1993 …2019
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Research Output 1993 2017

2017

Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics

Edwards, R. D., Crisp, M. D., Cook, D. H. & Cook, L. G., 1 Apr 2017, In : PLoS ONE. 12, 4, e0174812.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Model choice and diagnostics for linear mixed-effects models using statistics on street corners

Loy, A., Hofmann, H. & Cook, D., 2017, In : Journal of Computational and Graphical Statistics. 26, 3, p. 478-492 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2016

Data visualization and statistical graphics in big data analysis

Cook, D., Lee, E-K. & Majumder, M., 1 Jun 2016, In : Annual Review of Statistics and Its Application. 3, p. 133-159 27 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Enabling Interactivity on Displays of Multivariate Time Series and Longitudinal Data

Cheng, X., Cook, D. & Hofmann, H., 1 Oct 2016, In : Journal of Computational and Graphical Statistics. 25, 4, p. 1057-1076 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Escape from boxland: Generating a library of high-dimensional geometric shapes

Schloerke, B., Wickham, H., Cook, D. & Hofmann, H., Dec 2016, In : The R Journal. 8, 2, p. 243-257 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2015

Authors' response to discussants

Wickham, H., Cook, D. & Hofmann, H., 1 Aug 2015, In : Statistical Analysis and Data Mining. 8, 4, p. 242-244 3 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Does host-plant diversity explain species richness in insects? A test using Coccidae (Hemiptera)

Lin, Y-P., Cook, D. H., Gullan, P. J. & Cook, L. G., 2015, In : Ecological Entomology. 40, 3, p. 299 - 306 8 p.

Research output: Contribution to journalArticleResearchpeer-review

On the move at DinoFun world

Hofmann, H., Cook, D., Kaplan, A., Hare, E., Leos-Barajas, V., Sievert, C. & Tyner, S., 4 Dec 2015, 2015 IEEE Conference on Visual Analytics Science and Technology: Chicago, Illinois, USA - 25-30 October 2015 - Proceedings. Chen, M. & Andrienko, G. (eds.). Danvers MA USA: IEEE, Institute of Electrical and Electronics Engineers, p. 159-160 2 p. 7347659

Research output: Chapter in Book/Report/Conference proceedingConference PaperOther

Using visual statistical inference to better understand random class separations in high dimension, low sample size data

Chowdhury, N. R., Cook, D. H., Hofmann, H., Majumder, M., Lee, E-K. & Toth, A. L., 2015, In : Computational Statistics. 30, 2, p. 293 - 316 24 p.

Research output: Contribution to journalArticleResearchpeer-review

Visualizing communication patterns at DinoFun World

Hofmann, H., Cook, D., Kaplan, A., Hare, E., Leos-Barajas, V., Sievert, C. & Tyner, S., 4 Dec 2015, 2015 IEEE Conference on Visual Analytics Science and Technology: Chicago, Illinois, USA - 25-30 October 2015 - Proceedings. Chen, M. & Andrienko, G. (eds.). Danvers MA USA: IEEE, Institute of Electrical and Electronics Engineers, p. 161-162 2 p. 7347660

Research output: Chapter in Book/Report/Conference proceedingConference PaperOther

Visualizing statistical models: Removing the blindfold

Wickham, H., Cook, D. H. & Hofmann, H., 2015, In : Statistical Analysis and Data Mining. 8, 4, p. 203 - 225 23 p.

Research output: Contribution to journalArticleResearchpeer-review

Visually exploring missing values in multivariable data using a graphical user interface

Cheng, X., Cook, D. H. & Hofmann, H., 2015, In : Journal of Statistical Software. 68, 6, p. 1 - 23 23 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2014

Four papers on contemporary software design strategies for statistical methodologists

Carey, V. & Cook, D., 2014, In : Applied Statistical Science. 29, 2, p. 165-166 2 p.

Research output: Contribution to journalArticleOtherpeer-review

Identification of candidate genes involved in early iron deficiency chlorosis signaling in soybean (Glycine max) roots and leaves

Moran Lauter, A. N., Peiffer, G. A., Yin, T., Whitham, S. A., Cook, D., Shoemaker, R. C. & Graham, M. A., 22 Aug 2014, In : BMC Genomics. 15, 25 p., 702.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Replication protein A subunit 3 and the iron efficiency response in soybean

Atwood, S. E., O'Rourke, J. A., Peiffer, G. A., Yin, T., Majumder, M., Zhang, C., Cianzio, S. R., Hill, J. H., Cook, D., Whitham, S. A., Shoemaker, R. C. & Graham, M. A., Jan 2014, In : Plant Cell and Environment. 37, 1, p. 213-234 22 p.

Research output: Contribution to journalArticleResearchpeer-review

The 2011 data Expo of the American Statistical Association

Cook, D., Feb 2014, In : Computational Statistics. 29, 1-2, p. 117-119 3 p.

Research output: Contribution to journalEditorialOtherpeer-review

2013

An algorithm for deciding the number of clusters and validation using simulated data with application to exploring crop population structure

Newell, M., Cook, D. H., Hofmann, H. & Jannink, J-L., 2013, In : The Annals of Applied Statistics. 7, 4, p. 1898 - 1916 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Gradient-based habitat affinities predict species vulnerability to drought

Debinski, D. M., Caruthers, J. C., Cook, D. H., Crowley, J. & Wickham, H., 2013, In : Ecology. 94, 5, p. 1036 - 1045 10 p.

Research output: Contribution to journalArticleResearchpeer-review

HIV dynamics impacting the efficacy of HIV/AIDS treatments

Towfic, G., Graziano, F., Towfic, F., Dorman, K., Cook, D., Kettoola, S. & Neal, L., 2013, In : Journal of Proteomics and Bioinformatics. 6, 3, p. 51-57 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

In tennis, do smashes win matches?

Budrus, S., Plas, S. V. & Cook, D., Jun 2013, In : Significance. 10, 3, p. 35-38 4 p.

Research output: Contribution to journalComment / DebateResearchpeer-review

Let graphics tell the story - datasets in R

Unwin, A., Hofmann, H. & Cook, D., Jun 2013, In : The R Journal. 5, 1, p. 117-129 13 p.

Research output: Contribution to journalArticleResearchpeer-review

PPtree: Projection pursuit classification tree

Lee, Y. D., Cook, D. H., Park, J. & Lee, E-K., 2013, In : Electronic Journal of Statistics. 7, 1, p. 1369 - 1386 18 p.

Research output: Contribution to journalArticleResearchpeer-review

The generalized pairs plot

Emerson, J. W., Green, W. A., Schloerke, B., Crowley, J., Cook, D., Hofmann, H. & Wickham, H., 2013, In : Journal of Computational and Graphical Statistics. 22, 1, p. 79-91 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Validation of visual statistical inference, applied to linear models

Majumder, M., Hofmann, H. & Cook, D., 2013, In : Journal of the American Statistical Association. 108, 503, p. 942 - 956 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2012

BirdsEyeView (BEV): graphical overviews of experimental data

Zhang, L., Berleant, D., Wang, Y., Li, L., Cook, D. & Wurtele, E. S., Sep 2012, In : BMC Bioinformatics. 13, Suppl 15, 10 p., S11.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

ggbio: An R package for extending the grammar of graphics for genomic data

Yin, T., Cook, D. & Lawrence, M., 31 Aug 2012, In : Genome Biology. 13, 14 p., R77.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Glyph-maps for visually exploring temporal patterns in climate data and models

Wickham, H., Hofmann, H., Wickham, C. & Cook, D., Aug 2012, In : Environmetrics. 23, 5, p. 382-393 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Graphical tests for power comparison of competing designs

Hofmann, H., Follett, L., Majumder, M. & Cook, D., 2012, In : IEEE Transactions on Visualization and Computer Graphics. 18, 12, p. 2441-2448 8 p., 6327249.

Research output: Contribution to journalArticleResearchpeer-review

tourrGui: A gWidgets GUI for the tour to explore high-dimensional data using low-dimensional projections

Huang, B., Cook, D. & Wickham, H., Jun 2012, In : Journal of Statistical Software. 49, p. 1-12 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2011

Delayed, canceled, on time, boarding... flying in the USA

Hofmann, H., Cook, D., Kielion, C., Schloerke, B., Hobbs, J., Loy, A., Mosley, L., Rockoff, D., Huang, Y., Wrolstad, D. & Yin, T., Jun 2011, In : Journal of Computational and Graphical Statistics. 20, 2, p. 287-290 4 p.

Research output: Contribution to journalArticleOtherpeer-review

PKgraph: An R package for graphically diagnosing population pharmacokinetic models

Sun, X., Wu, K. & Cook, D., Dec 2011, In : Computer Methods and Programs in Biomedicine. 104, 3, p. 461-471 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Population structure and linkage disequilibrium in oat (Avena sativa L.): Implications for genome-wide association studies

Newell, M. A., Cook, D., Tinker, N. A. & Jannink, J. L., Feb 2011, In : Theoretical and Applied Genetics. 122, 3, p. 623-632 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Tips for presenting your work

Cook, D., 2011, In : The R Journal. 3, 1, p. 72-74 3 p.

Research output: Contribution to journalArticleOtherpeer-review

Tourr: An R package for exploring multivariate data with projections

Wickham, H., Cook, D., Hofmann, H. & Buja, A., Apr 2011, In : Journal of Statistical Software. 40, 2, p. 1-18 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2010

A projection pursuit index for large p small n data

Lee, E-K. & Cook, D. H., 2010, In : Statistics and Computing. 20, 3, p. 381 - 392 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Editorial: Publishing animations, 3D visualizations, and movies in JCGS

Levine, R. A., Tierney, L., Wickham, H., Sampson, E., Cook, D. & Vvn Dyk, D. A., 2010, In : Journal of Computational and Graphical Statistics. 19, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorialOtherpeer-review

Glaciers melt as mountains warm: A graphical case study

Hobbs, A. J., Wickham, H. & Cook, D., Dec 2010, In : Computational Statistics. 25, 4, p. 569-586 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Graphical inference for infovis

Wickham, H., Cook, D., Hofmann, H. & Buja, A., 2010, In : IEEE Transactions on Visualization and Computer Graphics. 16, 6, p. 973-979 7 p., 5613434.

Research output: Contribution to journalArticleResearchpeer-review

2009

Extending the GGobi pipeline from R: RRapid prototyping of interactive visualizations

Lawrence, M., Wickham, H., Cook, D., Hofmann, H. & Swayne, D. F., May 2009, In : Computational Statistics. 24, 2, p. 195-205 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Incorporating exploratory methods using dynamic graphics into multivariate statistics classes: Curriculum development

Cook, D., 2009, Quality Research in Literacy and Science Education: International Perspectives and Gold Standards. Springer, p. 337-355 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

Statistical inference for exploratory data analysis and model diagnostics

Buja, A., Cook, D., Hofmann, H., Lawrence, M., Lee, E-K., Swayne, D. F. & Wickham, H., 13 Nov 2009, In : Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 367, 1906, p. 4361-4383 23 p.

Research output: Contribution to journalArticleResearchpeer-review

The plumbing of interactive graphics

Wickham, H., Lawrence, M., Cook, D., Buja, A., Hofmann, H. & Swayne, D. F., May 2009, In : Computational Statistics. 24, 2, p. 207-215 9 p.

Research output: Contribution to journalArticleResearchpeer-review

2008

Explorase: Multivariate exploratory analysis and visualization for systems biology

Lawrence, M., Cook, D., Lee, E. K., Babka, H. & Wurtele, E. S., 1 Jan 2008, In : Journal of Statistical Software. 25, 9, p. 1-23 23 p.

Research output: Contribution to journalArticleResearchpeer-review

2005

BarleyBase - An expression profiling database for plant genomics

Shen, L., Gong, J., Caldo, R. A., Nettleton, D., Cook, D., Wise, R. P. & Dickerson, J. A., 1 Jan 2005, In : Nucleic Acids Research. 33, DATABASE ISS.

Research output: Contribution to journalArticleResearchpeer-review

Projection pursuit for exploratory supervised classification

Lee, E. K., Cook, D., Klinke, S. & Lumley, T., 1 Dec 2005, In : Journal of Computational and Graphical Statistics. 14, 4, p. 831-846 16 p.

Research output: Contribution to journalArticleResearchpeer-review

2004

Computational Methods for High-Dimensional Rotations in Data Visualization

Buja, A., Cook, D., Asimov, D. & Hurley, C., 1 Dec 2004, Data Mining and Data Visualization. Rao, C. R., Wegman, O. & Solka, J. L. (eds.). p. 391-413 23 p. (Handbook of Statistics; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Researchpeer-review

2003

A Projection Pursuit Method on the Multidimensional Squared Contingency Table

Ahn, J. S., Hofmann, H. & Cook, D., 1 Jan 2003, In : Computational Statistics. 18, 4, p. 605-626 22 p.

Research output: Contribution to journalArticleResearchpeer-review

GGobi: Evolving from XGobi into an extensible framework for interactive data visualization

Swayne, D. F., Temple Lang, D., Buja, A. & Cook, D., 28 Aug 2003, In : Computational Statistics and Data Analysis. 43, 4, p. 423-444 22 p.

Research output: Contribution to journalArticleResearchpeer-review

MetNet: Software to build and model the biogenetic lattice of Arabidopsis

Wurtele, E. S., Li, J., Diao, L., Zhang, H., Foster, C. M., Fatland, B., Dickerson, J., Brown, A., Cox, Z., Cook, D., Lee, E. K. & Hofmann, H., 1 Apr 2003, In : Comparative and Functional Genomics. 4, 2, p. 239-245 7 p.

Research output: Contribution to journalArticleResearchpeer-review

2002

Visualising high-dimensional data in time and space: Ideas from the Orca project

Lumley, T., Sutherland, P., Rossini, A., Lewin-Koh, N., Cook, D. & Cox, Z., 28 Jan 2002, In : Chemometrics and Intelligent Laboratory Systems. 60, 1-2, p. 189-195 7 p.

Research output: Contribution to journalArticleResearchpeer-review