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Research Output 2009 2019

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2018
5 Citations (Scopus)

An orthotopic mouse model of gastric cancer invasion and metastasis

Busuttil, R. A., Liu, D. S., Di Costanzo, N., Schröder, J., Mitchell, C. & Boussioutas, A., 16 Jan 2018, In : Scientific Reports. 8, 1, 8 p., 825.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

The Scalloped and Nerfin-1 Transcription Factors Cooperate to Maintain Neuronal Cell Fate

Vissers, J. H. A., Froldi, F., Schroder, J., Papenfuss, A. T., Cheng, L. Y. & Harvey, K. F., 6 Nov 2018, In : Cell Reports. 25, 6, p. 1561-1576 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2017
9 Citations (Scopus)

A forward genetic screen identifies a negative regulator of rapid Ca2+-dependent cell egress (MS1) in the intracellular parasite Toxoplasma gondii

McCoy, J. M., Stewart, R. J., Uboldi, A. D., Li, D., Schröder, J., Scott, N. E., Papenfuss, A. T., Lehane, A. M., Foster, L. J. & Tonkin, C. J., 5 May 2017, In : Journal of Biological Chemistry. 292, 18, p. 7662-7674 13 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

CLOVE: Classification of genomic fusions into structural variation events

Schröder, J., Wirawan, A., Schmidt, B. & Papenfuss, A. T., 20 Jul 2017, In : BMC Bioinformatics. 18, 1, 10 p., 346.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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12 Citations (Scopus)

Genomic characterisation of Eμ-Myc mouse lymphomas identifies Bcor as a Myc co-operative tumour-suppressor gene

Lefebure, M., Tothill, R. W., Kruse, E., Hawkins, E. D., Shortt, J., Matthews, G. M., Gregory, G. P., Martin, B. P., Kelly, M. J., Todorovski, I., Doyle, M. A., Lupat, R., Li, J., Schroeder, J., Wall, M., Craig, S., Poortinga, G., Cameron, D., Bywater, M., Kats, L. & 6 others, Gearhart, M. D., Bardwell, V. J., Dickins, R. A., Hannan, R. D., Papenfuss, A. T. & Johnstone, R. W., 6 Mar 2017, In : Nature Communications. 8, 14581.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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21 Citations (Scopus)

GRIDSS: Sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Cameron, D. L., Schröder, J., Penington, J. S., Do, H., Molania, R., Dobrovic, A., Speed, T. P. & Papenfuss, A. T., 1 Dec 2017, In : Genome Research. 27, 12, p. 2050-2060 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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HYSYS: Have you swapped your samples?

Schröder, J., Corbin, V. & Papenfuss, A. T., 15 Feb 2017, In : Bioinformatics. 33, 4, p. 596-598 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2015
6 Citations (Scopus)

Embryonic lethality in homozygous human Her-2 transgenic mice due to disruption of the Pds5b gene

Yong, C. S. M., Sharkey, J., Duscio, B., Venville, B., Wei, W-Z., Jones, R. F., Slaney, C. Y., Mir Arnau, G., Papenfuss, A. T., Schroder, J. F., Darcy, P. K. & Kershaw, M. H., 2015, In : PLoS ONE. 10, 9, 18 p., e0136817.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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4 Citations (Scopus)

Expression of a chimeric antigen receptor in multiple leukocyte lineages in transgenic mice

Yong, C. S. M., Westwood, J. A., Schroder, J. F., Papenfuss, A. T., von Scheidt, B., Moeller, M., Devaud, C., Darcy, P. K. & Kershaw, M. H., 2015, In : PLoS ONE. 10, 10, 28 p., e0140543.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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3 Citations (Scopus)

Improving the power of structural variation detection by augmenting the reference

Schröder, J., Girirajan, S., Papenfuss, A. T. & Medvedev, P., 31 Aug 2015, In : PLoS ONE. 10, 8, 10 p., e0136771.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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101 Citations (Scopus)

UV-associated mutations underlie the etiology of MCV-negative Merkel cell carcinomas

Wong, S. Q., Waldeck, K., Vergara, I. A., Schröder, J., Madore, J., Wilmott, J. S., Colebatch, A. J., De Paoli-Iseppi, R., Li, J., Lupat, R., Semple, T., Arnau, G. M., Fellowes, A., Leonard, J. H., Hruby, G., Mann, G. J., Thompson, J. F., Cullinane, C., Johnston, M., Shackleton, M. & 10 others, Sandhu, S., Bowtell, D. D. L., Johnstone, R. W., Fox, S. B., McArthur, G. A., Papenfuss, A. T., Scolyer, R. A., Gill, A. J., Hicks, R. J. & Tothill, R. W., 15 Dec 2015, In : Cancer Research. 75, 24, p. 5228-5234 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2014
20 Citations (Scopus)

HECTOR: A parallel multistage homopolymer spectrum based error corrector for 454 sequencing data

Wirawan, A., Harris, R. S., Liu, Y., Schmidt, B. & Schröder, J., 6 May 2014, In : BMC Bioinformatics. 15, 1, 13 p., 131.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
38 Citations (Scopus)

Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads

Schröder, J., Hsu, A., Boyle, S. E., Macintyre, G., Cmero, M., Tothill, R. W., Johnstone, R. W., Shackleton, M. & Papenfuss, A. T., 1 Jan 2014, In : Bioinformatics. 30, 8, p. 1064-1072 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
62 Citations (Scopus)

The Architecture and Evolution of Cancer Neochromosomes

Garsed, D. W., Marshall, O. J., Corbin, V. D. A., Hsu, A., DiStefano, L., Schröder, J., Li, J., Feng, Z. P., Kim, B. W., Kowarsky, M., Lansdell, B., Brookwell, R., Myklebost, O., Meza-Zepeda, L., Holloway, A. J., Pedeutour, F., Choo, K. H. A., Damore, M. A., Deans, A. J., Papenfuss, A. T. & 1 others, Thomas, D. M., 10 Nov 2014, In : Cancer Cell. 26, 5, p. 653-667 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2013
119 Citations (Scopus)

Musket: A multistage k-mer spectrum-based error corrector for Illumina sequence data

Liu, Y., Schröder, J. & Schmidt, B., 1 Feb 2013, In : Bioinformatics. 29, 3, p. 308-315 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2011
102 Citations (Scopus)

Correcting errors in short reads by multiple alignments

Salmela, L. & Schröder, J., 1 Jun 2011, In : Bioinformatics. 27, 11, p. 1455-1461 7 p., btr170.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2010
15 Citations (Scopus)

Reference-free validation of short read data

Schröder, J., Bailey, J., Conway, T. & Zobel, J., 29 Oct 2010, In : PLoS ONE. 5, 9, p. 1-11 11 p., e12681.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2009
105 Citations (Scopus)

SHREC: A short-read error correction method

Schröder, J., Schröder, H., Puglisi, S. J., Sinha, R. & Schmidt, B., 14 Sep 2009, In : Bioinformatics. 25, 17, p. 2157-2163 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access