Projects per year
Personal profile
Biography
Dr Chen Li completed his PhD with A/Prof Ashley Buckle and A/Prof Jiangning Song at the Department of Biochemistry and Molecular Biology and Monash Biomedicine Discovery Institute, Monash University in 2016, where he focused on developing bioinformatic algorithms and databases for analysing the relationship between protein structure, function and disease. After completing his PhD study, Chen moved to the laboratories of Prof Anthony Purcell and Prof Jian Li at the Monash Biomedicine Discovery Institute as a research bioinformatician, and have since extended his research into proteomics and immunopeptidomics.
Chen is now working in the Purcell Lab at Monash University as a CJ Martin Early Career Research Fellow supported by the Australian National Health and Medical Research Council (NHMRC). His research focuses on integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment.
Research interests
Systems Proteomics; Immunopeptidomics; Cancer; Personalised Medicine; Bioinformatics
Education/Academic qualification
Bioinformatics, PhD, MONASH UNIVERSITY
External positions
Visiting NHMRC CJ Martin Fellow, ETH Zurich
Mar 2018 → Feb 2020Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Projects
- 2 Finished
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Investigation and prediction of colorectal cancer neoepitopes and their immunological responses
1/03/17 → 29/12/17
Project: Research
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Targeting outer membrane vesicles of Gram-negative ‘superbug’ Acinetobacter baumannii: A systems and computational approach
2/01/17 → 30/04/18
Project: Research
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ILearnPlus: A comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
Chen, Z., Zhao, P., Li, C., Li, F., Xiang, D., Chen, Y., Akutsu, T., Daly, R. J., Webb, G. I., Zhao, Q., Kurgan, L. & Song, J., 4 Jun 2021, In: Nucleic Acids Research. 49, 10, 19 p., e60.Research output: Contribution to journal › Article › Research › peer-review
Open Access2 Citations (Scopus) -
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data
Fossati, A., Li, C., Uliana, F., Wendt , F., Frommelt, F., Sykacek, P., Heusel , M., Hallal, M., Bludau, I., Capraz , T., Xue, P., Song, J., Wollscheid, B., Purcell, A. W., Gstaiger , M. & Aebersold, R., May 2021, In: Nature Methods. 18, 5, p. 520-527 8 p.Research output: Contribution to journal › Article › Research › peer-review
2 Citations (Scopus) -
Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies
Li, C., Revote, J., Ramarathinam, S. H., Chung, S. Z., Croft, N. P., Scull, K. E., Huang, Z., Ayala, R., Braun, A., Mifsud, N. A., Illing, P. T., Faridi, P. & Purcell, A. W., 2021, (Accepted/In press) In: Proteomics. 11 p., 2100036.Research output: Contribution to journal › Article › Research › peer-review
Open Access -
ColistinDose, a mobile app for determining intravenous dosage regimens of colistimethate in critically ill adult patients: Clinician-centered design and development study
Hua, X., Li, C., Pogue, J. M., Sharma, V. S., Karaiskos, I., Kaye, K. S., Tsuji, B. T., Bergen, P. J., Zhu, Y., Song, J. & Li, J., Dec 2020, In: JMIR mHealth and uHealth. 8, 12, 9 p., e20525.Research output: Contribution to journal › Article › Research › peer-review
Open Access -
Correction: ColistinDose, a Mobile App for Determining Intravenous Dosage Regimens of Colistimethate in Critically Ill Adult Patients: Clinician-Centered Design and Development Study (JMIR mHealth and uHealth (2020) 8 12 (e20525))
Hua, X., Li, C., Pogue, J. M., Sharma, V. S., Karaiskos, I., Kaye, K. S., Tsuji, B. T., Bergen, P. J., Zhu, Y., Song, J. & Li, J., 18 Dec 2020, In: JMIR mHealth and uHealth. 8, 12, 2 p., e26593.Research output: Contribution to journal › Comment / Debate › Other › peer-review
Open Access
Prizes
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2017 Hans Neurath Outstanding Promise Travel Award
Li, Chen (Recipient), 2017
Prize: Prize (including medals and awards)
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Harnessing systems biology by integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment
Li, Chen (Recipient), 2018
Prize: Competitive Fellowships
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HUPO 2019 Early Career Research (ECR) Travel Award
Li, Chen (Recipient), 27 Jul 2019
Prize: Prize (including medals and awards)
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Briefings in Bioinformatics (Journal)
Chen Li (Peer reviewer)
2017 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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Molecular Genetics and Genomics (Journal)
Chen Li (Peer reviewer)
2016 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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University of Technology Sydney
Chen Li (Visiting researcher)
6 Jun 2016Activity: Visiting an external institution types › Visiting an external academic institution
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International Journal of Antimicrobial Agents (Journal)
Chen Li (Peer reviewer)
2016 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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Briefly introducing the laboratories and their research works.
Chen Li (Contributor)
14 Nov 2016Activity: Community Talks, Presentations, Exhibitions and Events › Public event
Press / Media
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Our immune system splices together “Frankenstein Proteins”
2/11/18
1 item of Media coverage
Press/Media: Research
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Bioinformatics tool to unearth new pointers to disease
10/07/18
1 item of Media coverage
Press/Media: Research
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Congratulations to our successful NHMRC Fellows
23/10/17
1 item of Media coverage
Press/Media: Research