If you made any changes in Pure these will be visible here soon.

Research Output 2013 2019

2019

Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii

Boinett, C. J., Cain, A. K., Hawkey, J., Do Hoang, N. T., Khanh, N. N. T., Thanh, D. P., Dordel, J., Campbell, J. I., Lan, N. P. H., Mayho, M., Langridge, G. C., Hadfield, J., Chau, N. V. V., Thwaites, G. E., Parkhill, J., Thomson, N. R., Holt, K. E. & Baker, S., 1 Feb 2019, In : Microbial genomics. 5, 2, 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

Wyres, K. L., Hawkey, J., Hetland, M. A. K., Fostervold, A., Wick, R. R., Judd, L. M., Hamidian, M., Howden, B. P., Löhr, I. H. & Holt, K. E., 1 Mar 2019, In : Journal of Antimicrobial Chemotherapy. 74, 3, p. 577-581 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

Hamidian, M., Hawkey, J., Wick, R., Holt, K. E. & Hall, R. M., 1 Jan 2019, In : Microbial genomics. 5, 1, 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

Hawkey, J., Le Hello, S., Doublet, B., Granier, S. A., Hendriksen, R. S., Florian Fricke, W., Ceyssens, P. J., Gomart, C., Billman-Jacobe, H., Holt, K. E. & Weill, F. X., 1 Jul 2019, In : Microbial genomics. 5, 7, 12 p., 000269.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2018

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

Hawkey, J., Ascher, D. B., Judd, L. M., Wick, R. R., Kostoulias, X., Cleland, H., Spelman, D. W., Padiglione, A., Peleg, A. Y. & Holt, K. E., Mar 2018, In : Microbial genomics. 4, 3, 11 p., 000165.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2016

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

Wong, V. K., Baker, S., Connor, T. R., Pickard, D., Page, A. J., Dave, J., Murphy, N. C., Holliman, R., Sefton, A., Millar, M., Dyson, Z. A., Dougan, G., Holt, K. E. & International Typhoid Consortium, 5 Oct 2016, In : Nature Communications. 7, 11 p., 12827.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Genome-scale rates of evolutionary change in bacteria

Duchêne, S., Holt, K. E., Weill, F. X., Le Hello, S., Hawkey, J., Edwards, D. J., Fourment, M. & Holmes, E. C., 1 Nov 2016, In : Microbial genomics. 2, 11, 12 p., e000094.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Genome sequence of Acinetobacter baumannii strain A1, an early example of antibioticresistant global clone 1

Holt, K. E., Hamidian, M., Kenyon, J. J., Wynn, M. T., Hawkey, J., Pickard, D. & Hall, R. M., 1 Jan 2016, In : Genome Announcements. 3, 2, 2 p., e00032-15.

Research output: Contribution to journalArticleOtherpeer-review

Open Access

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Weill, F. X., Njamkepo, E., Fawal, N., Tran-Dien, A., Hawkey, J., Strockbine, N., Jenkins, C., Talukder, K. A., Bercion, R., Kuleshov, K., Kolínská, R., Russell, J. E., Kaftyreva, L., Accou-Demartin, M., Karas, A., Vandenberg, O., Mather, A. E., Mason, C. J., Page, A. J., Ramamurthy, T. & 52 othersBizet, C., Gamian, A., Carle, I., Sow, A. G., Bouchier, C., Wester, A. L., Lejay-Collin, M., Fonkoua, M. C., Le Hello, S., Blaser, M. J., Jernberg, C., Ruckly, C., Mérens, A., Page, A. L., Aslett, M., Roggentin, P., Fruth, A., Denamur, E., Venkatesan, M., Bercovier, H., Bodhidatta, L., Chiou, C. S., Clermont, D., Colonna, B., Egorova, S., Pazhani, G. P., Ezernitchi, A. V., Guigon, G., Harris, S. R., Izumiya, H., Korzeniowska-Kowal, A., Lutyhska, A., Gouali, M., Grimont, F., Langendorf, C., Marejková, M., Peterson, L. A. M., Perez-Perez, G., Ngandjio, A., Podkolzin, A., Souche, E., Makarova, M., Shipulin, G. A., Ye, C., Žemličková, H., Herpay, M., Grimont, P. A. D., Parkhill, J., Sansonetti, P., Holt, K. E., Brisse, S. & Thomson, N. R., 1 Mar 2016, In : Nature Microbiology. 1, 4, 10 p., 16027.

Research output: Contribution to journalArticleResearchpeer-review

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

Schultz, M. B., Thanh, D. P., Hoan, N. T. D., Wick, R. R., Ingle, D. J., Hawkey, J., Edwards, D. J., Kenyon, J. J., Lan, N. P. H., Campbell, J. I., Thwaites, G., Nhu, N. T. K., Hall, R. M., Fournier-Level, A., Baker, S. & Holt, K. E., 2 Mar 2016, In : Microbial genomics. 2, 3, p. 1-15 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2015

Genome sequence of Acinetobacter baumannii strain D36, an antibiotic-resistant isolate from lineage 2 of global clone 1

Hamidian, M., Hawkey, J., Holt, K. E. & Hall, R. M., 1 Jan 2015, In : Genome Announcements. 3, 6, 2 p., e0147815.

Research output: Contribution to journalArticleOtherpeer-review

Open Access

ISMapper: Identifying transposase insertion sites in bacterial genomes from short read sequence data

Hawkey, J., Hamidian, M., Wick, R. R., Edwards, D. J., Billman-Jacobe, H., Hall, R. M. & Holt, K. E., 3 Sep 2015, In : BMC Genomics. 16, 1, 11 p., 667.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Multiple genetic mutations associated with polymyxin resistance in Acinetobacter baumannii

Lim, T. P., Ong, R. T. H., Hon, P. Y., Hawkey, J., Holt, K. E., Koh, T. H., Leong, M. L. N., Teo, J. Q. M., Tan, T. Y., Ng, M. M. L. & Hsu, L. Y., 1 Dec 2015, In : Antimicrobial Agents and Chemotherapy. 59, 12, p. 7899-7902 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events

Wong, V. K., Baker, S., Pickard, D. J., Parkhill, J., Page, A. J., Feasey, N. A., Kingsley, R. A., Thomson, N. R., Keane, J. A., Weill, F. X., Edwards, D. J., Hawkey, J., Harris, S. R., Mather, A. E., Cain, A. K., Hadfield, J., Hart, P. J., Thieu, N. T. V., Klemm, E. J., Glinos, D. A. & 54 othersBreiman, R. F., Watson, C. H., Kariuki, S., Gordon, M. A., Heyderman, R. S., Okoro, C., Jacobs, J., Lunguya, O., Edmunds, W. J., Msefula, C., Chabalgoity, J. A., Kama, M., Jenkins, K., Dutta, S., Marks, F., Campos, J., Thompson, C., Obaro, S., Maclennan, C. A., Dolecek, C., Keddy, K. H., Smith, A. M., Parry, C. M., Karkey, A., Mulholland, E. K., Campbell, J. I., Dongol, S., Basnyat, B., Dufour, M., Bandaranayake, D., Naseri, T. T., Singh, S. P., Hatta, M., Newton, P., Onsare, R. S., Isaia, L., Dance, D., Davong, V., Thwaites, G., Wijedoru, L., Crump, J. A., De Pinna, E., Nair, S., Nilles, E. J., Thanh, D. P., Turner, P., Soeng, S., Valcanis, M., Powling, J., Dimovski, K., Hogg, G., Farrar, J., Holt, K. E. & Dougan, G., 27 May 2015, In : Nature Genetics. 47, 6, p. 632-639 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2013

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

Hawkey, J., Edwards, D. J., Dimovski, K., Hiley, L., Billman-Jacobe, H., Hogg, G. & Holt, K. E., 19 Nov 2013, In : BMC Genomics. 14, 1, 15 p., 800.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File