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Research Output 1978 2019

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2019

Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells

Nakanishi, M., Mitchell, R. R., Benoit, Y. D., Orlando, L., Reid, J. C., Shimada, K., Davidson, K. C., Shapovalova, Z., Collins, T. J., Nagy, A. & Bhatia, M., 2 May 2019, In : Cell. 177, 4, p. 910-924 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2018

Administration of gonadotropins for superovulation in mice

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Jan 2018, In : Cold Spring Harbor Protocols. 2018, 1, p. 24-27 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Combined delivery of chondroitinase ABC and human induced pluripotent stem cell-derived neuroepithelial cells promote tissue repair in an animal model of spinal cord injury

Führmann, T., Anandakumaran, P. N., Payne, S. L., Pakulska, M. M., Varga, B. V., Nagy, A., Tator, C. & Shoichet, M. S., 1 Feb 2018, In : Biomedical Materials (Bristol). 13, 2, 13 p., 024103.

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In Vitro Maturation of Human iPSC-Derived Neuroepithelial Cells Influences Transplant Survival in the Stroke-Injured Rat Brain

Payne, S. L., Anandakumaran, P. N., Varga, B. V., Morshead, C. M., Nagy, A. & Shoichet, M. S., 1 Feb 2018, In : Tissue Engineering - Part A. 24, 3-4, p. 351-360 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Subcutaneous injection of pluripotent stem cells in mice

Nagy, K. V. & Nagy, A., 1 Apr 2018, In : Cold Spring Harbor Protocols. 2018, 4, p. 251-252 2 p.

Research output: Contribution to journalArticleOtherpeer-review

Visualization of fluorescent protein expression in whole-mount postimplantation-stage mouse embryos

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Mar 2018, In : Cold Spring Harbor Protocols. 2018, 3, p. 171-172 2 p.

Research output: Contribution to journalArticleOtherpeer-review

2017

Assessing the Safety of Human Pluripotent Stem Cells and Their Derivatives for Clinical Applications

Andrews, P. W., Ben-David, U., Benvenisty, N., Coffey, P., Eggan, K., Knowles, B. B., Nagy, A., Pera, M., Reubinoff, B., Rugg-Gunn, P. J. & Stacey, G. N., 11 Jul 2017, In : Stem Cell Reports. 9, 1, 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Generation of Induced Progenitor-like Cells from Mature Epithelial Cells Using Interrupted Reprogramming

Guo, L., Karoubi, G., Duchesneau, P., Shutova, M. V., Sung, H. K., Tonge, P., Bear, C., Rogers, I., Nagy, A. & Waddell, T. K., 12 Dec 2017, In : Stem Cell Reports. 9, 6, p. 1780-1795 16 p.

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Integrating piggyBac transposon transgenes into mouse fibroblasts by electroporation

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 831-833 3 p.

Research output: Contribution to journalArticleOtherpeer-review

Integrating piggyBac transposon transgenes into mouse fibroblasts using chemical methods

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 834-836 3 p.

Research output: Contribution to journalArticleOtherpeer-review

Intermittent fasting promotes adipose thermogenesis and metabolic homeostasis via VEGF-mediated alternative activation of macrophage

Kim, K. H., Kim, Y. H., Son, J. E., Lee, J. H., Kim, S., Choe, M. S., Moon, J. H., Zhong, J., Fu, K., Lenglin, F., Yoo, J. A., Bilan, P. J., Klip, A., Nagy, A., Kim, J. R., Park, J. G., Hussein, S. M. I., Doh, K. O., Hui, C. C. & Sung, H. K., 1 Nov 2017, In : Cell Research. 27, 11, p. 1309-1326 18 p.

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Isolation, propagation, and differentiation of radial Glia-like neural progenitor cells in adherent cultures

Varga, B. & Nagy, A., 1 Sep 2017, In : Cold Spring Harbor Protocols. 2017, 9, p. 706-712 7 p.

Research output: Contribution to journalArticleOtherpeer-review

Nestin contributes to skeletal muscle homeostasis and regeneration

Lindqvist, J., Torvaldson, E., Gullmets, J., Karvonen, H., Nagy, A., Taimen, P. & Eriksson, J. E., 1 Sep 2017, In : Journal of Cell Science. 130, 17, p. 2833-2842 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Preparation of DNA from embryonic stem cells or other cultured cells

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Dec 2017, In : Cold Spring Harbor Protocols. 2017, 12, p. 1016-1018 3 p.

Research output: Contribution to journalArticleOtherpeer-review

Reprogramming mouse fibroblasts with piggyBac transposons

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 827-830 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Shipment of live preimplantation-stage mouse embryos

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 May 2017, In : Cold Spring Harbor Protocols. 2017, 5, p. 387-390 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Testing serum batches for mouse embryonic stem cell culture

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Dec 2017, In : Cold Spring Harbor Protocols. 2017, 12, p. 988-991 4 p.

Research output: Contribution to journalArticleOtherpeer-review

The production of pluripotent stem cells from mouse Amniotic Fluid cells using a transposon system

Bertin, E., Piccoli, M., Franzin, C., Nagy, A., Mileikovsky, M., De Coppi, P. & Pozzobon, M., 28 Feb 2017, In : Journal of Visualized Experiments. 2017, 120, e54598.

Research output: Contribution to journalArticleOtherpeer-review

VEGFR2 but not VEGFR3 governs integrity and remodeling of thyroid angiofollicular unit in normal state and during goitrogenesis

Jang, J. Y., Choi, S. Y., Park, I., Park, D. Y., Choe, K., Kim, P., Kim, Y. K., Lee, B. J., Hirashima, M., Kubota, Y., Park, J. W., Cheng, S. Y., Nagy, A., Park, Y. J., Alitalo, K., Shong, M. & Koh, G. Y., 1 Jun 2017, In : EMBO Molecular Medicine. 9, 6, p. 750-769 20 p.

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2016

An abbreviated protocol for in vitro generation of functional human embryonic stem cell-derived beta-like cells

Massumi, M., Pourasgari, F., Nalla, A., Batchuluun, B., Nagy, K., Neely, E., Gull, R., Nagy, A. & Wheeler, M. B., 1 Oct 2016, In : PLoS ONE. 11, 10, 24 p., e0164457.

Research output: Contribution to journalArticleOtherpeer-review

Antisenescence effect of mouse embryonic stem cell conditioned medium through a PDGF/FGF pathway

Bae, Y. U., Choi, J. H., Nagy, A., Sung, H. K. & Kim, J. R., 1 Mar 2016, In : FASEB Journal. 30, 3, p. 1276-1286 11 p.

Research output: Contribution to journalArticleResearchpeer-review

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Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis

Luna-Zurita, L., Stirnimann, C. U., Glatt, S., Kaynak, B. L., Thomas, S., Baudin, F., Samee, M. A. H., He, D., Small, E. M., Mileikovsky, M., Nagy, A., Holloway, A. K., Pollard, K. S., Müller, C. W. & Bruneau, B. G., 25 Feb 2016, In : Cell. 164, 5, p. 999-1014 16 p.

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Differentiating mouse embryonic stem cells into embryoid bodies by hanging-drop cultures

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Dec 2016, In : Cold Spring Harbor Protocols. 2016, 12, p. 1073-1076 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Generation, characterization, and multilineage potency of mesenchymal-like progenitors derived from equine induced pluripotent stem cells

Lepage, S. I., Nagy, K., Sung, H. K., Kandel, R. A., Nagy, A. & Koch, T. G., Jan 2016, In : Stem Cells and Development. 25, 1, p. 80-89 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Genome wide conditional mouse knockout resources

Kaloff, C., Anastassiadis, K., Ayadi, A., Baldock, R., Beig, J., Birling, M. C., Bradley, A., Brown, S. D. M., Bürger, A., Bushell, W., Chiani, F., Collins, F. S., Doe, B., Eppig, J. T., Finnell, R. H., Fletcher, J. C., Flicek, P., El Fray, M., Friedel, R. H., Gambadoro, A. & 46 others, Gates, H., Hansen, J., Herault, Y., Hicks, G., Hörlein, A., Hrabé de Angelis, M., Iyer, V. J., de Jong, P. J., Koscielny, G., Kühn, R., Liu, P., Lloyd, K. C. K., Lopez, R. G., Marschall, J. S., Martínez, S., McKerlie, C., Meehan, T., von Melchner, H., Moore, M., Murray, S. A., Nagy, A., Nutter, L. M. J., Pavlovic, G., Pombero, A., Prosser, H., Ramirez-Solis, R., Ringwald, M., Rosen, B., Rosenthal, N., Rossant, J., Ruiz Noppinger, P., Ryder, E., Skarnes, W. C., Schick, J., Schnütgen, F., Schofield, P. E., Seisenberger, C., Selloum, M., Smedley, D. P., Simpson, E. M., Stewart, A. F., Teboul, L., Tocchini Valentini, G. P., Valenzuela, D. M., West, A. P. & Wurst, W., 2016, In : Drug Discovery Today: Disease Models. 20, p. 3-12 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Injectable hydrogel promotes early survival of induced pluripotent stem cell-derived oligodendrocytes and attenuates longterm teratoma formation in a spinal cord injury model

Führmann, T., Tam, R. Y., Ballarin, B., Coles, B., Elliott Donaghue, I., van der Kooy, D., Nagy, A., Tator, C. H., Morshead, C. M. & Shoichet, M. S., 1 Mar 2016, In : Biomaterials. 83, p. 23-36 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Irx3 is required for postnatal maturation of the mouse ventricular conduction system

Kim, K. H., Rosen, A., Hussein, S. M. I., Puviindran, V., Korogyi, A. S., Chiarello, C., Nagy, A., Hui, C. C. & Backx, P. H., 20 Jan 2016, In : Scientific Reports. 6, 14 p., 19197.

Research output: Contribution to journalArticleResearchpeer-review

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Selecting female mice in estrus and checking plugs

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Aug 2016, In : Cold Spring Harbor Protocols. 2016, 8, p. 729-731 3 p.

Research output: Contribution to journalArticleOtherpeer-review

2015

Adult Neural Stem Cells from the Subventricular Zone Give Rise to Reactive Astrocytes in the Cortex after Stroke

Faiz, M., Sachewsky, N., Gascón, S., Bang, K. W. A., Morshead, C. M. & Nagy, A., 5 Nov 2015, In : Cell Stem Cell. 17, 5, p. 624-634 11 p.

Research output: Contribution to journalArticleResearchpeer-review

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CD24 tracks divergent pluripotent states in mouse and human cells

Shakiba, N., White, C. A., Lipsitz, Y. Y., Yachie-Kinoshita, A., Tonge, P. D., Hussein, S. M. I., Puri, M. C., Elbaz, J., Morrissey-Scoot, J., Li, M., Munoz, J., Benevento, M., Rogers, I. M., Hanna, J. H., Heck, A. J. R., Wollscheid, B., Nagy, A. & Zandstra, P. W., 16 Jun 2015, In : Nature Communications. 6, 11 p., 7329.

Research output: Contribution to journalArticleResearchpeer-review

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Fluctuations in histone H4 isoforms during cellular reprogramming monitored by middle-down proteomics

Benevento, M., Tonge, P. D., Puri, M. C., Nagy, A., Heck, A. J. R. & Munoz, J., 1 Sep 2015, In : Proteomics. 15, 18, p. 3219-3231 13 p.

Research output: Contribution to journalArticleResearchpeer-review

KLK5 Inactivation Reverses Cutaneous Hallmarks of Netherton Syndrome

Furio, L., Pampalakis, G., Michael, I. P., Nagy, A., Sotiropoulou, G. & Hovnanian, A., 21 Sep 2015, In : PLoS Genetics. 11, 9, 20 p., e1005389.

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Lin28 promotes the proliferative capacity of neural progenitor cells in brain development

Yang, M., Yang, S. L., Herrlinger, S., Liang, C., Dzieciatkowska, M., Hansen, K. C., Desai, R., Nagy, A., Niswander, L., Moss, E. G. & Chen, J. F., 2015, In : Development (Cambridge). 142, 9, p. 1616-1627 12 p.

Research output: Contribution to journalArticleResearchpeer-review

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Modeling correction of severe urea cycle defects in the growing murine liver using a hybrid recombinant adeno-associated virus/piggyBac transposase gene delivery system

Cunningham, S. C., Siew, S. M., Hallwirth, C. V., Bolitho, C., Sasaki, N., Garg, G., Michael, I. P., Hetherington, N. A., Carpenter, K., de Alencastro, G., Nagy, A. & Alexander, I. E., 1 Aug 2015, In : Hepatology. 62, 2, p. 417-428 12 p.

Research output: Contribution to journalArticleResearchpeer-review

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Points to consider in the development of seed stocks of pluripotent stem cells for clinical applications: International Stem Cell Banking Initiative (ISCBI)

Andrews, P. W., Baker, D., Benvinisty, N., Miranda, B., Bruce, K., Brüstle, O., Choi, Y. M., Choi, Y. M., Crook, J. M., De Sousa, P. A., Dvorak, P., Freund, C., Firpo, M., Furue, M. K., Gokhale, P., Ha, H. Y., Han, E., Haupt, S., Healy, L., Hei, D. J. & 45 others, Hovatta, O., Hunt, C., Hwang, S. M., Inamdar, M. S., Isasi, R. M., Jaconi, M., Jekerle, V., Kamthorn, P., Kibbey, M. C., Knezevic, I., Knowles, B. B., Koo, S. K., Laabi, Y., Leopoldo, L., Liu, P., Lomax, G. P., Loring, J. F., Ludwig, T. E., Montgomery, K., Mummery, C., Nagy, A., Nakamura, Y., Nakatsuji, N., Oh, S., Oh, S. K., Otonkoski, T., Pera, M., Peschanski, M., Pranke, P., Rajala, K. M., Rao, M., Ruttachuk, R., Reubinoff, B., Ricco, L., Rooke, H., Sipp, D., Stacey, G. N., Suemori, H., Takahashi, T. A., Takada, K., Talib, S., Tannenbaum, S., Yuan, B. Z., Zeng, F. & Zhou, Q., 1 Mar 2015, In : Regenerative Medicine. 10, 44 p.

Research output: Contribution to journalArticleOtherpeer-review

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance

Madisen, L., Garner, A. R., Shimaoka, D., Chuong, A. S., Klapoetke, N. C., Li, L., van der Bourg, A., Niino, Y., Egolf, L., Monetti, C., Gu, H., Mills, M., Cheng, A., Tasic, B., Nguyen, T. N., Sunkin, S. M., Benucci, A., Nagy, A., Miyawaki, A., Helmchen, F. & 6 others, Empson, R. M., Knöpfel, T., Boyden, E. S., Reid, R. C., Carandini, M. & Zeng, H., 4 Mar 2015, In : Neuron. 85, 5, p. 942-958 17 p.

Research output: Contribution to journalArticleResearchpeer-review

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Transplantation of induced pluripotent stem cell-derived neural stem cells mediate functional recovery following thoracic spinal cord injury through remyelination of axons

Salewski, R. P., Mitchell, R. A., Li, L., Shen, C., Milekovskaia, M., Nagy, A. & Fehlingsa, M. G., 1 Jul 2015, In : Stem Cells Translational Medicine. 4, 7, p. 743-754 12 p.

Research output: Contribution to journalArticleResearchpeer-review

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2014

An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator

Lee, D. S., Shin, J. Y., Tonge, P. D., Puri, M. C., Lee, S., Park, H., Lee, W. C., Hussein, S. M. I., Bleazard, T., Yun, J. Y., Kim, J., Li, M., Cloonan, N., Wood, D., Clancy, J. L., Mosbergen, R., Yi, J. H., Yang, K. S., Kim, H., Rhee, H. & 6 others, Wells, C. A., Preiss, T., Grimmond, S. M., Rogers, I. M., Nagy, A. & Seo, J. S., 10 Dec 2014, In : Nature Communications. 5, 10 p., 5619.

Research output: Contribution to journalArticleResearchpeer-review

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A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells

Huang, K., Shen, Y., Xue, Z., Bibikova, M., April, C., Liu, Z., Cheng, L., Nagy, A., Pellegrini, M., Fan, J. B. & Fan, G., 14 Jan 2014, In : Stem Cell Reports. 2, 1, p. 36-43 8 p.

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Divergent reprogramming routes lead to alternative stem-cell states

Tonge, P. D., Corso, A. J., Monetti, C., Hussein, S. M. I., Puri, M. C., Michael, I. P., Li, M., Lee, D. S., Mar, J. C., Cloonan, N., Wood, D. L., Gauthier, M. E., Korn, O., Clancy, J. L., Preiss, T., Grimmond, S. M., Shin, J. Y., Seo, J. S., Wells, C. A., Rogers, I. M. & 1 others, Nagy, A., 11 Dec 2014, In : Nature. 516, 7530, p. 192-197 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Genome-wide characterization of the routes to pluripotency

Hussein, S. M. I., Puri, M. C., Tonge, P. D., Benevento, M., Corso, A. J., Clancy, J. L., Mosbergen, R., Li, M., Lee, D. S., Cloonan, N., Wood, D. L. A., Munoz, J., Middleton, R., Korn, O., Patel, H. R., White, C. A., Shin, J. Y., Gauthier, M. E., Cao, K. A. L., Kim, J. I. & 12 others, Mar, J. C., Shakiba, N., Ritchie, W., Rasko, J. E. J., Grimmond, S. M., Zandstra, P. W., Wells, C. A., Preiss, T., Seo, J. S., Heck, A. J. R., Rogers, I. M. & Nagy, A., 11 Dec 2014, In : Nature. 516, 7530, p. 198-206 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Immune privilege of the CNS is not the consequence of limited antigen sampling

Harris, M. G., Hulseberg, P., Ling, C., Karman, J., Clarkson, B. D., Harding, J. S., Zhang, M., Sandor, A., Christensen, K., Nagy, A., Sandor, M. & Fabry, Z., 21 Mar 2014, In : Scientific Reports. 4, 10 p., 4422.

Research output: Contribution to journalArticleResearchpeer-review

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Ips cell-derived cardiogenicity is hindered by sustained integration of reprogramming transgenes

Martinez-Fernandez, A., Nelson, T. J., Reyes, S., Alekseev, A. E., Secreto, F., Perez-Terzic, C., Beraldi, R., Sung, H. K., Nagy, A. & Terzic, A., 1 Oct 2014, In : Circulation: Cardiovascular Genetics. 7, 5, p. 667-676 10 p.

Research output: Contribution to journalArticleResearchpeer-review

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Local acting Sticky-trap inhibits vascular endothelial growth factor dependent pathological angiogenesis in the eye

Michael, I. P., Westenskow, P. D., Hacibekiroglu, S., Greenwald, A. C., Ballios, B. G., Kurihara, T., Li, Z., Warren, C. M., Zhang, P., Aguilar, E., Donaldson, L., Marchetti, V., Baba, T., Hussein, S. M., Sung, H. K., Iruela-Arispe, M. L., Rini, J. M., Van der Kooy, D., Friedlander, M. & Nagy, A., 4 Apr 2014, In : EMBO Molecular Medicine. 6, 5, p. 604-623 20 p.

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Local BMP-SMAD1 signaling increases LIF receptor-dependent STAT3 responsiveness and primed-to-naive mouse pluripotent stem cell conversion frequency

Onishi, K., Tonge, P. D., Nagy, A. & Zandstra, P. W., 8 Jul 2014, In : Stem Cell Reports. 3, 1, p. 156-168 13 p.

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Obesity-associated variants within FTO form long-range functional connections with IRX3

Smemo, S., Tena, J. J., Kim, K. H., Gamazon, E. R., Sakabe, N. J., Gómez-Marín, C., Aneas, I., Credidio, F. L., Sobreira, D. R., Wasserman, N. F., Lee, J. H., Puviindran, V., Tam, D., Shen, M., Son, J. E., Vakili, N. A., Sung, H. K., Naranjo, S., Acemel, R. D., Manzanares, M. & 5 others, Nagy, A., Cox, N. J., Hui, C. C., Gomez-Skarmeta, J. L. & Nóbrega, M. A., 12 Mar 2014, In : Nature. 507, 7492, p. 371-375 5 p.

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Proteome adaptation in cell reprogramming proceeds via distinct transcriptional networks

Benevento, M., Tonge, P. D., Puri, M. C., Hussein, S. M. I., Cloonan, N., Wood, D. L., Grimmond, S. M., Nagy, A., Munoz, J. & Heck, A. J. R., 10 Dec 2014, In : Nature Communications. 5, 11 p., 5613.

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Small RNA changes en route to distinct cellular states of induced pluripotency

Clancy, J. L., Patel, H. R., Hussein, S. M. I., Tonge, P. D., Cloonan, N., Corso, A. J., Li, M., Lee, D. S., Shin, J. Y., Wong, J. J. L., Bailey, C. G., Benevento, M., Munoz, J., Chuah, A., Wood, D., Rasko, J. E. J., Heck, A. J. R., Grimmond, S. M., Rogers, I. M., Seo, J. S. & 4 others, Wells, C. A., Puri, M. C., Nagy, A. & Preiss, T., 10 Dec 2014, In : Nature Communications. 5, 9 p., 5522.

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Trophoblast-specific reduction of VEGFA alters placental gene expression and maternal cardiovascular function in mice

Li, H., Qu, D., McDonald, A., Isaac, S. M., Whiteley, K. J., Sung, H. K., Nagy, A. & Lee Adamson, S., 1 Oct 2014, In : Biology of Reproduction. 91, 4, 12 p., 87.

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2013

Adipose vascular endothelial growth factor regulates metabolic homeostasis through angiogenesis

Sung, H. K., Doh, K. O., Son, J. E., Park, J. G., Bae, Y., Choi, S., Nelson, S. M. L., Cowling, R., Nagy, K., Michael, I. P., Koh, G. Y., Adamson, S. L., Pawson, T. & Nagy, A., 8 Jan 2013, In : Cell Metabolism. 17, 1, p. 61-72 12 p.

Research output: Contribution to journalArticleResearchpeer-review