Projects per year
Personal profile
Biography
Dr Chen Li completed his PhD with A/Prof Ashley Buckle and A/Prof Jiangning Song at the Department of Biochemistry and Molecular Biology and Monash Biomedicine Discovery Institute, Monash University in 2016, where he focused on developing bioinformatic algorithms and databases for analysing the relationship between protein structure, function and disease. After completing his PhD study, Chen moved to the laboratories of Prof Anthony Purcell and Prof Jian Li at the Monash Biomedicine Discovery Institute as a research bioinformatician, and have since extended his research into proteomics and immunopeptidomics.
Chen is now working in the Purcell Lab at Monash University as a research bioinformatician. His research focuses on systems and computational immunopeptidomics/proteomics, and personalized medicine.
Research interests
Systems Proteomics; Immunopeptidomics; Cancer; Personalised Medicine; Bioinformatics
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Bioinformatics, PhD, MONASH UNIVERSITY
External positions
Visiting NHMRC CJ Martin Fellow, ETH Zurich
Mar 2018 → Feb 2020
Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Projects
- 2 Finished
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Investigation and prediction of colorectal cancer neoepitopes and their immunological responses
1/03/17 → 29/12/17
Project: Research
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Targeting outer membrane vesicles of Gram-negative ‘superbug’ Acinetobacter baumannii: A systems and computational approach
2/01/17 → 30/04/18
Project: Research
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Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction
Zhang, M., Jia, C., Li, F., Li, C., Zhu, Y., Akutsu, T., Webb, G., Zou, Q., Coin, L. J. M. & Song, J., Mar 2022, In: Briefings in Bioinformatics. 23, 2, 25 p., bbab551.Research output: Contribution to journal › Review Article › Research › peer-review
2 Citations (Scopus) -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets
Chen, Z., Liu, X., Zhao, P., Li, C., Wang, Y., Li, F., Akutsu, T., Bain, C., Gasser, R. B., Li, J., Yang, Z., Gao, X., Kurgan, L. & Song, J., 7 May 2022, (Accepted/In press) In: Nucleic Acids Research. 14 p., gkac351.Research output: Contribution to journal › Article › Research › peer-review
Open Access -
MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- To Large-Scale Immunopeptidome Datasets
Kovalchik, K. A., Ma, Q., Wessling, L., Saab, F., Duquette, J. D., Kubiniok, P., Hamelin, D. J., Faridi, P., Li, C., Purcell, A. W., Jang, A., Paramithiotis, E., Tognetti, M., Reiter, L., Bruderer, R., Lanoix, J., Bonneil, É., Courcelles, M., Thibault, P., Caron, E. & 1 others, , Jan 2022, In: Molecular & Cellular Proteomics. 21, 1, 15 p., 100178.Research output: Contribution to journal › Article › Research › peer-review
Open Access3 Citations (Scopus) -
Positive-unlabeled learning in bioinformatics and computational biology: A brief review
Li, F., Dong, S., Leier, A., Han, M., Guo, X., Xu, J., Wang, X., Pan, S., Jia, C., Zhang, Y., Webb, G., Coin, L. J. M., Li, C. & Song, J., Jan 2022, In: Briefings in Bioinformatics. 23, 1, 13 p., bbab461.Research output: Contribution to journal › Review Article › Research › peer-review
3 Citations (Scopus) -
ggVolcanoR: A Shiny app for customizable visualization of differential expression datasets
Mullan, K. A., Bramberger, L. M., Munday, P. R., Goncalves, G., Revote, J., Mifsud, N. A., Illing, P. T., Anderson, A., Kwan, P., Purcell, A. W. & Li, C., Jan 2021, In: Computational and Structural Biotechnology Journal. 19, p. 5735-5740 6 p.Research output: Contribution to journal › Article › Research › peer-review
Open Access
Prizes
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2017 Hans Neurath Outstanding Promise Travel Award
Li, Chen (Recipient), 2017
Prize: Prize (including medals and awards)
-
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FAOBMB Young Scientist Prorgam Award
Li, Chen (Recipient), Oct 2021
Prize: Prize (including medals and awards)
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Harnessing systems biology by integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment
Li, Chen (Recipient), 2018
Prize: Competitive Fellowships
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HUPO 2019 Early Career Research (ECR) Travel Award
Li, Chen (Recipient), 27 Jul 2019
Prize: Prize (including medals and awards)
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Briefings in Bioinformatics (Journal)
Chen Li (Peer reviewer)
2017 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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Molecular Genetics and Genomics (Journal)
Chen Li (Peer reviewer)
2016 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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BMC Bioinformatics (Journal)
Chen Li (Peer reviewer)
2016 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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PLoS ONE (Journal)
Chen Li (Peer reviewer)
2016 → …Activity: Publication peer-review and editorial work types › Peer review responsibility
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University of Technology Sydney
Chen Li (Visiting researcher)
6 Jun 2016Activity: Visiting an external institution types › Visiting an external academic institution
Press / Media
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Our immune system splices together “Frankenstein Proteins”
2/11/18
1 item of Media coverage
Press/Media: Research
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Bioinformatics tool to unearth new pointers to disease
10/07/18
1 item of Media coverage
Press/Media: Research
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Congratulations to our successful NHMRC Fellows
23/10/17
1 item of Media coverage
Press/Media: Research