Projects per year
Personal profile
Biography
Arun Konagurthu is an academic (Level C) at Monash University. He is currently the Director of the undergraduate Bachelor of Computer Science degree offered by the Faculty of Information Technology. Between 2011-2013, he held a Larkins Fellowship at this faculty. His primary research area is Computational Biology and Bioinformatics.
His academic home page is maintained at: http://lcb.infotech.monash.edu.au/~karun
His research lab page is maintained at: http://lcb.infotech.monash.edu.au
Monash teaching commitment
Dr Arun Konagurthu has experience as the Chief Examiner for the following units in the Faculty of IT:
- FIT3155 Advanced data structures and algorithms
- FIT2004 Algorithms and data structures
- FIT3139 Computational science
Arun has experience as the Lecturer for the following units in the Faculty of IT:
- FIT3155 Advanced data structures and algorithms
- FIT2004 Algorithms and data structures
- FIT3139 Computational science
- FIT4012 Advanced topics in computational science
Research area keywords
- Bioinformatics
- Computational Biology
- Algorithms
- Statistical Machine Learning
- Information Theory
Projects
- 1 Finished
Next-generation Protein Structural comparison using Information Theory
Konagurthu, A., Garcia De La Banda, M., Stuckey, P. & Lesk, A.
4/02/15 → 14/08/19
Project: Research
Research Output
Information-theoretic inference of an optimal dictionary of protein supersecondary structures
Konagurthu, A. S., Subramanian, R., Allison, L., Abramson, D., de la Banda, M. G., Stuckey, P. J. & Lesk, A. M., 2019, Protein Supersecondary Structures: Methods and Protocols. E. Kister, A. (ed.). 2nd ed. New York NY USA: Springer, p. 123-131 9 p. (Methods in molecular biology (Clifton, N.J.); vol. 1958).Research output: Chapter in Book/Report/Conference proceeding › Chapter (Book) › Research › peer-review
Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors
Sumanaweera, D., Allison, L. & Konagurthu, A., 5 Jul 2019, In : Bioinformatics. 35, 14, p. i360-i369 10 p., btz368.Research output: Contribution to journal › Article › Research › peer-review
Open Access
File
The bits between proteins
Sumanaweera, D., Allison, L. & Konagurthu, A. S., 27 Mar 2018, Proceedings: DCC 2018 - 2018 Data Compression Conference. Bilgin, A., Marcellin, M. W., Serra-Sagrista, J. & Storer, J. A. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, p. 177-186 10 p. (Data Compression Conference Proceedings; vol. 2018-March).Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
1
Citation
(Scopus)
Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes
Subramanian, R., Allison, L., Stuckey, P. J., de la Banda, M. G., Abramson, D., Lesk, A. M. & Konagurthu, A. S., 8 May 2017, Proceedings - DCC 2017, 2017 Data Compression Conference: 4 - 7 April 2017, Snowbird, Utah, USA. Bilgin, A., Marcellin, M. W., Serra-Sagrista, J. & Storer, J. A. (eds.). Piscataway, NJ: IEEE, Institute of Electrical and Electronics Engineers, p. 340-349 10 p. 7923707. (Data Compression Conference. Proceedings).Research output: Chapter in Book/Report/Conference proceeding › Conference Paper › Research › peer-review
2
Citations
(Scopus)
Statistical inference of protein structural alignments using information and compression
Collier, J. H., Allison, L., Lesk, A. M., Stuckey, P. J., Garcia De La Banda, M. & Konagurthu, A. S., 1 Apr 2017, In : Bioinformatics. 33, 7, p. 1005-1013 9 p.Research output: Contribution to journal › Article › Research › peer-review
3
Citations
(Scopus)
Prizes
Larkins Fellow - Faculty of Information Technology, Monash University
Arun Konagurthu (Recipient), 1 Jan 2011
Prize: Competitive Fellowships
Activities
Course Director - Bachelor of Computer Science - Faculty of Information Technology, Monash University
Arun Konagurthu (Chair/ Co-Chair)1 Jan 2016
Activity: External Academic Engagement › Professional association or peak discipline body
Member - Faculty Research Committee - Faculty of Information Technology, Monash University
Arun Konagurthu (Member)1 Jan 2016
Activity: External Academic Engagement › Professional association or peak discipline body
Member - Undergraduate Programs Committee - Faculty of Information Technology, Monash University
Arun Konagurthu (Member)1 Jan 2016
Activity: External Academic Engagement › Committees and working groups
Past Alternate HDR coordinator for Faculty of IT - Monash University
Arun Konagurthu (Executive Member)28 Apr 2013
Activity: External Academic Engagement › Professional association or peak discipline body
Past FIT representative on Faculty of Science Board of Studies - Monash University
Arun Konagurthu (Executive Member)22 Jun 2012
Activity: External Academic Engagement › Professional association or peak discipline body