashida, M., Song, J. & Akutsu, T., 16 Dec 2016, Proceedings - 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering, BIBE 2016. Piscataway, NJ: IEEE, Institute of Electrical and Electronics Engineers, p. 7-12 6 p. 7789953

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  3 Citations (Scopus)

• Towards data analytics of pathogen-host protein-protein interaction: A survey

  Chen, H., Shen, J., Wang, L. & Song, J., 5 Oct 2016, Proceedings - 2016 IEEE International Congress on Big Data, BigData Congress 2016. Pu, C., Fox, G. & Damiani, E. (eds.). IEEE, Institute of Electrical and Electronics Engineers, p. 377-388 12 p. 7584966

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  10 Citations (Scopus)
• 2015

  Fabrication of high-Q lithium niobate microresonators using femtosecond laser micromachining for second harmonic generation

  Lin, J., Xu, Y., Fang, Z., Wang, M., Song, J., Wang, N., Qiao, L., Fang, W. & Cheng, Y., 10 Aug 2015, 2015 Conference on Lasers and Electro-Optics, CLEO 2015. IEEE, Institute of Electrical and Electronics Engineers, Vol. 2015-August. 7184057

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Other › peer-review

  1 Citation (Scopus)
• 2012

  Predicting protein-RNA residue-base contacts using two-dimensional conditional random field

  Hayashida, M., Kamada, M., Song, J. & Akutsu, T., 2012, 2012 IEEE 6th International Conference on Systems Biology, ISB 2012. Wu, L.-Y. & Horimoto, K. (eds.). USA: IEEE, Institute of Electrical and Electronics Engineers, Vol. 1. p. 152 - 157 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Other › peer-review
  1 Citation (Scopus)
• 2011

  Discriminative random field approach to prediction of protein residue contacts

  Kamada, M., Hayashida, M., Song, J. & Akutsu, T., 2011, 2011 IEEE Conference on Systems Biology (ISB). Chen, L., Zhang, X. S. & Wang, Y. (eds.). China: IEEE, Institute of Electrical and Electronics Engineers, Vol. 2011. p. 285 - 291 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
  3 Citations (Scopus)

• Exploring drug combinations in a drug-cocktail network

  Xu, K.-J., Hu, F.-Y., Song, J. & Zhao, X.-M., 2011, 2011 IEEE Conference on Systems Biology (ISB). Chen, L., Zhang, X. S. & Wang, Y. (eds.). China: IEEE, Institute of Electrical and Electronics Engineers, Vol. 2011. p. 382 - 387 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

  10 Citations (Scopus)

• Predicting functional impact of single amino acid polymorphisms by integrating sequence and structural features

  Wang, M., Shen, H.-B., Akutsu, T. & Song, J., 2011, 2011 IEEE Conference on Systems Biology 2011. Chen, L., Zhang, X. S. & Wang, Y. (eds.). China: IEEE, Institute of Electrical and Electronics Engineers, p. 18 - 26 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

  3 Citations (Scopus)
• 2010

  A Network Biology Approach to Understand Combination of Drugs

  Xu, K.-J., Song, J. & Zhao, X.-M., 2010, The 4th International Conference on Computational Systems Biology (ISB2010). Chen, L., Zhang, X. S. & Wang, Y. (eds.). China: IEEE, Institute of Electrical and Electronics Engineers, p. 347 - 354 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review

• Conditional Random Field Approach to Prediction of Protein-Protein Interactions Using Mutual Information Between Domains

  Hayashida, M., Kamada, M., Song, J. & Akutsu, T., 2010, The 4th International Conference on Computational Systems Biology (ISB2010). Chen, L., Zhang, X. S. & Wang, Y. (eds.). China: IEEE, Institute of Electrical and Electronics Engineers, p. 276 - 284 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review