Chen Li

Dr

20082020

Research output per year

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Personal profile

Biography

Dr Chen Li completed his PhD with A/Prof Ashley Buckle and A/Prof Jiangning Song at the Department of Biochemistry and Molecular Biology and Monash Biomedicine Discovery Institute, Monash University in 2016, where he focused on developing bioinformatic algorithms and databases for analysing the relationship between protein structure, function and disease. After completing his PhD study, Chen moved to the laboratories of Prof Anthony Purcell and Prof Jian Li at the Monash Biomedicine Discovery Institute as a research bioinformatician, and have since extended his research into proteomics and immunopeptidomics.

Chen is now working in the Purcell Lab at Monash University as a CJ Martin Early Career Research Fellow supported by the Australian National Health and Medical Research Council (NHMRC). His research focuses on integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment. 

Research interests

Systems Proteomics; Immunopeptidomics; Cancer; Personalised Medicine; Bioinformatics

Education/Academic qualification

Bioinformatics, PhD, MONASH UNIVERSITY

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Projects

Research Output

Pan-transcriptomic analysis identified common differentially expressed genes of Acinetobacter baumannii in response to polymyxin treatments

Li, M., Aye, S. M., Ahmed, M. U., Han, M-L., Li, C., Song, J., Boyce, J. D., Powell, D. R., Azad, M. A. K., Velkov, T., Zhu, Y. & Li, J., 1 Aug 2020, In : Molecular Omics. 16, 4, p. 327-338 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Regulating polymyxin resistance in Gram-negative bacteria: roles of two-component systems PhoPQ and PmrAB

Huang, J., Li, C., Song, J., Velkov, T., Wang, L., Zhu, Y. & Li, J., 6 Apr 2020, In : Future Microbiology. 15, 6, p. 445-459 15 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

2 Citations (Scopus)

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model

Sajic, T., Ciuffa, R., Lemos, V., Xu, P., Leone, V., Li, C., Williams, E. G., Makris, G., Banaei-Esfahani, A., Heikenwalder, M., Schoonjans, K. & Aebersold, R., 6 May 2019, In : Scientific Reports. 9, 1, 20 p., 6913.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
3 Citations (Scopus)

Large-scale comparative assessment of computational predictors for lysine post-translational modification sites

Chen, Z., Liu, X., Li, F., Li, C., Marquez-Lago, T., Leier, A., Akutsu, T., Webb, G. I., Xu, D., Smith, A. I., Li, L., Chou, K. C. & Song, J., Nov 2019, In : Briefings in Bioinformatics. 20, 6, p. 2267-2290 24 p., bby089.

Research output: Contribution to journalArticleResearchpeer-review

18 Citations (Scopus)

Positive-unlabelled learning of glycosylation sites in the human proteome

Li, F., Zhang, Y., Purcell, A. W., Webb, G. I., Chou, K-C., Lithgow, T., Li, C. & Song, J., 6 Mar 2019, In : BMC Bioinformatics. 20, 1, 17 p., 112.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
23 Citations (Scopus)

Prizes

2017 Hans Neurath Outstanding Promise Travel Award

Li, Chen (Recipient), 2017

Prize: Prize (including medals and awards)

EMBO Travel Grant

Li, Chen (Recipient), 2019

Prize: Prize (including medals and awards)

HUPO 2019 Early Career Research (ECR) Travel Award

Li, Chen (Recipient), 27 Jul 2019

Prize: Prize (including medals and awards)

Top Ten Best Papers

Li, Chen (Recipient), Dec 2014

Prize: Prize (including medals and awards)

Activities

  • 6 Peer review responsibility
  • 1 Public event
  • 1 Visiting an external academic institution

Briefings in Bioinformatics (Journal)

Chen Li (Peer reviewer)

2017 → …

Activity: Publication peer-review and editorial work typesPeer review responsibility

Molecular Genetics and Genomics (Journal)

Chen Li (Peer reviewer)

2016 → …

Activity: Publication peer-review and editorial work typesPeer review responsibility

University of Technology Sydney

Chen Li (Visiting researcher)

6 Jun 2016

Activity: Visiting an external institution typesVisiting an external academic institution

Briefly introducing the laboratories and their research works.

Chen Li (Contributor)

14 Nov 2016

Activity: Community Talks, Presentations, Exhibitions and EventsPublic event

BMC Bioinformatics (Journal)

Chen Li (Peer reviewer)

2016 → …

Activity: Publication peer-review and editorial work typesPeer review responsibility

Press / Media

Monash alumni interview

Chen Li

4/02/19

1 Media contribution

Press/Media: Profile/Interview

Our immune system splices together “Frankenstein Proteins”

Chen Li

2/11/18

1 item of Media coverage

Press/Media: Research

The spark that created life

Chen Li

12/09/18

1 item of Media coverage

Press/Media: Research

Bioinformatics tool to unearth new pointers to disease

Chen Li

10/07/18

1 item of Media coverage

Press/Media: Research

Congratulations to our successful NHMRC Fellows

Chen Li

23/10/17

1 item of Media coverage

Press/Media: Research