20022021

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  • 2021

    Alcohol consumption is associated with widespread changes in blood DNA methylation: Analysis of cross-sectional and longitudinal data

    Dugué, P-A., Wilson, R., Lehne, B., Jayasekara, H., Wang, X., Jung, C. H., Joo, J. H. E., Makalic, E., Schmidt, D. F., Baglietto, L., Severi, G., Gieger, C., Ladwig, K. H., Peters, A., Kooner, J. S., Southey, M. C., English, D. R., Waldenberger, M., Chambers, J. C., Giles, G. G. & 1 others, Milne, R. L., Jan 2021, In : Addiction Biology. 26, 1, 13 p., e12855.

    Research output: Contribution to journalArticleResearchpeer-review

    4 Citations (Scopus)
  • Novel mammogram-based measures improve breast cancer risk prediction beyond an established mammographic density measure

    Nguyen, T. L., Schmidt, D. F., Makalic, E., Maskarinec, G., Li, S., Dite, G. S., Aung, Y. K., Evans, C. F., Trinh, H. N., Baglietto, L., Stone, J., Song, Y. M., Sung, J., MacInnis, R. J., Dugué, P. A., Dowty, J. G., Jenkins, M. A., Milne, R. L., Southey, M. C., Giles, G. G. & 1 others, Hopper, J. L., 1 May 2021, In : International Journal of Cancer. 148, 9, p. 2193-2202 10 p.

    Research output: Contribution to journalArticleResearchpeer-review

  • 2020

    An efficient algorithm for sampling from sink (x) for generating random correlation matrices

    Makalic, E. & Schmidt, D. F., 19 Jul 2020, (Accepted/In press) In : Communications in Statistics - Simulation and Computation. 5 p.

    Research output: Contribution to journalArticleResearchpeer-review

  • Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes

    Fachal, L., Aschard, H., Beesley, J., Barnes, D. R., Allen, J., Kar, S., Pooley, K. A., Dennis, J., Michailidou, K., Turman, C., Soucy, P., Lemaçon, A., Lush, M., Tyrer, J. P., Ghoussaini, M., Marjaneh, M. M., Jiang, X., Agata, S., Aittomäki, K., Alonso, M. R. & 234 others, Andrulis, I. L., Anton-Culver, H., Antonenkova, N. N., Arason, A., Arndt, V., Aronson, K. J., Arun, B. K., Auber, B., Auer, P. L., Azzollini, J., Balmaña, J., Barkardottir, R. B., Barrowdale, D., Beeghly-Fadiel, A., Benitez, J., Bermisheva, M., Białkowska, K., Blanco, A. M., Blomqvist, C., Blot, W., Bogdanova, N. V., Bojesen, S. E., Bolla, M. K., Bonanni, B., Borg, A., Bosse, K., Brauch, H., Brenner, H., Briceno, I., Brock, I. W., Brooks-Wilson, A., Brüning, T., Burwinkel, B., Buys, S. S., Cai, Q., Caldés, T., Caligo, M. A., Camp, N. J., Campbell, I., Canzian, F., Carroll, J. S., Carter, B. D., Castelao, J. E., Chiquette, J., Christiansen, H., Chung, W. K., Claes, K. B. M., Clarke, C. L., Mari, V., Berthet, P., Castera, L., Vaur, D., Lallaoui, H., Bignon, Y. J., Uhrhammer, N., Bonadona, V., Lasset, C., Révillion, F., Vennin, P., Muller, D., Gomes, D. M., Ingster, O., Coupier, I., Pujol, P., Collonge-Rame, M. A., Mortemousque, I., Bera, O., Rose, M., Baurand, A., Bertolone, G., Faivre, L., Dreyfus, H., Leroux, D., Venat-Bouvet, L., Bézieau, S., Delnatte, C., Chiesa, J., Gilbert-Dussardier, B., Gesta, P., Prieur, F. P., Bronner, M., Sokolowska, J., Coulet, F., Boutry-Kryza, N., Calender, A., Giraud, S., Leone, M., Fert-Ferrer, S., Stoppa-Lyonnet, D., Jiao, Y., Lesueur, F. L., Mebirouk, N., Barouk-Simonet, E., Bubien, V., Longy, M., Sevenet, N., Gladieff, L., Toulas, C., Reimineras, A., Sobol, H., Paillerets, B. B. D., Cabaret, O., Caron, O., Guillaud-Bataille, M., Rouleau, E., Belotti, M., Buecher, B., Caputo, S., Colas, C., Pauw, A. D., Fourme, E., Gauthier-Villars, M., Golmard, L., Moncoutier, V., Saule, C., Donaldson, A., Murray, A., Brady, A., Brewer, C., Pottinger, C., Miller, C., Gallagher, D., Gregory, H., Cook, J., Eason, J., Adlard, J., Barwell, J., Ong, K. R., Snape, K., Walker, L., Izatt, L., Side, L., Tischkowitz, M., Rogers, M. T., Porteous, M. E., Ahmed, M., Morrison, P. J., Brennan, P., Eeles, R., Davidson, R., Collée, J. M., Cornelissen, S., Couch, F. J., Cox, A., Cross, S. S., Cybulski, C., Czene, K., Daly, M. B., de la Hoya, M., Devilee, P., Diez, O., Ding, Y. C., Dite, G. S., Domchek, S. M., Dörk, T., dos-Santos-Silva, I., Droit, A., Dubois, S., Dumont, M., Duran, M., Durcan, L., Dwek, M., Eccles, D. M., Engel, C., Eriksson, M., Evans, D. G., Fasching, P. A., Fletcher, O., Floris, G., Flyger, H., Foretova, L., Foulkes, W. D., Friedman, E., Fritschi, L., Frost, D., Gabrielson, M., Gago-Dominguez, M., Gambino, G., Ganz, P. A., Gapstur, S. M., Garber, J., García-Sáenz, J. A., Gaudet, M. M., Georgoulias, V., Glendon, G., Godwin, A. K., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Tibiletti, M. G., Greene, M. H., Grip, M., Gronwald, J., Grundy, A., Guénel, P., Hahnen, E., Haiman, C. A., Håkansson, N., Hall, P., Hamann, U., Harrington, P. A., Hartikainen, J. M., Hartman, M., He, W., Healey, C. S., Heemskerk-Gerritsen, B. A. M., Heyworth, J., Hillemanns, P., Hogervorst, F. B. L., Hollestelle, A., Hooning, M. J., Hopper, J. L., Howell, A., Huang, G., Hulick, P. J., Imyanitov, E. N., Sexton, A., Christian, A., Trainer, A., Spigelman, A., Fellows, A., Shelling, A., Fazio, A. D., Blackburn, A., Crook, A., Giles, G., Schmidt, D. F., Southey, M. C., Milne, R. L., ABCTB Investigators, GEMO Study Collaborators, EMBRACE Collaborators, kConFab Investigators & HEBON Investigators, 1 Jan 2020, In : Nature Genetics. 52, 1, p. 56-73 18 p.

    Research output: Contribution to journalArticleResearchpeer-review

    18 Citations (Scopus)
  • Going beyond conventional mammographic density to discover novel mammogram-based predictors of breast cancer risk

    Hopper, J., Nguyen, T. L., Schmidt, D. F., Makalic, E., Song, Y-M., Sung, J., Dite, G. S., Dowty, J. G. & Li, S., 26 Feb 2020, In : Journal of Clinical Medicine. 9, 3, 13 p., 627.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
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  • InceptionTime: finding AlexNet for time series classification

    Ismail Fawaz, H., Lucas, B., Forestier, G., Pelletier, C., Schmidt, D. F., Weber, J., Webb, G. I., Idoumghar, L., Muller, P. A. & Petitjean, F., 7 Sep 2020, In : Data Mining and Knowledge Discovery. 34, p. 1936–1962 27 p.

    Research output: Contribution to journalArticleResearchpeer-review

    8 Citations (Scopus)
  • Smoking and blood DNA methylation: an epigenome-wide association study and assessment of reversibility

    Dugué, P-A., Jung, C-H., Joo, J. E., Wang, X., Wong, E. M., Makalic, E., Schmidt, D. F., Baglietto, L., Severi, G., Southey, M. C., English, D. R., Giles, G. G. & Milne, R. L., 2 Apr 2020, In : Epigenetics. 15, 4, p. 358-368 11 p.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
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    4 Citations (Scopus)
  • Transcriptome-wide association study of breast cancer risk by estrogen-receptor status

    Feng, H., Gusev, A., Pasaniuc, B., Wu, L., Long, J., Abu-full, Z., Aittomäki, K., Andrulis, I. L., Anton-Culver, H., Antoniou, A. C., Arason, A., Arndt, V., Aronson, K. J., Arun, B. K., Asseryanis, E., Auer, P. L., Azzollini, J., Balmaña, J., Barkardottir, R. B., Barnes, D. R. & 237 others, Barrowdale, D., Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Białkowska, K., Blanco, A., Blomqvist, C., Boeckx, B., Bogdanova, N. V., Bojesen, S. E., Bolla, M. K., Bonanni, B., Borg, A., Brauch, H., Brenner, H., Briceno, I., Broeks, A., Brüning, T., Burwinkel, B., Cai, Q., Caldés, T., Caligo, M. A., Campbell, I., Canisius, S., Campa, D., Carter, B. D., Carter, J., Castelao, J. E., Chang-Claude, J., Chanock, S. J., Christiansen, H., Chung, W. K., Claes, K. B. M., Clarke, C. L., Couch, F. J., Cox, A., Cross, S. S., Cybulski, C., Czene, K., Daly, M. B., de la Hoya, M., De Leeneer, K., Dennis, J., Devilee, P., Diez, O., Domchek, S. M., Dörk, T., dos-Santos-Silva, I., Dunning, A. M., Dwek, M., Eccles, D. M., Ejlertsen, B., Ellberg, C., Engel, C., Eriksson, M., Fasching, P. A., Fletcher, O., Flyger, H., Fostira, F., Friedman, E., Fritschi, L., Frost, D., Gabrielson, M., Ganz, P. A., Gapstur, S. M., Garber, J., García-Closas, M., García-Sáenz, J. A., Gaudet, M. M., Giles, G. G., Glendon, G., Godwin, A. K., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Greene, M. H., Gronwald, J., Guénel, P., Haiman, C. A., Hall, P., Hamann, U., Hake, C., He, W., Heyworth, J., Hogervorst, F. B. L., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Huang, G., Hulick, P. J., Humphreys, K., Imyanitov, E. N., Isaacs, C., Jakimovska, M., Jakubowska, A., James, P., Janavicius, R., Jankowitz, R. C., John, E. M., Johnson, N., Joseph, V., Jung, A., Karlan, B. Y., Khusnutdinova, E., Kiiski, J. I., Konstantopoulou, I., Kristensen, V. N., Laitman, Y., Lambrechts, D., Lazaro, C., Leroux, D., Leslie, G., Lester, J., Lesueur, F., Lindor, N., Lindström, S., Lo, W. Y., Loud, J. T., Lubiński, J., Makalic, E., Mannermaa, A., Manoochehri, M., Manoukian, S., Margolin, S., Martens, J. W. M., Martinez, M. E., Matricardi, L., Maurer, T., Mavroudis, D., McGuffog, L., Meindl, A., Menon, U., Michailidou, K., Kapoor, P. M., Miller, A., Montagna, M., Moreno, F., Moserle, L., Mulligan, A. M., Muranen, T. A., Nathanson, K. L., Neuhausen, S. L., Nevanlinna, H., Nevelsteen, I., Nielsen, F. C., Nikitina-Zake, L., Offit, K., Olah, E., Olopade, O. I., Olsson, H., Osorio, A., Papp, J., Park-Simon, T. W., Parsons, M. T., Pedersen, I. S., Peixoto, A., Peterlongo, P., Peto, J., Pharoah, P. D. P., Phillips, K. A., Plaseska-Karanfilska, D., Poppe, B., Pradhan, N., Prajzendanc, K., Presneau, N., Punie, K., Pylkäs, K., Radice, P., Rantala, J., Rashid, M. U., Rennert, G., Risch, H. A., Robson, M., Romero, A., Saloustros, E., Sandler, D. P., Santos, C., Sawyer, E. J., Schmidt, M. K., Schmidt, D. F., Schmutzler, R. K., Schoemaker, M. J., Scott, R. J., Sharma, P., Shu, X. O., Simard, J., Singer, C. F., Skytte, A. B., Soucy, P., Southey, M. C., Spinelli, J. J., Spurdle, A. B., Stone, J., Swerdlow, A. J., Tapper, W. J., Taylor, J. A., Teixeira, M. R., Terry, M. B., Teulé, A., Thomassen, M., Thöne, K., Thull, D. L., Tischkowitz, M., Toland, A. E., Tollenaar, R. A. E. M., Torres, D., Truong, T., Tung, N., Vachon, C. M., van Asperen, C. J., van den Ouweland, A. M. W., van Rensburg, E. J., Vega, A., Viel, A., Vieiro-Balo, P., Wang, Q., Wappenschmidt, B., Weinberg, C. R., Weitzel, J. N., Wendt, C., Winqvist, R., Yang, X. R., Yannoukakos, D., Ziogas, A., Milne, R. L., Easton, D. F., Chenevix-Trench, G., Zheng, W., ABCTB Investigators, HEBON Investigators, BCFR Investigators, OCGN Investigators, GEMO Study Collaborators, EMBRACE Collaborators & GC-HBOC Study Collaborators, Jul 2020, In : Genetic Epidemiology. 44, 5, p. 442-468 27 p.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
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    3 Citations (Scopus)
  • 2019

    Ability of known susceptibility SNPs to predict colorectal cancer risk for persons with and without a family history

    Jenkins, M. A., Win, A. K., Dowty, J. G., MacInnis, R. J., Makalic, E., Schmidt, D. F., Dite, G. S., Kapuscinski, M., Clendenning, M., Rosty, C., Winship, I. M., Emery, J. D., Saya, S., Macrae, F. A., Ahnen, D. J., Duggan, D., Figueiredo, J. C., Lindor, N. M., Haile, R. W., Potter, J. D. & 6 others, Cotterchio, M., Gallinger, S., Newcomb, P. A., Buchanan, D. D., Casey, G. & Hopper, J. L., Oct 2019, In : Familial Cancer. 18, 4, p. 389-397 9 p.

    Research output: Contribution to journalArticleResearchpeer-review

    6 Citations (Scopus)
  • Genome-wide association study of germline variants and breast cancer-specific mortality

    Escala-Garcia, M., Guo, Q., Dörk, T., Canisius, S., Keeman, R., Dennis, J., Beesley, J., Lecarpentier, J., Bolla, M. K., Wang, Q., Abraham, J., Andrulis, I. L., Anton-Culver, H., Arndt, V., Auer, P. L., Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Bernstein, L. & 217 others, Blomqvist, C., Boeckx, B., Bojesen, S. E., Bonanni, B., Børresen-Dale, A. L., Brauch, H., Brenner, H., Brentnall, A., Brinton, L., Broberg, P., Brock, I. W., Brucker, S. Y., Burwinkel, B., Caldas, C., Caldés, T., Campa, D., Canzian, F., Carracedo, A., Carter, B. D., Castelao, J. E., Chang-Claude, J., Chanock, S. J., Chenevix-Trench, G., Cheng, T. Y. D., Chin, S. F., Clarke, C. L., NBCS Collaborators, Cordina-Duverger, E., Couch, F. J., Cox, D. G., Cox, A., Cross, S. S., Czene, K., Daly, M. B., Devilee, P., Dunn, J. A., Dunning, A. M., Durcan, L., Dwek, M., Earl, H. M., Ekici, A. B., Eliassen, A. H., Ellberg, C., Engel, C., Eriksson, M., Evans, D. G., Figueroa, J., Flesch-Janys, D., Flyger, H., Gabrielson, M., Gago-Dominguez, M., Galle, E., Gapstur, S. M., García-Closas, M., García-Sáenz, J. A., Gaudet, M. M., George, A., Georgoulias, V., Giles, G. G., Glendon, G., Goldgar, D. E., González-Neira, A., Alnæs, G. I. G., Grip, M., Guénel, P., Haeberle, L., Hahnen, E., Haiman, C. A., Håkansson, N., Hall, P., Hamann, U., Hankinson, S., Harkness, E. F., Harrington, P. A., Hart, S. N., Hartikainen, J. M., Hein, A., Hillemanns, P., Hiller, L., Holleczek, B., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Howell, A., Huang, G., Humphreys, K., Hunter, D. J., Janni, W., John, E. M., Jones, M. E., Jukkola-Vuorinen, A., Jung, A., Kaaks, R., Kabisch, M., Kaczmarek, K., Kerin, M. J., Khan, S., Khusnutdinova, E., Kiiski, J. I., Kitahara, C. M., Knight, J. A., Ko, Y. D., Koppert, L. B., Kosma, V. M., Kraft, P., Kristensen, V. N., Krüger, U., Kühl, T., Lambrechts, D., Le Marchand, L., Lee, E., Lejbkowicz, F., Li, L., Lindblom, A., Lindström, S., Linet, M., Lissowska, J., Lo, W. Y., Loibl, S., Lubiński, J., Lux, M. P., MacInnis, R. J., Maierthaler, M., Maishman, T., Makalic, E., Mannermaa, A., Manoochehri, M., Manoukian, S., Margolin, S., Martinez, M. E., Mavroudis, D., McLean, C., Meindl, A., Middha, P., Miller, N., Milne, R. L., Moreno, F., Mulligan, A. M., Mulot, C., Nassir, R., Neuhausen, S. L., Newman, W. T., Nielsen, S. F., Nordestgaard, B. G., Norman, A., Olsson, H., Orr, N., Pankratz, V. S., Park-Simon, T. W., Perez, J. I. A., Pérez-Barrios, C., Peterlongo, P., Petridis, C., Pinchev, M., Prajzendanc, K., Prentice, R., Presneau, N., Prokofieva, D., Pylkäs, K., Rack, B., Radice, P., Ramachandran, D., Rennert, G., Rennert, H. S., Rhenius, V., Romero, A., Roylance, R., Saloustros, E., Sawyer, E. J., Schmidt, D. F., Schmutzler, R. K., Schneeweiss, A., Schoemaker, M. J., Schumacher, F., Schwentner, L., Scott, R. J., Scott, C., Seynaeve, C., Shah, M., Simard, J., Smeets, A., Sohn, C., Southey, M. C., Swerdlow, A. J., Talhouk, A., Tamimi, R. M., Tapper, W. J., Teixeira, M. R., Tengström, M., Terry, M. B., Thöne, K., Tollenaar, R. A. E. M., Tomlinson, I., Torres, D., Truong, T., Turman, C., Turnbull, C., Ulmer, H. U., Untch, M., Vachon, C., van Asperen, C. J., van den Ouweland, A. M. W., van Veen, E. M., Wendt, C., Whittemore, A. S., Willett, W., Winqvist, R., Wolk, A., Yang, X. R., Zhang, Y., Easton, D. F., Fasching, P. A., Nevanlinna, H., Eccles, D. M., Pharoah, P. D. P. & Schmidt, M. K., 21 Feb 2019, In : British Journal of Cancer. 120, p. 647-657 11 p.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
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    12 Citations (Scopus)
  • Polygenic Risk Scores for Prediction of Breast Cancer and Breast Cancer Subtypes

    Mavaddat, N., Michailidou, K., Dennis, J., Lush, M., Fachal, L., Lee, A., Tyrer, J. P., Chen, T. H., Wang, Q., Bolla, M. K., Yang, X., Adank, M. A., Ahearn, T., Aittomäki, K., Allen, J., Andrulis, I. L., Anton-Culver, H., Antonenkova, N. N., Arndt, V., Aronson, K. J. & 233 others, Auer, P. L., Auvinen, P., Barrdahl, M., Beane Freeman, L. E., Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Bernstein, L., Blomqvist, C., Bogdanova, N. V., Bojesen, S. E., Bonanni, B., Børresen-Dale, A. L., Brauch, H., Bremer, M., Brenner, H., Brentnall, A., Brock, I. W., NBCS Collaborators, ABCTB Investigators, kConFab/AOCS Investigators, Brooks-Wilson, A., Brucker, S. Y., Brüning, T., Burwinkel, B., Campa, D., Carter, B. D., Castelao, J. E., Chanock, S. J., Chlebowski, R., Christiansen, H., Clarke, C. L., Collée, J. M., Cordina-Duverger, E., Cornelissen, S., Couch, F. J., Cox, A., Cross, S. S., Czene, K., Daly, M. B., Devilee, P., Dörk, T., dos-Santos-Silva, I., Dumont, M., Durcan, L., Dwek, M., Eccles, D. M., Ekici, A. B., Eliassen, A. H., Ellberg, C., Engel, C., Eriksson, M., Evans, D. G., Fasching, P. A., Figueroa, J., Fletcher, O., Flyger, H., Försti, A., Fritschi, L., Gabrielson, M., Gago-Dominguez, M., Gapstur, S. M., García-Sáenz, J. A., Gaudet, M. M., Georgoulias, V., Giles, G. G., Gilyazova, I. R., Glendon, G., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Grenaker Alnæs, G. I., Grip, M., Gronwald, J., Grundy, A., Guénel, P., Haeberle, L., Hahnen, E., Haiman, C. A., Håkansson, N., Hamann, U., Hankinson, S. E., Harkness, E. F., Hart, S. N., He, W., Hein, A., Heyworth, J., Hillemanns, P., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Howell, A., Huang, G., Humphreys, K., Hunter, D. J., Jakimovska, M., Jakubowska, A., Janni, W., John, E. M., Johnson, N., Jones, M. E., Jukkola-Vuorinen, A., Jung, A., Kaaks, R., Kaczmarek, K., Kataja, V., Keeman, R., Kerin, M. J., Khusnutdinova, E., Kiiski, J. I., Knight, J. A., Ko, Y. D., Kosma, V. M., Koutros, S., Kristensen, V. N., Krüger, U., Kühl, T., Lambrechts, D., Le Marchand, L., Lee, E., Lejbkowicz, F., Lilyquist, J., Lindblom, A., Lindström, S., Lissowska, J., Lo, W. Y., Loibl, S., Long, J., Lubiński, J., Lux, M. P., MacInnis, R. J., Maishman, T., Makalic, E., Maleva Kostovska, I., Mannermaa, A., Manoukian, S., Margolin, S., Martens, J. W. M., Martinez, M. E., Mavroudis, D., McLean, C., Meindl, A., Menon, U., Middha, P., Miller, N., Moreno, F., Mulligan, A. M., Mulot, C., Muñoz-Garzon, V. M., Neuhausen, S. L., Nevanlinna, H., Neven, P., Newman, W. G., Nielsen, S. F., Nordestgaard, B. G., Norman, A., Offit, K., Olson, J. E., Olsson, H., Orr, N., Pankratz, V. S., Park-Simon, T. W., Perez, J. I. A., Pérez-Barrios, C., Peterlongo, P., Peto, J., Pinchev, M., Plaseska-Karanfilska, D., Polley, E. C., Prentice, R., Presneau, N., Prokofyeva, D., Purrington, K., Pylkäs, K., Rack, B., Radice, P., Rau-Murthy, R., Rennert, G., Rennert, H. S., Rhenius, V., Robson, M., Romero, A., Ruddy, K. J., Ruebner, M., Saloustros, E., Sandler, D. P., Sawyer, E. J., Schmidt, D. F., Schmutzler, R. K., Schneeweiss, A., Schoemaker, M. J., Schumacher, F., Schürmann, P., Schwentner, L., Scott, C., Scott, R. J., Seynaeve, C., Shah, M., Sherman, M. E., Shrubsole, M. J., Shu, X. O., Slager, S., Smeets, A., Sohn, C., Soucy, P., Southey, M. C., Spinelli, J. J., Stegmaier, C., Stone, J., Swerdlow, A. J., Tamimi, R. M., Tapper, W. J., Taylor, J. A., Terry, M. B., Thöne, K., Tollenaar, R. A. E. M., Tomlinson, I., Truong, T., Tzardi, M., Ulmer, H. U., Untch, M., Vachon, C. M., van Veen, E. M., Vijai, J., Weinberg, C. R., Wendt, C., Whittemore, A. S., Wildiers, H., Willett, W., Winqvist, R. & Milne, R. L., 3 Jan 2019, In : American Journal of Human Genetics. 104, 1, p. 21-34 14 p.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
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    177 Citations (Scopus)
  • 2018

    Association of dna methylation-based biological age with health risk factors and overall and cause-specific mortality

    Dugué, P. A., Bassett, J. K., Joo, J. E., Baglietto, L., Jung, C. H., Wong, E. M., Fiorito, G., Schmidt, D., Makalic, E., Li, S., Moreno-Betancur, M., Buchanan, D. D., Vineis, P., English, D. R., Hopper, J. L., Severi, G., Southey, M. C., Giles, G. G. & Milne, R. L., 1 Mar 2018, In : American Journal of Epidemiology. 187, 3, p. 529-538 10 p.

    Research output: Contribution to journalArticleResearchpeer-review

    31 Citations (Scopus)
  • Dietary intake of one-carbon metabolism nutrients and DNA methylation in peripheral blood

    Chamberlain, J. A., Dugué, P. A., Bassett, J. K., Hodge, A. M., Brinkman, M. T., Joo, J. H. E., Jung, C. H., Makalic, E., Schmidt, D. F., Hopper, J. L., Buchanan, D. D., English, D. R., Southey, M. C., Giles, G. G. & Milne, R. L., 1 Sep 2018, In : American Journal of Clinical Nutrition. 108, 3, p. 611-621 11 p.

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    16 Citations (Scopus)
  • DNA methylation-based biological aging and cancer risk and survival: pooled analysis of seven prospective studies

    Dugué, P. A., Bassett, J. K., Joo, J. E., Jung, C. H., Ming Wong, E., Moreno-Betancur, M., Schmidt, D., Makalic, E., Li, S., Severi, G., Hodge, A. M., Buchanan, D. D., English, D. R., Hopper, J. L., Southey, M. C., Giles, G. G. & Milne, R. L., 15 Apr 2018, In : International Journal of Cancer. 142, 8, p. 1611-1619 9 p.

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    42 Citations (Scopus)
  • Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies

    Pande, M., Joon, A., Brewster, A. M., Chen, W. V., Hopper, J. L., Eng, C., Shete, S., Casey, G., Schumacher, F., Lin, Y., Harrison, T. A., White, E., Ahsan, H., Andrulis, I. L., Whittemore, A. S., John, E. M., Win, A. K., Makalic, E., Schmidt, D. F., Kapuscinski, M. K. & 8 others, Ochs-Balcom, H. M., Gallinger, S., Jenkins, M. A., Newcomb, P. A., Lindor, N. M., Peters, U., Amos, C. I. & Lynch, P. M., 26 Apr 2018, In : PLoS ONE. 13, 4, 10 p., e0196245.

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  • Heritable methylation marks associated with breast and prostate cancer risk

    Dugué, P. A., Dowty, J. G., Joo, J. E., Wong, E. M., Makalic, E., Schmidt, D. F., English, D. R., Hopper, J. L., Pedersen, J., Severi, G., MacInnis, R. J., Milne, R. L., Giles, G. G. & Southey, M. C., 15 Sep 2018, In : The Prostate. 78, 13, p. 962-969 8 p.

    Research output: Contribution to journalArticleResearchpeer-review

    4 Citations (Scopus)
  • Minimum message length inference of the Poisson and geometric models using heavy-tailed prior distributions

    Wong, C. K., Makalic, E. & Schmidt, D. F., Apr 2018, In : Journal of Mathematical Psychology. 83, p. 1-11 11 p.

    Research output: Contribution to journalArticleResearchpeer-review

  • Novel associations between blood DNA methylation and body mass index in middle-Aged and older adults

    Geurts, Y. M., Dugué, P. A., Joo, J. E., Makalic, E., Jung, C. H., Guan, W., Nguyen, S., Grove, M. L., Wong, E. M., Hodge, A. M., Bassett, J. K., FitzGerald, L. M., Tsimiklis, H., Baglietto, L., Severi, G., Schmidt, D. F., Buchanan, D. D., MacInnis, R. J., Hopper, J. L., Pankow, J. S. & 5 others, Demerath, E. W., Southey, M. C., Giles, G. G., English, D. R. & Milne, R. L., 1 Apr 2018, In : International Journal of Obesity. 42, 4, p. 887-896 10 p.

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    21 Citations (Scopus)
  • 2017

    Association analysis identifies 65 new breast cancer risk loci

    Michailidou, K., Lindström, S., Dennis, J., Beesley, J., Hui, S., Kar, S., Lemaçon, A., Soucy, P., Glubb, D., Rostamianfar, A., Bolla, M. K., Wang, Q., Tyrer, J., Dicks, E., Lee, A., Wang, Z., Allen, J., Keeman, R., Eilber, U., French, J. D. & 233 others, Chen, X. Q., Fachal, L., McCue, K., Reed, A. E. M. C., Ghoussaini, M., Carroll, J. S., Jiang, X., Finucane, H., Adams, M., Adank, M. A., Ahsan, H., Aittomäki, K., Anton-Culver, H., Antonenkova, N. N., Arndt, V., Aronson, K. J., Arun, B., Auer, P. L., Bacot, F., Barrdahl, M., Baynes, C., Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Bernstein, L., Blomqvist, C., Bogdanova, N. V., Bojesen, S. E., Bonanni, B., Børresen-Dale, A. L., Brand, J. S., Brauch, H., Brennan, P., Brenner, H., Brinton, L., Broberg, P., Brock, I. W., Broeks, A., Brooks-Wilson, A., Brucker, S. Y., Brüning, T., Burwinkel, B., Butterbach, K., Cai, Q., Cai, H., Caldés, T., Canzian, F., Carracedo, A., Carter, B. D., Castelao, J. E., Chan, T. L., Cheng, T. Y. D., Chia, K. S., Choi, J. Y., Christiansen, H., Clarke, C. L., NBCS Collaborators, Collée, M., Conroy, D. M., Cordina-Duverger, E., Cornelissen, S., Cox, D. G., Cox, A., Cross, S. S., Cunningham, J. M., Czene, K., Daly, M. B., Devilee, P., Doheny, K. F., Dörk, T., Dos-Santos-Silva, I., Dumont, M., Durcan, L., Dwek, M., Eccles, D. M., Ekici, A. B., Eliassen, A. H., Ellberg, C., Elvira, M., Engel, C., Eriksson, M., Fasching, P. A., Figueroa, J., Flesch-Janys, D., Fletcher, O., Flyger, H., Fritschi, L., Gaborieau, V., Gabrielson, M., Gago-Dominguez, M., Gao, Y. T., Gapstur, S. M., García-Sáenz, J. A., Gaudet, M. M., Georgoulias, V., Giles, G. G., Glendon, G., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Alnæs, G. I. G., Grip, M., Gronwald, J., Grundy, A., Guénel, P., Haeberle, L., Hahnen, E., Haiman, C. A., Håkansson, N., Hamann, U., Hamel, N., Hankinson, S., Harrington, P., Hart, S. N., Hartikainen, J. M., Hartman, M., Hein, A., Heyworth, J., Hicks, B., Hillemanns, P., Ho, D. N., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Hou, M. F., Hsiung, C. N., Huang, G., Humphreys, K., Ishiguro, J., Ito, H., Iwasaki, M., Iwata, H., Jakubowska, A., Janni, W., John, E. M., Johnson, N., Jones, K., Jones, M., Jukkola-Vuorinen, A., Kaaks, R., Kabisch, M., Kaczmarek, K., Kang, D., Kasuga, Y., Kerin, M. J., Khan, S., Khusnutdinova, E., Kiiski, J. I., Kim, S. W., Knight, J. A., Kosma, V. M., Kristensen, V. N., Krüger, U., Kwong, A., Lambrechts, D., Le Marchand, L., Lee, E., Lee, M. H., Lee, J. W., Lee, C. N., Lejbkowicz, F., Li, J., Lilyquist, J., Lindblom, A., Lissowska, J., Lo, W. Y., Loibl, S., Long, J., Lophatananon, A., Lubinski, J., Luccarini, C., Lux, M. P., Ma, E. S. K., MacInnis, R. J., Maishman, T., Makalic, E., Malone, K. E., Kostovska, I. M., Mannermaa, A., Manoukian, S., Manson, J. A. E., Margolin, S., Mariapun, S., Martinez, M. E., Matsuo, K., Mavroudis, D., McKay, J., McLean, C., Meijers-Heijboer, H., Meindl, A., Menéndez, P., Menon, U., Meyer, J., Miao, H., Miller, N., Taib, N. A. M., Muir, K., Mulligan, A. M., Mulot, C., Neuhausen, S. L., Nevanlinna, H., Neven, P., Nielsen, S. F., Noh, D. Y., Nordestgaard, B. G., Norman, A., Olopade, O. I., Olson, J. E., Olsson, H., Olswold, C., Orr, N., Pankratz, V. S., Park, S. K., Park-Simon, T. W., Lloyd, R., Perez, J. I. A., Peterlongo, P., Peto, J., Phillips, K. A., Pinchev, M., Plaseska-Karanfilska, D., Prentice, R., Presneau, N., Prokofyeva, D., Pugh, E., Pylkäs, K., ABCTB Investigators, kConFab/AOCS Investigators, Schmidt, D. F., Southey, M. C. & Milne, R. L., 2 Nov 2017, In : Nature. 551, 7678, p. 92-94 3 p.

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    397 Citations (Scopus)
  • Genome-Wide Measures of Peripheral Blood Dna Methylation and Prostate Cancer Risk in a Prospective Nested Case-Control Study

    Fitzgerald, L. M., Naeem, H., Makalic, E., Schmidt, D. F., Dowty, J. G., Joo, J. E., Jung, C-H., Bassett, J. K., Dugue, P. A., Chung, J., Lonie, A., Milne, R. L., Wong, E. M., Hopper, J. L., English, D. R., Severi, G., Baglietto, L., Pedersen, J., Giles, G. G. & Southey, M. C., 1 Apr 2017, In : The Prostate. 77, 5, p. 471-478 8 p.

    Research output: Contribution to journalArticleResearchpeer-review

    19 Citations (Scopus)
  • Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer

    Milne, R. L., Kuchenbaecker, K. B., Michailidou, K., Beesley, J., Kar, S., Lindström, S., Hui, S., Lemaçon, A., Soucy, P., Dennis, J., Jiang, X., Rostamianfar, A., Finucane, H., Bolla, M. K., McGuffog, L., Wang, Q., Aalfs, C. M., Adams, M., Adlard, J., Agata, S. & 230 others, Ahmed, S., Ahsan, H., Aittom, K. Ä., Fares, A. E., Allen, J., Ambrosone, C. B., Amos, C. I., Andrulis, I. L., Anton-Culver, H., Antonenkova, N. N., Arndt, V., Arnold, N., Aronson, K. J., Auber, B., Auer, P. L., Ausems, M. G. M., Azzollini, J., François, B., Balma, J. N., Barile, M., Barjhoux, L., Barkardottir, R. B., Barrdahl, M., Barnes, D., Barrowdale, D., Baynes, C., Beckmann, M. W., Benitez, J., Bermisheva, M., Bernstein, L., Bignon, Y. J., Blazer, K. R., Blok, M. J., Blomqvist, C., Blot, W., Bobolis, K., Boeckx, B., Bogdanova, N. V., Bojesen, A., Bojesen, S. E., Bonanni, B., Anne-Lise, B. D., Bozsik, A., Bradbury, A. R., Brand, J. S., Brauch, H., Brenner, H., Brigitte, B. D. P., Brewer, C., Brinton, L., Broberg, P., Angela, B. W., Brunet, J., Brüning, T., Burwinkel, B., Buys, S. S., Byun, J., Cai, Q., Cald, T. É., Caligo, M. A., Campbell, I., Canzian, F., Caron, O., Carracedo, A., Carter, B. D., Esteban, C., Castera, L., Virginie, C. M., Chan, S. B., Jenny, C. C., Chanock, S. J., Chen, X., Cheng, T. Y. D., Chiquette, J., Christiansen, H., Claes, K. B., Clarke, C. L., Conner, T., Conroy, D. M., Cook, J., Cordina-Duverger, E., Cornelissen, S., Coupier, I., Cox, A., Cox, D. G., Cross, S. S., Cuk, K., Cunningham, J. M., Czene, K., Daly, M. B., Damiola, F., Darabi, H., Davidson, R., Leeneer, K. D. L., Devilee, P., Dicks, E., Diez, O., Ding, Y. C., Ditsch, N., Doheny, K. F., Domchek, S. M., Dorfling, C. M., Dörk, T., Dos-Santos-Silva, I., Dubois, S., Dugué, P. A., Dumont, M., Dunning, A. M., Durcan, L., Dwek, M., Dworniczak, B., Eccles, D., Eeles, R., Ehrencrona, H., Eilber, U., Ejlertsen, B., Ekici, A. B., Eliassen, A. H., Engel, C., Eriksson, M., Fachal, L., Faivre, L., Fasching, P. A., Faust, U., Figueroa, J., Flesch-Janys, D., Fletcher, O., Flyger, H., Foulkes, W. D., Friedman, E., Fritschi, L., Frost, D., Gabrielson, M., Gaddam, P., Gammon, M. D., Ganz, P. A., Gapstur, S. M., Garber, J., Garcia-Barberan, V., Garciá-Saénz, J. A., Gaudet, M. M., Gauthier-Villars, M., Gehrig, A., Georgoulias, V., Gerdes, A. M., Giles, G. G., Glendon, G., Godwin, A. K., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Goodfellow, P., Greene, M. H., Grenaker, G. A. I., Grip, M., Gronwald, J., Grundy, A., Gschwantler, D. K., Guénel, P., Guo, Q., Haeberle, L., Hahnen, E., Haiman, C. A., Håkansson, N., Hallberg, E., Hamann, U., Hamel, N., Hankinson, S., Hansen, T. V., Harrington, P., Hart, S. N., Hartikainen, J. M., Healey, C. S., Hein, A., Helbig, S., Henderson, A., Heyworth, J., Hicks, B., Hillemanns, P., Hodgson, S., Hogervorst, F. B., Hollestelle, A., Hooning, M. J., Hoover, B., Hopper, J. L., Hu, C., Huang, G., Hulick, P. J., Humphreys, K., Hunter, D. J., Imyanitov, E. N., Isaacs, C., Iwasaki, M., Izatt, L., Jakubowska, A., James, P., Janavicius, R., Janni, W., Jensen, U. B., John, E. M., Johnson, N., Jones, K., Jones, M., Jukkola-Vuorinen, A., Kaaks, R., Kabisch, M., Kaczmarek, K., Kang, D., Kast, K., Keeman, R., Kerin, M. J., Kets, C. M., Keupers, M. H., Khan, S., Khusnutdinova, E., Kiiski, J. I., Kim, S. W., Knight, J. A., Konstantopoulou, I., Kosma, V. M., Kristensen, V. N., Kruse, T. A., Kwong, A., Lænkholm, A. V., Laitman, Y., Lalloo, F., Lambrechts, D., Schmidt, D. F., Southey, M. C. & ABCTB Investigators, 1 Dec 2017, In : Nature Genetics. 49, 12, p. 1767-1778 12 p.

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    109 Citations (Scopus)
  • 2016

    A simple sampler for the horseshoe estimator

    Makalic, E. & Schmidt, D. F., Jan 2016, In : IEEE Signal Processing Letters. 23, 1, p. 179-182 4 p., 23882.

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    34 Citations (Scopus)
  • Childhood body mass index and adult mammographic density measures that predict breast cancer risk

    Hopper, J. L., Nguyen, T. L., Stone, J., Aujard, K., Matheson, M. C., Abramson, M. J., Burgess, J. A., Walters, E. H., Dite, G. S., Bui, M., Evans, C., Makalic, E., Schmidt, D. F., Ward, G., Jenkins, M. A., Giles, G. G., Dharmage, S. C. & Apicella, C., 1 Feb 2016, In : Breast Cancer Research and Treatment. 156, 1, p. 163-170 8 p.

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    11 Citations (Scopus)
  • Cross-cancer genome-wide analysis of lung, ovary, breast, prostate, and colorectal cancer reveals novel pleiotropic associations

    Fehringer, G., Kraft, P., Pharoah, P. D., on behalf of Ovarian Cancer Association Consortium (OCAC), Eeles, R. A., on behalf of the PRACTICAL consortium, Chatterjee, N., Schumacher, F. R., Schildkraut, J. M., Lindström, S., Brennan, P., Bickeböller, H., Houlston, R. S., Landi, M. T., Caporaso, N., Risch, A., Al Olama, A. A., Berndt, S. I., Giovannucci, E. L., Grönberg, H. & 118 others, Kote-Jarai, Z., Ma, J., Muir, K., Stampfer, M. J., Stevens, V. L., Wiklund, F., Willett, W. C., Goode, E. L., Permuth, J. B., Risch, H. A., Reid, B. M., Bezieau, S., Brenner, H., Chan, A. T., Chang-Claude, J., Hudson, T. J., Kocarnik, J. K., Newcomb, P. A., Schoen, R. E., Slattery, M. L., White, E., Adank, M. A., on behalf of Hereditary Breast and Ovarian Cancer Research Group Netherlands (HEBON), Ahsan, H., Aittomäki, K., Baglietto, L., Blomquist, C., Canzian, F., Czene, K., Dos-Santos-silva, I., Eliassen, A. H., Figueroa, J. D., Flesch-Janys, D., Fletcher, O., Garcia-Closas, M., Gaudet, M. M., Johnson, N., Hall, P., Hazra, A., Hein, R., Hofman, A., Hopper, J. L., Irwanto, A., Johansson, M., Kaaks, R., Kibriya, M. G., Lichtner, P., Liu, J., Lund, E., Makalic, E., Meindl, A., Müller-Myhsok, B., Muranen, T. A., Nevanlinna, H., Peeters, P. H., Peto, J., Prentice, R. L., Rahman, N., Sanchez, M. J., Schmidt, D. F., Schmutzler, R. K., Southey, M. C., Tamimi, R., Travis, R. C., Turnbull, C., Uitterlinden, A. G., Wang, Z., Whittemore, A. S., Yang, X. R., Zheng, W., Buchanan, D. D., Casey, G., Conti, D. V., Edlund, C. K., Gallinger, S., Haile, R. W., Jenkins, M., Marchand, L., Li, L., Lindor, N. M., Schmit, S. L., Thibodeau, S. N., Woods, M. O., Rafnar, T., Gudmundsson, J., Stacey, S. N., Stefansson, K., Sulem, P., Chen, Y. A., Tyrer, J. P., Christiani, D. C., Wei, Y., Shen, H., Hu, Z., Shu, X. O., Shiraishi, K., Takahashi, A., Bossé, Y., Obeidat, M., Nickle, D., Timens, W., Freedman, M. L., Li, Q., Seminara, D., Chanock, S. J., Gong, J., Peters, U., Gruber, S. B., on behalf of Colorectal Transdisciplinary (CORECT) , Amos, C. I., Sellers, T. A., Easton, D. F., Hunter, D. J., Haiman, C. A., on behalf of African American Breast Cancer Consortium (AABC), African Ancestry Prostate Cancer Consortium (AAPC), Henderson, B. E. & Hung, R. J., 1 Sep 2016, In : Cancer Research. 76, 17, p. 5103-5114 12 p.

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    50 Citations (Scopus)
  • Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: A prospective nested case-control study

    Dugué, P. A., Brinkman, M. T., Milne, R. L., Wong, E. M., Fitzgerald, L. M., Bassett, J. K., Joo, J. E., Jung, C-H., Makalic, E., Schmidt, D. F., Park, D. J., Chung, J., Ta, A. D., Bolton, D. M., Lonie, A., Longano, A., Hopper, J. L., Severi, G., Saffery, R., English, D. R. & 2 others, Southey, M. C. & Giles, G. G., 6 Sep 2016, In : British Journal of Cancer. 115, 6, p. 664-673 10 p.

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    19 Citations (Scopus)
  • Global measures of peripheral blood-derived DNA methylation as a risk factor in the development of mature B-cell neoplasms

    Wong Doo, N., Makalic, E., Joo, J. E., Vajdic, C. M., Schmidt, D. F., Wong, E. M., Jung, C-H., Severi, G., Park, D. J., Chung, J., Baglietto, L., Prince, H. M., Seymour, J. F., Tam, C., Hopper, J. L., English, D. R., Milne, R. L., Harrison, S. J., Southey, M. C. & Giles, G. G., Jan 2016, In : Epigenomics. 8, 1, p. 55-66 12 p.

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    21 Citations (Scopus)
  • Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer

    Couch, F. J., Kuchenbaecker, K. B., Michailidou, K., Mendoza-Fandino, G. A., Nord, S., Lilyquist, J., Olswold, C., Hallberg, E., Agata, S., Ahsan, H., Aittomäki, K., Ambrosone, C. B., Andrulis, I. L., Anton-Culver, H., Arndt, V., Arun, B. K., Arver, B., Barile, M., Barkardottir, R. B., Barrowdale, D. & 229 others, Beckmann, L., Beckmann, M. W., Benitez, J., Blank, S. V., Blomqvist, C., Bogdanova, N. V., Bojesen, S. E., Bolla, M. K., Bonanni, B., Brauch, H., Brenner, H., Burwinkel, B., Buys, S. S., Caldes, T., Caligo, M. A., Canzian, F., Carpenter, J., Chang-Claude, J., Chanock, S. J., Chung, W. K., Claes, K. B. M., Cox, A., Cross, S. S., Cunningham, J. M., Czene, K., Daly, M. B., Damiola, F., Darabi, H., de la Hoya, M., Devilee, P., Diez, O., Ding, Y. C., Dolcetti, R., Domchek, S. M., Dorfling, C. M., dos-Santos-Silva, I., Dumont, M., Dunning, A. M., Eccles, D. M., Ehrencrona, H., Ekici, A. B., Eliassen, A. H., Ellis, S., Fasching, P. A., Figueroa, J. D., Flesch-Janys, D., Försti, A., Fostira, F., Foulkes, W. D., Friebel, T. M., Friedman, E., Frost, D., Gabrielson, M., Gammon, M. D., Ganz, P. A., Gapstur, S. M., Garber, J., Gaudet, M. M., Gayther, S. A., Gerdes, A-M., Ghoussaini, M., Giles, G. G., Glendon, G., Godwin, A. K., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Greene, M. H., Gronwald, J., Guénel, P., Gunter, M., Haeberle, L., Haiman, C. A., Hamann, U., Hansen, T. V. O., Hart, S. N., Healey, S., Heikkinen, T., Henderson, B. E., Herzog, J., Hogervorst, F. B. L., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Humphreys, K., Hunter, D. J., Huzarski, T., Imyanitov, E. N., Isaacs, C., Jakubowska, A., James, P., Janavicius, R., Jensen, U. B., John, E. M., Jones, M., Kabisch, M., Kar, S., Karlan, B. Y., Khan, S., Khaw, K-T., Kibriya, M. G., Knight, J. A., Ko, Y-D., Konstantopoulou, I., Kosma, V-M., Kristensen, V., Kwong, A., Laitman, Y., Lambrechts, D., Lazaro, C., Lee, E., Le Marchand, L., Lester, J., Lindblom, A., Lindor, N. M., Lindstrom, S., Liu, J., Long, J., Lubinski, J., Mai, P. L., Makalic, E., Malone, K. E., Mannermaa, A., Manoukian, S., Margolin, S., Marme, F., Martens, J. W. M., McGuffog, L., Meindl, A., Miller, A., Milne, R. L., Miron, P., Montagna, M., Mazoyer, S., Mulligan, A. M., Muranen, T. A., Nathanson, K. L., Neuhausen, S. L., Nevanlinna, H., Nordestgaard, B. G., Nussbaum, R. L., Offit, K., Olah, E., Olopade, O. I., Olson, J. E., Osorio, A., Park, S. K., Peeters, P. H., Peissel, B., Peterlongo, P., Peto, J., Phelan, C. M., Pilarski, R., Poppe, B., Pylkäs, K., Radice, P., Rahman, N., Rantala, J., Rappaport-Fuerhauser, C., Rennert, G., Richardson, A. J., Robson, M. E., Romieu, I., Rudolph, A., Rutgers, E. J., Sanchez, M-J., Santella, R. M., Sawyer, E. J., Schmidt, D. F., Schmidt, M. K., Schmutzler, R. K., Schumacher, F., Scott, R., Senter, L., Sharma, P., Simard, J., Singer, C. F., Sinilnikova, O. M., Soucy, P., Southey, M., Steinemann, D., Stenmark-Askmalm, M., Stoppa-Lyonnet, D., Swerdlow, A. J., Szabo, C. I., Tamimi, R., Tapper, W. J., Teixeira, M. R., Teo, S-H., Terry, M. B., Thomassen, M., Thompson, D. J., Tihomirova, L., Toland, A. E., Tollenaar, R. A. E. M., Tomlinson, I. P., Truong, T., Tsimiklis, H., Teulé, A., Tumino, R., Tung, N., Turnbull, C., Ursin, G., van Deurzen, C. H. M., van Rensburg, E. J., Varon-Mateeva, R., Wang, Z., Wang-Gohrke, S., Weiderpass, E., Weitzel, J. N., Whittemore, A. S., Wildiers, H., Winqvist, R., Yang, X. R., Yannoukakos, D., Yao, S., Zamora, P. M., Zheng, W., Hall, P., Kraft, P., Vachon, C. M., Slager, S., Chenevix-Trench, G., Pharoah, P. D. P., Monteiro, A. N. A., García-Closas, M., Easton, D. F. & Antoniou, A. C., 27 Apr 2016, In : Nature Communications. 7, 13 p., 11375.

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    49 Citations (Scopus)
  • Minimum message length analysis of multiple short time series

    Schmidt, D. F. & Makalic, E., Mar 2016, In : Statistics and Probability Letters. 110, p. 318-328 11 p.

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    1 Citation (Scopus)
  • Nutritional predictors of chronic disease in a Central Australian Aboriginal cohort: a multi-mixture modelling analysis

    Luke, J. N., Schmidt, D. F., Ritte, R., O'Dea, K., Brown, A., Piers, L. S., Jenkins, A. J. & Rowley, K. G., Feb 2016, In : Nutrition Metabolism and Cardiovascular Diseases. 26, 2, p. 162-168 7 p.

    Research output: Contribution to journalArticleResearchpeer-review

    1 Citation (Scopus)
  • Quantifying the utility of single nucleotide polymorphisms to guide colorectal cancer screening

    Jenkins, M. A., Makalic, E., Dowty, J. G., Schmidt, D. F., Dite, G. S., MacInnis, R. J., Ait Ouakrim, D., Clendenning, M., Flander, L. B., Stanesby, O. K., Hopper, J. L., Win, A. K. & Buchanan, D. D., 2016, In : Future Oncology. 12, 4, p. 503-513 11 p.

    Research output: Contribution to journalArticleResearchpeer-review

    20 Citations (Scopus)
  • Subset selection in linear regression using sequentially normalized least squares: asymptotic theory

    Määttä, J., Schmidt, D. F. & Roos, T., 6 Oct 2016, In : Scandinavian Journal of Statistics. 43, 2, p. 382-395 14 p.

    Research output: Contribution to journalArticleResearchpeer-review

    7 Citations (Scopus)
  • Use of a novel nonparametric version of DEPTH to identify genomic regions associated with prostate cancer risk

    MacInnis, R. J., Schmidt, D. F., Makalic, E., Severi, G., Fitzgerald, L. M., Reumann, M., Kapuscinski, M. K., Kowalczyk, A., Zhou, Z., Goudey, B., Qian, G., Bui, Q. M., Park, D. J., Freeman, A., Southey, M. C., Al Olama, A. A., Kote-Jarai, Z., Eeles, R. A., for the UK Genetic Prostate Cancer Study Collaborators, Hopper, J. L. & 1 others, Giles, G. G., 1 Dec 2016, In : Cancer Epidemiology, Biomarkers & Prevention. 25, 12, p. 1619-1624 6 p.

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    2 Citations (Scopus)
  • 2015

    Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer

    Michailidou, K., Beesley, J., Lindstrom, S., Canisius, S., Dennis, J., Lush, M. J., Maranian, M. J., Bolla, M. K., Wang, Q., Shah, M., Perkins, B. J., Czene, K., Eriksson, M., Darabi, H., Brand, J. S., Bojesen, S. E., Nordestgaard, B. G., Flyger, H., Nielsen, S. F., Rahman, N. & 228 others, Turnbull, C., Fletcher, O., Peto, J., Gibson, L., Dos-Santos-Silva, I., Chang-Claude, J., Flesch-Janys, D., Rudolph, A., Eilber, U., Behrens, S., Nevanlinna, H., Muranen, T. A., Aittomäki, K., Blomqvist, C., Khan, S., Aaltonen, K., Ahsan, H., Kibriya, M. G., Whittemore, A. S., John, E. M., Malone, K. E., Gammon, M. D., Santella, R. M., Ursin, G., Makalic, E., Schmidt, D. F., Casey, G., Hunter, D. J., Gapstur, S. M., Gaudet, M. M., Diver, W. R., Haiman, C. A., Schumacher, F., Henderson, B. E., Le Marchand, L., Berg, C. D., Chanock, S. J., Figueroa, J. D., Hoover, R. N., Lambrechts, D., Neven, P., Wildiers, H., Van Limbergen, E., Schmidt, M. K., Broeks, A., Verhoef, S., Cornelissen, S., Couch, F. J., Olson, J. E., Hallberg, E., Vachon, C. M., Waisfisz, Q., Meijers-Heijboer, H., Adank, M. A., Van Der Luijt, R. B., Li, J., Liu, J., Humphreys, K., Kang, D., Choi, J. Y., Park, S. K., Yoo, K-Y., Matsuo, K., Ito, H., Iwata, H., Tajima, K., Guénel, P., Truong, T., Mulot, C., Sanchez, M., Burwinkel, B., Marme, F., Surowy, H., Sohn, C., Wu, A. H., Tseng, C-C., Berg, D., Stram, D. O., González-Neira, A., Benitez, J., Pilar Zamora, M., Perez, J. I. A., Shu, X-O., Lu, W., Gao, Y-T., Cai, H., Cox, A., Cross, S. S., Reed, M. W. R., Andrulis, I. L., Knight, J. A., Glendon, G., Mulligan, A. M., Sawyer, E. J., Tomlinson, I. P., Kerin, M. J., Miller, N., Lindblom, A., Margolin, S., Teo, S-H., Yip, C. H., Taib, N. A. M., Tan, G. H., Hooning, M. J., Hollestelle, A., Martens, J. W. M., Margriet Collée, J., Blot, W., Signorello, L. B., Cai, Q., Hopper, J. L., Southey, M. C., Tsimiklis, H., Apicella, C., Shen, C-Y., Hsiung, C-N., Wu, P-E., Hou, M-F., Kristensen, V. N., Nord, S., Alnaes, G. I. G., Giles, G. G., Milne, R. L., McLean, C., Canzian, F., Trichopoulos, D., Peeters, P., Lund, E. E., Sund, M., Khaw, K-T., Gunter, M. J., Palli, D., Mortensen, L. M., Dossus, L., Huerta, J. M., Meindl, A., Schmutzler, R. K., Sutter, C., Yang, R., Muir, K., Lophatananon, A., Stewart-Brown, S., Siriwanarangsan, P., Hartman, M., Miao, H., Chia, K. S., Chan, C. W., Fasching, P. A., Hein, A., Beckmann, M. W., Haeberle, L., Brenner, H., Dieffenbach, A. K., Arndt, V., Stegmaier, C., Ashworth, A., Orr, N., Schoemaker, M. J., Swerdlow, A. J., Brinton, L., Garcia-Closas, M., Zheng, W., Deming Halverson, S. L., Shrubsole, M., Long, J., Goldberg, M. S., Labrèche, F., Dumont, M., Winqvist, R., Pylkäs, K., Jukkola-Vuorinen, A., Grip, M., Brauch, H., Hamann, U., Brüning, T., Radice, P., Peterlongo, P., Manoukian, S., Bernard, L., Bogdanova, N. V., Dörk, T., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Devilee, P., Tollenaar, R. A. E. M., Seynaeve, C., Van Asperen, C. J., Jakubowska, A., Lubinski, J., Jaworska, K., Huzarski, T., Sangrajrang, S., Gaborieau, V., Brennan, P., McKay, J., Slager, S., Toland, A. E., Ambrosone, C. B., Yannoukakos, D., Kabisch, M., Torres, D., Neuhausen, S. L., Anton-Culver, H., Luccarini, C., Baynes, C., Ahmed, S., Healey, C. S., Tessier, D. C., Vincent, D., Bacot, F., Pita, G., Alonso, M. R., Álvarez, N., Herrero, D., Simard, J., Pharoah, P. D. P., Kraft, P., Dunning, A. M., Chenevix-Trench, G., Hall, P., Easton, D. F., The Breast and Ovarian Cancer Susceptibility (BOCS) Study, kConFab Investigators, AOCS Group, NBCS Collaborators & The GENICA Network, Apr 2015, In : Nature Genetics. 47, 4, p. 373-380 8 p.

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    321 Citations (Scopus)
  • Identification and characterization of novel associations in the CASP8/ALS2CR12 region on chromosome 2 with breast cancer risk

    Wei-Yu Lin, L., Camp, N. J., Ghoussaini, M., Beesley, J., Michailidou, K., Hopper, J. L., Apicella, C., Southey, M. C., Stone, J. L., Schmidt, M. K., Broeks, A., Van't Veer, L. J., Th Rutgers, E. J., Muir, K., Lophatananon, A., Stewart-Brown, S., Siriwanarangsan, P., Fasching, P. A., Haeberle, L., Ekici, A. B. & 205 others, Beckmann, M. W., Peto, J., Dos-Santos-Silva, I., Fletcher, O., Johnson, N., Bolla, M. K., Wang, Q., Dennis, J., Sawyer, E. J., Cheng, T., Tomlinson, I. P., Kerin, M. J., Miller, N., Frederik Marmé, M., Surowy, H. M., Burwinkel, B., Guénel, P., Truong, T., Menegaux, F., Mulot, C., Bojesen, S. E., Nordestgaard, B. G., Nielsen, S. F., Flyger, H., Benitez, J., Pilar Zamora, M., Perez, J. I. A., Menéndez, P., González-Neira, A., Pita, G., Rosario Alonso, M., Álvarez, N., Herrero, D., Anton-Culver, H., Brenner, H., Dieffenbach, A. K., Arndt, V., Stegmaier, C., Meindl, A., Lichtner, P., Schmutzler, R. K., Müller-Myhsok, B., Brauch, H., Brüning, T., Ko, Y-D., Tessier, D. C., Vincent, D., Bacot, F., Nevanlinna, H., Aittomäki, K., Blomqvist, C., Khan, S., Matsuo, K., Ito, H., Iwata, H., Horio, A., Bogdanova, N. V., Antonenkova, N., Dörk, T., Lindblom, A., Margolin, S., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Wu, A. H., Tseng, C-C., Berg, D., Stram, D. O., Neven, P., Wauters, E., Wildiers, H., Lambrechts, D., Chang-Claude, J., Rudolph, A., Seibold, P., Flesch-Janys, D., Radice, P., Peterlongo, P., Manoukian, S., Bonanni, B., Couch, F. J., Wang, X., Vachon, C. M., Purrington, K. S., Giles, G. G., Milne, R. L., Mclean, C., Haiman, C. A., Henderson, B. E., Schumacher, F., Marchand, L. L., Simard, J., Goldberg, M. S., Labrèche, F., Dumont, M., Teo, S-H., Yip, C. H., Hassan, N., Vithana, E. N., Kristensen, V., Zheng, W., Deming-Halverson, S., Shrubsole, M. J., Long, J., Winqvist, R., Pylkäs, K., Jukkola-Vuorinen, A., Kauppila, S., Andrulis, I. L., Knight, J. A., Glendon, G., Tchatchou, S., Devilee, P., Tollenaar, R. A. E. M., Seynaeve, C., Van Asperen, C. J., García-Closas, M., Figueroa, J. D., Lissowska, J., Brinton, L., Czene, K., Darabi, H., Eriksson, M., Brand, J. S., Hooning, M. J., Hollestelle, A., Van DenOuweland, A. M. W., Jager, A., Li, J., Liu, J., Humphreys, K., Shu, X-O., Lu, W., Gao, Y-T., Cai, H., Cross, S. S., Reed, M. W. R., Blot, W., Signorello, L. B., Cai, Q., Pharoah, P. D. P., Perkins, B., Shah, M., Blows, F. M., Kang, D., Yoo, K-Y., Noh, D-Y., Hartman, M., Miao, H., Chia, K. S., Putti, T. C., Hamann, U., Luccarini, C., Baynes, C., Ahmed, S., Maranian, M. J., Healey, C. S., Jakubowska, A., Lubinski, J., Jaworska-Bieniek, K., Durda, K., Sangrajrang, S., Gaborieau, V., Brennan, P., McKay, J., Slager, S., Toland, A. E., Yannoukakos, D., Shen, C-Y., Hsiung, C-N., Wu, P-E., Ding, S. L., Ashworth, A., Jones, M., Orr, N., Swerdlow, A. J., Tsimiklis, H., Makalic, E., Schmidt, D. F., Bui, Q. M., Chanock, S. J., Hunter, D. J., Hein, R., Dahmen, N., Beckmann, L., Aaltonen, K., Muranen, T. A., Heikkinen, T., Irwanto, A. K., Rahman, N., Turnbull, C. A., Waisfisz, Q., Meijers-Heijboer, H. E. J., Adank, M. A., Van Der Luijt, R. B., Hall, P., Chenevix-Trench, G., Dunning, A. M., Easton, D. F., Cox, A., The GENICA Network, kConFab Investigators, Australian Ovarian Cancer Study Group (AOCS) & The Breast and Ovarian Cancer Susceptibility (BOCS) Study, 1 Jan 2015, In : Human Molecular Genetics. 24, 1, p. 285-298 14 p.

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  • Quantifying the cumulative effect of low-penetrance genetic variants on breast cancer risk

    Smyth, C., Špakulova, I., Cotton-Barratt, O., Rafiq, S., Tapper, W., Upstill-Goddard, R., Hopper, J. L., Makalic, E., Schmidt, D. F., Kapuscinski, M., Fliege, J., Collins, A., Brodzki, J., Eccles, D. M. & Macarthur, B. D., 2015, In : Molecular Genetics and Genomic Medicine. 3, 3, p. 182-188 7 p.

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  • 2014

    A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age

    Ahsan, H., Halpern, J., Kibriya, M. G., Pierce, B. L., Tong, L., Gamazon, E., McGuire, V., Felberg, A., Shi, J., Jasmine, F., Roy, S., Brutus, R., Argos, M., Melkonian, S., Chang-Claude, J., Andrulis, I. L., Hopper, J. L., John, E. M., Malone, K. E., Ursin, G. & 57 others, Gammon, M. D., Thomas, D. C., Seminara, D., Casey, G., Knight, J. A., Southey, M. C., Giles, G. G., Santella, R. M., Lee, E., Conti, D. V., Duggan, D., Gallinger, S., Haile, R. W. C., Jenkins, M., Lindor, N. M., Newcomb, P. A., Michailidou, K., Apicella, C., Park, D. J., Peto, J., Fletcher, O., Silva, I. D. S., Lathrop, M. G., Hunter, D. J., Chanock, S. J., Meindl, A., Schmutzler, R. K., Müller-Myhsok, B., Lochmann, M., Beckmann, L., Hein, R., Makalic, E., Schmidt, D. F., Bui, Q. M., Stone, J. L., Flesch-Janys, D., Dahmen, N., Nevanlinna, H., Aittomäki, K., Blomqvist, C., Hall, P., Czene, K., Irwanto, A. K., Liu, J., Rahman, N., Turnbull, C., Dunning, A. M., for the Familial Breast Cancer Study, Pharoah, P. D. P., Waisfisz, Q., Meijers-Heijboer, H., Uitterlinden, A. G., Rivadeneira, F., Nicolae, D., Easton, D. F., Cox, N. J. & Whittemore, A. S., 2014, In : Cancer Epidemiology, Biomarkers & Prevention. 23, 4, p. 658-669 12 p.

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    54 Citations (Scopus)
  • Common non-synonymous SNPs associated with breast cancer susceptibility: findings from the Breast Cancer Association Consortium

    Milne, R. L., Burwinkel, B., Michailidou, K., Arias Perez, J. I., Pilar Zamora, M., Menéndez-Rodríguez, P., Hardisson, D., Mendiola, M., González-Neira, A., Pita, G., Rosario Alonso, M., Dennis, J., Wang, Q., Bolla, M. K., Swerdlow, A. J., Ashworth, A., Orr, N., Schoemaker, M., Ko, Y-D., Brauch, H. & 161 others, Hamann, U., Andrulis, I. L., Knight, J. A., Glendon, G., Tchatchou, S., Matsuo, K., Ito, H., Iwata, H., Tajima, K., Li, J., Brand, J. S., Brenner, H., Dieffenbach, A. K., Arndt, V., Stegmaier, C., Lambrechts, D., Peuteman, G., Christiaens, M. R., Smeets, A., Jakubowska, A., Lubinski, J., Jaworska-Bieniek, K., Durda, K., Hartman, M., Hui, M., Lim, W. Y., Chan, C. W., Marme, F., Yang, R., Bugert, P., Lindblom, A., Margolin, S., García-Closas, M., Chanock, S. J., Lissowska, J., Figueroa, J. D., Bojesen, S. E., Nordestgaard, B. G., Flyger, H., Hooning, M. J., Kriege, M., van den Ouweland, A. M. W., Koppert, L. B., Fletcher, O., Johnson, N., dos-Santos-Silva, I., Peto, J., Zheng, W., Deming-Halverson, S., Shrubsole, M. J., Long, J., Chang-Claude, J., Rudolph, A., Seibold, P., Flesch-Janys, D., Winqvist, R., Pylkäs, K., Jukkola-Vuorinen, A., Grip, M., Cox, A., Cross, S. S., Reed, M. W. R., Schmidt, M. K., Broeks, A., Cornelissen, S., Braaf, L., Kang, D., Choi, J. Y., Park, S. K., Noh, D-Y., Simard, J., Dumont, M., Goldberg, M. S., Labrèche, F., Fasching, P. A., Hein, A., Ekici, A. B., Beckmann, M. W., Radice, P., Peterlongo, P., Azzollini, J., Barile, M., Sawyer, E. J., Tomlinson, I. P., Kerin, M., Miller, N., Hopper, J. L., Schmidt, D. F., Makalic, E., Southey, M. C., Teo, S-H., Yip, C. H., Sivanandan, K., Tay, W. T., Shen, C-Y., Hsiung, C-N., Yu, J-C., Hou, M-F., Guénel, P., Truong, T., Sanchez, M., Mulot, C., Blot, W., Cai, Q., Nevanlinna, H., Muranen, T. A., Aittomäki, K., Blomqvist, C., Wu, A. H., Tseng, C-C., Berg, D., Stram, D. O., Bogdanova, N., Thilo Dörk, D., Muir, K., Lophatananon, A., Stewart-Brown, S., Siriwanarangsan, P., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Shu, X-O., Lu, W., Gao, Y-T., Zhang, B. S., Couch, F. J., Toland, A. E., Yannoukakos, D., Sangrajrang, S., McKay, J., Wang, X., Olson, J. E., Vachon, C. M., Purrington, K. S., Severi, G., Baglietto, L., Haiman, C. A., Henderson, B. E., Schumacher, F., Marchand, L. L., Devilee, P., Tollenaar, R. A. E. M., Seynaeve, C., Czene, K., Eriksson, M., Humphreys, K., Darabi, H., Ahmed, S., Shah, M., Pharoah, P. D. P., Hall, P., Giles, G. G., Benítez, J., Dunning, A. M., Chenevix-Trench, G., Easton, D. F., The GENICA Network, kConFab Investigators, Australian Ovarian Cancer Study Group (AOCS) & The TNBCC, 15 Nov 2014, In : Human Molecular Genetics. 23, 22, p. 6096-6111 16 p.

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  • FGF receptor genes and breast cancer susceptibility: Results from the Breast Cancer Association Consortium

    Agarwal, D., Pineda, S. S., Michailidou, K., Herranz, J., Pita, G., Moreno-Moyano, L. T., Alonso, M. R., Dennis, J., Wang, Q., Bolla, M. K., Meyer, K. B., Menéndez-Rodríguez, P., Hardisson, D., Mendiola, M., González-Neira, A., Lindblom, A., Margolin, S., Swerdlow, A. J., Ashworth, A., Orr, N. & 161 others, Jones, M., Matsuo, K., Ito, H., Iwata, H., Kondo, N., kConFab Investigators, Australian Ovarian Cancer Study Group (AOCS), Hartman, J. M., Hui, M., Lim, W. Y., Iau, P. T-C., Sawyer, E., Tomlinson, I. P., Kerin, M., Miller, N., Kang, D., Choi, J. Y., Park, S. S., Noh, D-Y., Hopper, J. L., Schmidt, D. F., Makalic, E., Southey, M. C., Teo, S. H., Yip, C. H., Sivanandan, K., Tay, W. T., Brauch, H., Brüning, T., Hamann, U., The GENICA Network, Dunning, A. M., Shah, A. M., Andrulis, I. L., Knight, J. A., Glendon, G., Tchatchou, S., Schmidt, M. K., Broeks, A., Rosenberg, E. H., Van't Veer, L. J., Fasching, P. A., Renner, S. P., Ekici, A. B., Beckmann, M. W., Shen, Y., Hsiung, C-N., Yu, J. C., Hou, M-F., Blot, W., Cai, Q., Wu, A. H., Tseng, C-C., Berg, C. D., Stram, D. O., Cox, A., Brock, I. W., Reed, M. W. R., Muir, K., Lophatananon, A., Stewart-Brown, S., Siriwanarangsan, P., Zheng, W. H., Deming-Halverson, S., Shrubsole, M. J., Long, J., Shu, X-O., Lu, W., Gao, Y. T., Zhang, B., Radice, P., Peterlongo, P., Manoukian, S., Mariette, F., Sangrajrang, S., McKay, J., Couch, F. J., Toland, A. E., Yannoukakos, D., Fletcher, O., Johnson, N., Dos Santos Silva, I., Peto, J., Marme, F., Burwinkel, B., Guénel, P., Truong, T., Sanchez, M., Mulot, C., Bojesen, S. E., Nordestgaard, B. G., Flyer, H., Brenner, H., Dieffenbach, A. K. A., Arndt, V., Stegmaier, C., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Lambrechts, D., Yesilyurt, B. T., Floris, G., Leunen, K., Chang-Claude, J., Rudolph, A., Seibold, P., Flesch-Janys, D., Wang, X., Olson, J. E., Vachon, C. M., Purrington, K. S., Giles, G. G., Severi, G., Baglietto, L., Haiman, C. A., Henderson, B. E., Schumacher, F., Le Marchand, L., Simard, J., Dumont, L. M., Goldberg, M. S., Labrèche, F., Winqvist, R., Pylkäs, K., Jukkola-Vuorinen, A., Grip, M., Devilee, P., E M Tollenaar, R. A., Seynaeve, C., García-Closas, M., Chanock, S. J., Lissowska, J., Figueroa, J. D., Czene, K., Eriksson, M., Humphreys, K., Darabi, H., Hooning, M. J., Kriege, M., Collée, J. M., Tilanus-Linthorst, M. M. A., Li, J., Jakubowska, A., Lubinski, M. J., Jaworska-Bieniek, K., Durda, K., Nevanlinna, H., Muranen, T. A., Aittomäki, K., Blomqvist, C., Bogdanova, N., Thilo Dörk, D., Chenevix-Trench, G., Hall, P., Easton, D. F., P Pharoah, P. D., Arias-Perez, J. I., Zamora, P., Benítez, J. & Milne, R. L., 18 Feb 2014, In : British Journal of Cancer. 110, 4, p. 1088-1100 13 p.

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    18 Citations (Scopus)
  • Identification of new genetic susceptibility loci for breast cancer through consideration of gene-environment interactions

    Schoeps, A., Rudolph, A., Seibold, P., Dunning, A. M., Milne, R. L., Bojesen, S. E., Swerdlow, A. J., Andrulis, I. L., Brenner, H., Behrens, S., Orr, N., Jones, M., Ashworth, A., Li, J., Cramp, H. E., Connley, D., Czene, K., Darabi, H., Chanock, S. J., Lissowska, J. & 61 others, Figueroa, J. D., Knight, J. A., Glendon, G., Mulligan, A. M., Dumont, M., Severi, G., Baglietto, L., Olson, J. E., Vachon, C. M., Purrington, K. S., Moisse, M., Neven, P., Wildiers, H., Spurdle, A. B., Kosma, V-M., Kataja, V., Hartikainen, J. M., Hamann, U., Ko, Y-D., Dieffenbach, A. K., Arndt, V., Stegmaier, C., Malats, N., Arias Perez, J. I., Benítez, J., Flyger, H., Nordestgaard, B. G., Truong, T., Cordina-Duverger, E., Menegaux, F., dos Santos Silva, I., Fletcher, O., Johnson, N., Häberle, L., Beckmann, M. W., Ekici, A. B., Braaf, L., Atsma, F., van den Broek, A. J., Makalic, E., Schmidt, D. F., Southey, M. C., Cox, A., Simard, J., Giles, G. G., Lambrechts, D., Mannermaa, A., Brauch, H., Guénel, P., Peto, J., Fasching, P. A., Hopper, J., Flesch-Janys, D., Couch, F. J., Chenevix-Trench, G., Pharoah, P. D. P., Garcia-Closas, M., Schmidt, M. K., Hall, P., Easton, D. F. & Chang-Claude, J., Jan 2014, In : Genetic Epidemiology. 38, 1, p. 84-93 10 p.

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    21 Citations (Scopus)
  • 2013

    Estimation of stationary autoregressive models with the Bayesian LASSO

    Schmidt, D. F. & Makalic, E., 23 Aug 2013, In : Journal of Time Series Analysis. 34, 5, p. 517-531 15 p.

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    8 Citations (Scopus)
  • Evidence of Gene-Environment Interactions between Common Breast Cancer Susceptibility Loci and Established Environmental Risk Factors

    Nickels, S., Truong, T., Hein, R., Stevens, K. N., Buck, K., Behrens, S., Eilber, U., Schmidt, M., Häberle, L., Vrieling, A., Gaudet, M. M., Figueroa, J. D., Schoof, N., Spurdle, A. B., Rudolph, A., Fasching, P. A., Hopper, J. L., Makalic, E., Schmidt, D. F., Southey, M. C. & 91 others, Beckmann, M. W., Ekici, A. B., Fletcher, O., Gibson, L., dos Santos Silva, I., Peto, J., Humphreys, M. K., Wang, J. S., Cordina-Duverger, E., Menegaux, F., Nordestgaard, B. G., Bojesen, S. E., Lanng, C., Anton-Culver, H., Ziogas, A., Bernstein, L., Clarke, C. A., Brenner, H., Müller, H., Arndt, V., Stegmaier, C., Brauch, H., Brüning, T., Harth, V., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Lambrechts, D., Smeets, D., Neven, P., Paridaens, R., Flesch-Janys, D., Obi, N., Wang-Gohrke, S., Couch, F. J., Olson, J. E., Vachon, C. M., Giles, G. G., Severi, G., Baglietto, L., Offit, K., John, E. M., Miron, A., Andrulis, I. L., Knight, J. A., Glendon, G., Mulligan, A. M., Chanock, S. J., Lissowska, J., Liu, J., Cox, A., Cramp, H. E., Connley, D., Balasubramanian, S. P., Dunning, A. M., Shah, M., Trentham-Dietz, A., Newcomb, P. A., Titus, L., Egan, K., Cahoon, E. K., Rajaraman, P., Sigurdson, A. J., Doody, M., Guénel, P., Pharoah, P. D. P., Schmidt, M. K., Hall, P., Easton, D. F., Garcia-Closas, M., Milne, R. L., Chang-Claude, J., Christina Justenhoven, H. B., Ko, Y-D., Baisch, C., Fischer, H-P., Hamann, U., Pesch, B., Rabstein, S., Lotz, A., Myöhänen, E., Kemiläinen, H., Thorne, H. J., Niedermayr, E., Bowtell, D. D. L., Chenevix-Trench, G., DeFazio, A., Gertig, D. M., Green, A. & Webb, P., 2013, In : PLoS Genetics. 9, 3, e1003284.

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    109 Citations (Scopus)
  • Explaining variance in the Cumulus mammographic measures that predict breast cancer risk: A twins and sisters study

    Nguyen, T. L., Schmidt, D. F., Makalic, E., Dite, G. S., Stone, J. L., Apicella, C., Bui, M., MacInnis, R. J., Odefrey, F., Cawson, J. N., Treloar, S. A., Southey, M. C., Giles, G. G. & Hopper, J. L., Dec 2013, In : Cancer Epidemiology, Biomarkers & Prevention. 22, 12, p. 2395-2403 9 p.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
    22 Citations (Scopus)
  • Large-scale genotyping identifies 41 new loci associated with breast cancer risk

    Michailidou, K., Hall, P., Gonzalez-Neira, A., Ghoussaini, M., Dennis, J., Milne, R. L., Schmidt, M. K., Chang-Claude, J., Bojesen, S. E., Bolla, M. K., Wang, Q., Dicks, E., Lee, A., Turnbull, C., Rahman, N., Fletcher, O., Peto, J., Gibson, L., Dos Santos Silva, I., Nevanlinna, H. & 199 others, Muranen, T. A., Aittomäki, K., Blomqvist, C., Czene, K., Irwanto, A. K., Liu, J., Waisfisz, Q., Meijers-Heijboer, H., Adank, M., Van Der Luijt, R. B., Hein, R., Dahmen, N., Beckman, L., Meindl, A., Schmutzler, R. K., Müller-Myhsok, B., Lichtner, P., Hopper, J. L., Southey, M. C., Makalic, E., Schmidt, D. F., Uitterlinden, A. G., Hofman, A., Hunter, D. J., Chanock, S. J., Vincent, D., Bacot, F., Tessier, D. C., Canisius, S., Wessels, L. F. A., Haiman, C. A., Shah, M., Luben, R., Brown, J., Luccarini, C., Schoof, N., Humphreys, K., Li, J., Nordestgaard, B. G., Nielsen, S. F., Flyger, H., Couch, F. J., Wang, X., Vachon, C. M., Stevens, K. N., Lambrechts, D., Moisse, M., Paridaens, R., Christiaens, M. R., Rudolph, A., Nickels, S., Flesch-Janys, D., Johnson, N., Aitken, Z., Aaltonen, K., Heikkinen, T., Broeks, A., Veer, L. J. V. T., van der Schoot, C. E., Guénel, P., Truong, T., Laurent-Puig, P., Menegaux, F., Marme, F., Schneeweiss, A., Sohn, C., Burwinkel, B., Zamora, P. M., Perez, J. I. A., Pita, G., Alonso, M. R., Cox, A., Brock, I. W., Cross, S. S., Reed, M. W. R., Sawyer, E. J., Tomlinson, I. P., Kerin, M. J., Miller, N., Henderson, B. E., Schumacher, F., Le Marchand, L., Andrulis, I. L., Knight, J. A., Glendon, G., Mulligan, A. M., Lindblom, A., Margolin, S., Hooning, M. J., Hollestelle, A., van den Ouweland, A. M. W., Jager, A., Bui, Q. M., Stone, J. L., Dite, G. S., Apicella, C., Tsimiklis, H., Giles, G. G., Severi, G., Baglietto, L., Fasching, P. A., Haeberle, L., Ekici, A. B., Beckmann, M. W., Brenner, H., Müller, H., Arndt, V., Stegmaier, C., Swerdlow, A. J., Ashworth, A., Orr, N., Jones, M., Figueroa, J. D., Lissowska, J., Brinton, L., Goldberg, M. S., Labrèche, F., Dumont, M., Winqvist, R., Pylkäs, K., Jukkola-Vuorinen, A., Grip, M., Brauch, H., Hamann, U., Brüning, T., Radice, P., Peterlongo, P., Manoukian, S., Bonanni, B., Devilee, P., Tollenaar, R. A. E. M., Seynaeve, C., Van Asperen, C. J., Jakubowska, A., Lubinski, J., Jaworska, K., Durda, K., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J. M., Bogdanova, N. V., Antonenkova, N., Dörk, T., Kristensen, V. N., Anton-Culver, H., Slager, S., Toland, A. E., Edge, S., Fostira, F., Kang, D., Yoo, K-Y., Noh, D-Y., Matsuo, K., Ito, H., Iwata, H., Sueta, A., Wu, A. H., Tseng, C-C., Berg, D., Stram, D. O., Shu, X-O., Lu, W., Gao, Y-T., Cai, H., Teo, S-H., Yip, C. H., Phuah, S. Y., Cornes, B. K., Hartman, M., Miao, H., Lim, W. Y., Sng, J. H., Muir, K., Lophatananon, A., Stewart-Brown, S., Siriwanarangsan, P., Shen, C-Y., Hsiung, C-N., Wu, P-E., Ding, S. L., Sangrajrang, S., Gaborieau, V., Brennan, P., McKay, J., Blot, W. J., Signorello, L. B., Cai, Q., Zheng, W., Deming-Halverson, S., Shrubsole, M., Long, J., Simard, J., Garcia-Closas, M., Pharoah, P. D. P., Chenevix-Trench, G., Dunning, A. M., Benitez, J. & Easton, D. F., Apr 2013, In : Nature Genetics. 45, 4, p. 353-361 9 p.

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    734 Citations (Scopus)
  • Variants in the VEGFA gene and treatment outcome after anti-VEGF treatment for neovascular age-related macular degeneration

    Abedi, F., Wickremasinghe, S., Richardson, A. J., Makalic, E., Schmidt, D. F., Sandhu, S. S., Baird, P. N. & Guymer, R. H., Jan 2013, In : Ophthalmology. 120, 1, p. 115-121 7 p.

    Research output: Contribution to journalArticleResearchpeer-review

    56 Citations (Scopus)
  • 2012

    A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11

    Siddiq, A., Couch, F. J., Chen, G. K., Lindström, S., Eccles, D. M., Millikan, R. C., Michailidou, K., Stram, D. O., Beckmann, L., Rhie, S. K., Ambrosone, C. B., Aittomäki, K., Amiano, P., Apicella, C., Baglietto, L., Bandera, E. V., Beckmann, M. W., Berg, C. D., Bernstein, L., Blomqvist, C. & 121 others, Brauch, H., Brinton, L., Bui, Q. M., Buring, J. E., Buys, S. S., Campa, D., Carpenter, J. E., Chasman, D. I., Chang-Claude, J., Chen, C., Clavel-Chapelon, F., Cox, A., Cross, S. S., Czene, K., Deming Halverson, S. L., Diasio, R. B., Ryan Diver, W., Dunning, A. M., Durcan, L., Ekici, A. B., Fasching, P. A., Feigelson, H. S., Fejerman, L., Figueroa, J. D., Fletcher, O., Flesch-Janys, D., Gaudet, M. M., Gerty, S. M., Rodriguez-Gil, J. L., Giles, G. G., Van Gils, C. H., Godwin, A. K., Graham, N. J., Greco, D., Hall, P., Hankinson, S. E., Hartmann, A., Hein, R., Heinz, J., Hoover, R. N., Hopper, J. L., Hu, J. J., Huntsman, S., Ingles, S. A., Irwanto, A. K., Isaacs, C. J. D., Jacobs, K. B., John, E. M., Justenhoven, C., Kaaks, R. J., Kolonel, L. N., Coetzee, G. A., Lathrop, M. G., Marchand, L. L., Lee, A. M., Lee, I-M., Lesnick, T., Lichtner, P., Liu, J., Lund, E. E., Makalic, E., Martin, N. G., McLean, C. A., Meijers-Heijboer, H., Meindl, A., Miron, P., Monroe, K. R., Montgomery, G. W., Müller-Myhsok, B., Nickels, S., Nyante, S. J., Olswold, C., Overvad, K., Palli, D., Park, D. J., Palmer, J. R., Pathak, H., Peto, J., Pharoah, P. D. P., Rahman, N., Rivadeneira, F., Schmidt, D. F., Schmutzler, R. K., Slager, S., Southey, M. C., Stevens, K. N., Sinn, H. P., Press, M. F., Ross, E., Riboli, E. B., Ridker, P. M., Schumacher, F. R., Severi, G., dos Santos Silva, I., Stone, J. L., Sund, M., Tapper, W. J., Thun, M. J., Travis, R. C., Turnbull, C., Uitterlinden, A. G., Waisfisz, Q., Wang, X., Wang, Z., Weaver, J. E., Schulz-Wendtland, R., Wilkens, L. R., Berg, D., Zheng, W., Ziegler, R. G., Ziv, E., Nevanlinna, H., Easton, D. F., Hunter, D. J., Henderson, B. E., Chanock, S. J., Garcia-Closas, M., Kraft, P., Haiman, C. A., Vachon, C. M. & Australian Breast Cancer Tissue Bank Investigators, 2012, In : Human Molecular Genetics. 21, 24, p. 5373-5384 12 p., dds381.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
    133 Citations (Scopus)
  • The consistency of MDL for linear regression models with increasing signal-to-noise ratio

    Schmidt, D. F. & Makalic, E., 2012, In : IEEE Transactions on Signal Processing. 60, 3, p. 1508-1510 3 p., 6095654.

    Research output: Contribution to journalArticleResearchpeer-review

    19 Citations (Scopus)
  • Tumour morphology of early-onset breast cancers predicts breast cancer risk for first-degree relatives: the Australian Breast Cancer Family Registry

    Dite, G. S., Makalic, E., Schmidt, D. F., Giles, G. G., Hopper, J. L. & Southey, M. C., 28 Aug 2012, In : Breast Cancer Research. 14, 4, R122.

    Research output: Contribution to journalArticleResearchpeer-review

    Open Access
    9 Citations (Scopus)
  • 2011

    FAN1 variants identified in multiple-case early-onset breast cancer families via exome sequencing: No evidence for association with risk for breast cancer

    Park, D. J., Odefrey, F. A., Hammet, F., Giles, G. G., Baglietto, L., Abcfs, McCs, Hopper, J. L., Schmidt, D. F., Makalic, E., Sinilnikova, O. M., Goldgar, D. E. & Southey, M. C., Dec 2011, In : Breast Cancer Research and Treatment. 130, 3, p. 1043-1049 7 p.

    Research output: Contribution to journalArticleResearchpeer-review

    14 Citations (Scopus)
  • Melanoma risk for CDKN2A mutation carriers who are relatives of population-based case carriers in Australia and the UK

    Jenkins, M. A., Harland, M., Makalic, E., Schmidt, D., Dowty, J. G., Aitken, J. F., Agha-Hamilton, C., Armstrong, B. K., Barrett, J. H., Chan, M., Chang, Y. M., Gascoyne, J., Giles, G. G., Holland, E. A., Kefford, R. F., Kukalizch, K., Lowery, J., Randerson-Moor, J. A., Schmid, H., Taylor, C. F. & 6 others, Whitaker, L., Hopper, J. L., Newton-Bishop, J. A., Mann, G. J., Bishop, D. T. & Jenkins, M. A., Apr 2011, In : Journal of Medical Genetics. 48, 4, p. 266-272 7 p.

    Research output: Contribution to journalArticleResearchpeer-review

    24 Citations (Scopus)
  • 2010

    Estimating the order of an autoregressive model using normalized maximum likelihood

    Schmidt, D. F. & Makalic, E., 2010, In : IEEE Transactions on Signal Processing. 59, 2, p. 479-487 9 p., 5629447.

    Research output: Contribution to journalArticleResearchpeer-review

    6 Citations (Scopus)