Projects per year
Personal profile
Biography
Dr Chen Li completed his PhD with A/Prof Ashley Buckle and A/Prof Jiangning Song at the Department of Biochemistry and Molecular Biology and Monash Biomedicine Discovery Institute, Monash University in 2016, where he focused on developing bioinformatic algorithms and databases for analysing the relationship between protein structure, function and disease. After completing his PhD study, Chen moved to the laboratories of Prof Anthony Purcell and Prof Jian Li at the Monash Biomedicine Discovery Institute as a research bioinformatician, and have since extended his research into proteomics and immunopeptidomics.
Chen is now working in the Purcell Lab at Monash University as a CJ Martin Early Career Research Fellow supported by the Australian National Health and Medical Research Council (NHMRC). His research focuses on integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment.
Research interests
Systems Proteomics; Immunopeptidomics; Cancer; Personalised Medicine; Bioinformatics
Education/Academic qualification
Bioinformatics, PhD, MONASH UNIVERSITY
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Projects 2017 2022
Investigation and prediction of colorectal cancer neoepitopes and their immunological responses
1/03/17 → 29/12/17
Project: Research
Targeting outer membrane vesicles of Gram-negative ‘superbug’ Acinetobacter baumannii: A systems and computational approach
2/01/17 → 30/04/18
Project: Research
Research Output 2008 2019
3
Citations
(Scopus)
A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model
Sajic, T., Ciuffa, R., Lemos, V., Xu, P., Leone, V., Li, C., Williams, E. G., Makris, G., Banaei-Esfahani, A., Heikenwalder, M., Schoonjans, K. & Aebersold, R., 6 May 2019, In : Scientific Reports. 9, 1, 20 p., 6913.Research output: Contribution to journal › Article › Research › peer-review
Open Access
File
14
Citations
(Scopus)
Positive-unlabelled learning of glycosylation sites in the human proteome
Li, F., Zhang, Y., Purcell, A. W., Webb, G. I., Chou, K-C., Lithgow, T., Li, C. & Song, J., 6 Mar 2019, In : BMC Bioinformatics. 20, 1, 17 p., 112.Research output: Contribution to journal › Article › Research › peer-review
Open Access
File
3
Citations
(Scopus)
Response to Comment on "A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands"
Faridi, P., Li, C., Ramarathinam, S. H., Illing, P. T., Mifsud, N. A., Ayala, R., Song, J., Gearing, L. J., Croft, N. P. & Purcell, A. W., 16 Aug 2019, In : Science Immunology. 4, 38, 4 p., eaaw8457.Research output: Contribution to journal › Article › Other › peer-review
Open Access
SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
Wang, X., Li, C., Li, F., Sharma, V. S., Song, J. & Webb, G. I., 21 Nov 2019, (Accepted/In press) In : BMC Bioinformatics. 12 p., 602.Research output: Contribution to journal › Article › Research › peer-review
Open Access
File
12
Citations
(Scopus)
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
Li, F., Wang, Y., Li, C., Marquez-Lago, T. T., Leier, A., Rawlings, N. D., Haffari, G., Revote, J., Akutsu, T., Chou, K-C., Purcell, A. W., Pike, R. N., Webb, G. I., Smith, A. I., Lithgow, T., Daly, R. J., Whisstock, J. C. & Song, J., 27 Nov 2019, In : Briefings in Bioinformatics. 20, 6, p. 2150-2166 17 p.Research output: Contribution to journal › Article › Research › peer-review
Prizes
2017 Hans Neurath Outstanding Promise Travel Award
Chen Li (Recipient), 2017
Prize: Prize (including medals and awards)
Harnessing systems biology by integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment
Chen Li (Recipient), 2018
Prize: Competitive Fellowships
HUPO 2019 Early Career Research (ECR) Travel Award
Chen Li (Recipient), 27 Jul 2019
Prize: Prize (including medals and awards)
Activities 2014 2017
Briefings in Bioinformatics (Journal)
Chen Li (Peer reviewer)2017 → …
Activity: Publication peer-review and editorial work types › Peer review responsibility
PLoS ONE (Journal)
Chen Li (Peer reviewer)2016 → …
Activity: Publication peer-review and editorial work types › Peer review responsibility
International Journal of Antimicrobial Agents (Journal)
Chen Li (Peer reviewer)2016 → …
Activity: Publication peer-review and editorial work types › Peer review responsibility
Briefly introducing the laboratories and their research works.
Chen Li (Contributor)14 Nov 2016
Activity: Community Talks, Presentations, Exhibitions and Events › Public event
BMC Bioinformatics (Journal)
Chen Li (Peer reviewer)2016 → …
Activity: Publication peer-review and editorial work types › Peer review responsibility
Press / Media
Our immune system splices together “Frankenstein Proteins”
2/11/18
1 item of Media coverage
Press/Media: Research
Bioinformatics tool to unearth new pointers to disease
10/07/18
1 item of Media coverage
Press/Media: Research
Congratulations to our successful NHMRC Fellows
23/10/17
1 item of Media coverage
Press/Media: Research