Research Output 1986 2018

2018

Best practice data life cycle approaches for the life sciences

Griffin, P. C., Khadake, J., LeMay, K. S., Lewis, S. E., Orchard, S., Pask, A., Pope, B., Roessner, U., Russell, K., Seemann, T., Treloar, A., Tyagi, S., Christiansen, J. H., Dayalan, S., Gladman, S., Hangartner, S. B., Hayden, H. L., Ho, W. W. H., Keeble-Gagnère, G., Korhonen, P. K. & 7 othersNeish, P., Prestes, P. R., Richardson, M. F., Watson-Haigh, N. S., Wyres, K. L., Young, N. D. & Schneider, M. V., 4 Jun 2018, In : F1000Research. 6, 22 p., 1618.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Bubbles on Mars: 360° play and performance on EVA

Jane Pell, S., Barnes, D. G. & Mueller, F., 1 Jan 2018, In : Proceedings of the International Astronautical Congress, IAC. 2018-October

Research output: Contribution to journalConference articleOther

Combining images and anatomical knowledge to improve automated vein segmentation in MRI

Ward, P. G. D., Ferris, N. J., Raniga, P., Dowe, D. L., Ng, A. C. L., Barnes, D. G. & Egan, G. F., 2018, In : NeuroImage. 165, p. 294-605 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Joint registration and segmentation of xray images using generative adversarial networks

Mahapatra, D., Ge, Z., Sedai, S. & Chakravorty, R., 1 Jan 2018, Machine Learning in Medical Imaging: 9th International Workshop, MLMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings. Shi, Y., Suk, H-I. & Liu, M. (eds.). Cham Switzerland: Springer, Vol. 11046. p. 73-80 8 p. (Lecture Notes in Computer Science ; vol. 11046).

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

Learning Context Flexible Attention Model for Long-Term Visual Place Recognition

Chen, Z., Liu, L., Sa, I., Ge, Z. & Chli, M., 1 Oct 2018, In : IEEE Robotics and Automation Letters. 3, 4, p. 4015-4022 8 p., 8421024.

Research output: Contribution to journalArticleResearchpeer-review

2017

3D-stereoscopic immersive analytics projects at Monash University and University of Konstanz

Sommer, B., Barnes, D. G., Boyd, S., Chandler, T., Cordeil, M., Czauderna, T., Klapperstueck, M., Klein, K., Nguyen, T. D., Nim, H., Stephens, K., Vohl, D., Wang, S., Wilson, E., Zhu, Y., Li, J., McCormack, J., Marriott, K. & Schreiber, F., 2017, Stereoscopic Displays and Applications XXVIII (SD&A 2017): 30 January - 1 February 2017, Burlingame, California, USA, part of IS&T's International Symposium on Electronic Imaging: Science and Technology [Proceedings]. Springfield VA USA: Society for Imaging Science and Technology, p. 1-9 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference PaperOtherpeer-review

Four simple recommendations to encourage best practices in research software

Jiménez, R. C., Kuzak, M., Alhamdoosh, M., Barker, M., Batut, B., Borg, M., Capella-Gutierrez, S., Chue Hong, N., Cook, M., Corpas, M., Flannery, M., Garcia, L., Gelpí, J. L., Gladman, S., Goble, C., González Ferreiro, M., Gonzalez-Beltran, A., Griffin, P. C., Grüning, B., Hagberg, J. & 29 othersHolub, P., Hooft, R., Ison, J., Katz, D. S., Leskošek, B., López Gómez, F., Oliveira, L. J., Mellor, D., Mosbergen, R., Mulder, N., Perez-Riverol, Y., Pergl, R., Pichler, H., Pope, B., Sanz, F., Schneider, M. V., Stodden, V., Suchecki, R., Svobodová Vařeková, R., Talvik, H. A., Todorov, I., Treloar, A., Tyagi, S., van Gompel, M., Vaughan, D., Via, A., Wang, X., Watson-Haigh, N. S. & Crouch, S., 2017, In : F1000Research. 6, 13 p., 876.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Improved quantification of cerebral vein oxygenation using partial volume correction

Ward, P. G. D., Fan, A. P., Raniga, P., Barnes, D. G., Dowe, D. L., Ng, A. C. L. & Egan, G. F., 27 Feb 2017, In : Frontiers in Neuroscience. 11, 12 p., 89.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Vein segmentation using shape-based Markov random fields

Ward, P. G. D., Ferris, N. J., Raniga, P., Ng, A. C. L., Barnes, D. G., Dowe, D. L. & Egan, G. F., 15 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, Institute of Electrical and Electronics Engineers, p. 1133-1136 4 p. 7950716

Research output: Chapter in Book/Report/Conference proceedingConference PaperOtherpeer-review

2016

A window for plate tectonics in terrestrial planet evolution?

O'Neill, C., Lenardic, A., Weller, M., Moresi, L., Quenette, S. & Zhang, S., 1 Jun 2016, In : Physics of the Earth and Planetary Interiors. 255, p. 80-92 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Collaborative visual analytics of radio surveys in the Big Data era

Vohl, D., Fluke, C. J., Hassan, A. H., Barnes, D. G. & Kilborn, V. A., 2016, In : Proceedings of the International Astronomical Union. 12, S325, p. 311-315 5 p.

Research output: Contribution to journalArticleOtherpeer-review

Group cohesion in online white supremacist communities: what external events make these groups stronger?

Bliuc, A-M., Betts, J., Faulkner, N., Vergani, M., Iqbal, M. & Chow, R. J., 2016, Annual Conference of the Society of Australasian Social Psychologists 2016. Society of Australasian Social Psychologists

Research output: Chapter in Book/Report/Conference proceedingConference PaperOther

Group cohesion in online white supremacist communities – integrating social network and computerised linguistic analyses

Bliuc, A-M., Betts, J., Faulkner, N., Vergani, M., Chow, R. J. & Iqbal, M., 2016, VOX-Pol Mid-Project Conference 2016.

Research output: Chapter in Book/Report/Conference proceedingConference PaperOther

Large-scale comparative visualisation of sets of multidimensional data

Vohl, D., Barnes, D. G., Fluke, C. J., Poudel, G., Georgiou-Karistianis, N., Hassan, A. H., Benovitski, Y., Wong, T. H., Kaluza, O., Nguyen, T. D. & Bonnington, C. P., 2016, In : PeerJ Computer Science. 2, 10, 36 p., e88.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Mapping venous metrics in a large cohort of healthy elderly individuals

Ward, P. G. D., Raniga, P., Ferris, N. J., Barnes, D. G., Dowe, D. L., Storey, E., Woods, R. L. & Egan, G. F., 2016.

Research output: Contribution to conferenceAbstractOther

Partial volume correction of quantitative susceptibility maps for oxygen extraction fraction measurements

Ward, P., Fan, A. P., Raniga, P., Barnes, D. G., Dowe, D. L. & Egan, G. F., 2016. 4 p.

Research output: Contribution to conferenceAbstractOther

Social cohesiveness in online white supremacist communities: a social network analysis identifying the role of external events

Bliuc, A-M., Betts, J., Faulkner, N., Vergani, M., Iqbal, M. & Chow, R. J., 2016, Annual Conference of the International Society of Political Psychology 2016. International Society of Political Psychology

Research output: Chapter in Book/Report/Conference proceedingConference PaperOther

Stereoscopic space map – semi-immersive configuration of 3D-stereoscopic tours in multi-display environments

Sommer, B., Hamacher, A., Kaluza, O., Czauderna, T., Klapperstueck, M., Biere, N., Civico, M., Thomas, B., Barnes, D. G. & Schreiber, F., 14 Feb 2016, Stereoscopic Displays and Applications XXVII (SD&A 2016): 15–17 February 2016, San Francisco, CA, USA, part of IS&T's International Symposium on Electronic Imaging: Science and Technology [Proceedings]. Springfield, VA: Society for Imaging Science and Technology, 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearch

Open Access
File
2015

Consistency of commonly applied vessel segmentation methods for magnetic resonance venography

Ward, P. G. D., Raniga, P., Ferris, N. J., Ng, A. C. L., Barnes, D. G., Dowe, D. L., Storey, E., Woods, R. L. & Egan, G. F., 2015, p. 3760. 1 p.

Research output: Contribution to conferenceAbstractOther

Data management challenges in analysis and synthesis in the ecosystem sciences

Specht, A., Guru, S., Houghton, L., Keniger, L., Driver, P., Ritchie, E. G., Lai, K. & Treloar, A. E., 2015, In : Science of the Total Environment. 534, 15, p. 144 - 158 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Design, implementation and operation of a multimodality research imaging informatics repository

Nguyen, T. D., Raniga, P., Barnes, D. G. & Egan, G. F., 2015, In : Health Information Science and Systems. 3, 1, 10 p., 56.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Enabling non-invasive vein imaging

Ward, P., Barnes, D. G., Dowe, D. L., Egan, G. F. & Raniga, P., 15 Oct 2015.

Research output: Contribution to conferencePosterOther

Examining the Reference Management Practices of Humanities and Social Science Postgraduate Students and Academics

Melles, A. & Unsworth, K., 2015, In : Australian Academic & Research Libraries. 46, 4, p. 249 - 274 26 p.

Research output: Contribution to journalArticleResearchpeer-review

Forearm range of motion in Australovenator wintonensis (Theropoda, Megaraptoridae)

White, M. A., Bell, P. R., Cook, A., Barnes, D. G., Tischler, T. R., Bassam, B. J. & Elliott, D. A., 2015, In : PLoS ONE. 10, 9, 20 p., e0137709.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Simulating the dynamic effect of land use and transport policies on the health of populations

McClure, R. J., Adriazola-Steil, C., Mulvihill, C. M., Fitzharris, M. P., Salmon, P. M., Bonnington, C. P. & Stevenson, M. R., 2015, In : American Journal of Public Health. 105, S2, p. 223 - 229 7 p.

Research output: Contribution to journalArticleResearchpeer-review

The Murchison Widefield Array correlator

Ord, S. M., Crosse, B., Emrich, D., Pallot, D., Wayth, R. B., Clark, M. A., Tremblay, S., Arcus, W., Barnes, D. G., Bell, M. E., Bernardi, G., Bhat, N. D. R., Bowman, J., Briggs, F. H., Bunton, J. D., Cappallo, R. J., Corey, B. E., Deshpande, A., deSouza, L., Ewall-Wice, A. & 30 othersFeng, L., Goeke, R. F., Greenhill, L. J., Hazelton, B. J., Herne, D. E., Hewitt, J. N., Hindson, L., Hurley-Walker, N., Jacobs, D., Johnston-Hollitt, M., Kaplan, D. L., Kasper, J. C., Kincaid, B. B., Koenig, R., Kratzenberg, E., Kudryavtseva, N., Lenc, E., Lonsdale, C. J., Lynch, M. J., McKinley, B., McWhirter, S. R., Mitchell, D. A., Morales, M. F., Morgan, E. H., Oberoi, D., Offringa, A. R., Pathikulangara, J., Pindor, B., Prabu, T. & Procopio, P., 2015, In : Publications of the Astronomical Society of Australia. 32, 006, p. 1 - 14 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Underworld-GT applied to Guangdong, a tool to explore the geothermal potential of the crust

Quenette, S., Xi, Y., Mansour, J., Moresi, L. & Abramson, D., 2015, In : Journal of Earth System Science. 26, 1, p. 78-88 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Venous segmentation using Gaussian mixture models and Markov random fields

Ward, P. G. D., Ferris, N. J., Ng, A. C. L., Barnes, D. G., Dowe, D. L., Egan, G. F. & Raniga, P., 2015, p. 3759. 1 p.

Research output: Contribution to conferenceAbstractOtherpeer-review

Who uses the digital data archive? An exploratory study of DANS

Borgman, C. L., Van de Sompel, H., Scharnhorst, A., van den Berg, H. & Treloar, A., 2015, Proceedings of the 78th Association for Information Science and Technology Annual Meeting (ASIS&T 2015): St. Louis, MO, USA; 6-10 November 2015. John Wiley & Sons, p. 1-4 4 p. (Proceedings of the Association for Information Science and Technology; vol. 52, no. 1). (Proceedings of the Association for Information Science and Technology).

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearch

Open Access
File
2014

A new 1.4 GHz radio continuum map of the sky south of declination +25 degree

Calabretta, M. R., Staveley-Smith, L. G. & Barnes, D. G., 2014, In : Publications of the Astronomical Society of Australia. 31, 1, p. 1 - 28 28 p.

Research output: Contribution to journalArticleResearchpeer-review

An interactive three dimensional approach to anatomical description-the jaw musculature of the Australian laughing kookaburra (Dacelo novaeguineae)

Quayle, M. R., Barnes, D., Kaluza, O. & McHenry, C. R., 2014, In : PeerJ. 2014, 1 (Art. No: e355), p. 1 - 18 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

A survey for transients and variables with the Murchison Widefield Array 32-tile prototype at 154 MHz

Bell, M., Murphy, T., Kaplan, D. L., Hancock, P. J., Gaensler, B. M., Banyer, J., Bannister, K., Trott, C., Hurley-Walker, N., Wayth, R. B., Macquart, J-P., Arcus, W., Barnes, D. G., Bernardi, G., Bowman, J. D., Briggs, F., Bunton, J., Cappallo, R., Corey, B. E., Deshpande, A. & 38 othersdeSouza, L., Emrich, D., Goeke, R. F., Greenhill, L., Hazelton, B. J., Herne, D. E., Hewitt, J. N., Johnston-Hollitt, M., Kasper, J. C., Kincaid, B. B., Koenig, R., Kratzenberg, E., Lonsdale, C. J., Lynch, M. J., McWhirter, S. R., Mitchell, D. A., Morales, M. F., Morgan, E. H., Oberoi, D., Ord, S. M., Pathikulangara, J., Prabu, T., Remillard, R. A., Rogers, A. E. E., Roshi, A. A., Salah, J. E., Sault, R. J., Udaya-Shankar, N., Srivani, K. S., Stevens, J., Subrahmanyan, R., Tingay, S. J., Waterson, M. F., Webster, R. L., Whitney, A. R., Williams, A., Williams, C. L. & Wyithe, J. S. B., 2014, In : Monthly Notices of the Royal Astronomical Society. 438, 1 (Art # stt2200), p. 352 - 367 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Building global infrastructure for data sharing and exchange through the research data alliance

Berman, F., Wilkinson, R. G. & Wood, J., 2014, In : D-Lib Magazine. 20, 1/2, p. 1 - 4 4 p.

Research output: Contribution to journalLetterOther

Clustering experiments on big transaction data for market segmentation

Singh, A. R., Xu, W. (ed.), Rumantir, G. W., Wang, F. (ed.), South, A. & Bethwaite, B., 2014, p. 1 - 7. 7 p.

Research output: Contribution to conferenceOtherOther

Contrast enhancement for magnetic resonance venography

Ward, P., Ng, A. C. L., Ferris, N., Dowe, D. L., Barnes, D. G., Egan, G. F. & Raniga, P., 30 Oct 2014.

Research output: Contribution to conferencePosterOther

Cost and benefit estimation of expert's mediation in an enterprise search

Wu, M., Turpin, A., Thom, J. A., Scholer, F. & Wilkinson, R. G., 2014, In : Association for Information Science and Technology. 65, 1, p. 146 - 163 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Development and Evaluation of an iPad App for Measuring the Cost of a Nutritious Diet

Palermo, C. E., Perera-Schulz, D., Kannan, A., Truby, H., Shiell, A. M., Emilda, S. & Quenette, S. M., 2014, In : JMIR mHealth and uHealth. 4, 50, p. 1 - 6 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

EMAGE: electronic mouse atlas of gene expression

Richardson, L., Stevenson, P., Venkataraman, S., Yang, Y., Burton, N., Rao, J., Christiansen, J., Baldock, R. A. & Davidson, D. R., 2014, In : Methods in Molecular Biology. 1092, p. 61 - 79 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Inappropriate use of the quasi-reversible electrode kinetic model in simulation-experiment comparisons of voltammetric processes that approach the reversible limit

Simonov, A., Morris, G. P., Mashkina, E., Bethwaite, B., Gillow, K., Baker, R. E., Gavaghan, D. J. & Bond, A. M., 2014, In : Analytical Chemistry. 86, 16, p. 8408 - 8417 10 p.

Research output: Contribution to journalArticleResearchpeer-review

New insights into the analysis of the electrode kinetics of flavin adenine dinucleotide redox center of glucose oxidase immobilized on carbon electrodes

Simonov, A., Grosse, W., Mashkina, E., Bethwaite, B., Tan, J., Abramson, D. A., Wallace, G. G., Moulton, S. E. & Bond, A. M., 2014, In : Langmuir: the ACS journal of surfaces and colloids. 30, 11, p. 3264 - 3273 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Operation of the Australian Store.Synchrotron for macromolecular crystallography

Meyer, G. R., Aragao, D., Mudie, N. J., Caradoc-Davies, T. T., McGowan, S., Bertling, P. J., Groenewegen, D., Quenette, S. M., Bond, C. S., Buckle, A. M. & Androulakis, S. G., 2014, In : Acta Crystallographica Section D: Biological Crystallography. 70, 10, p. 2510 - 2519 10 p.

Research output: Contribution to journalArticleResearchpeer-review

The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: Applications in neuroscience and neuroinformatics research

Goscinski, W., McIntosh, P. M., Felzmann, U., Maksimenko, A., Hall, C. J., Gureyev, T. E., Thompson, D., Janke, A., Galloway, G. J., Killeen, N., Raniga, P., Kaluza, O., Ng, A. C. L., Poudel, G., Barnes, D., Nguyen, T. D., Bonnington, C. P. & Egan, G. F., 2014, In : Frontiers in Neuroinformatics. 8, March, p. 1 - 13 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

The research data alliance: globally co-ordinated action against barriers to data publishing and sharing

Treloar, A. E., 2014, In : Learned Publishing. 27, 5, p. 9 - 13 5 p.

Research output: Contribution to journalArticleResearchpeer-review

2013

A suite of domain-specific visual languages for scientific software application modelling

Almorsy, M., Grundy, J., Sadus, R. J., van Straten, W., Barnes, D. G. & Kaluza, O., 2013, Proceedings - 2013 IEEE Symposium on Visual Languages and Human Centric Computing. Kelleher, C., Burnett, M. & Sauer, S. (eds.). Piscataway NJ USA: IEEE, Institute of Electrical and Electronics Engineers, p. 91 - 94 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

A tool for scientific provenance of data and software

Ceguerra, A. V., Liddicoat, P., Ringer, S., Goscinski, W. & Androulakis, S. G., 2013, Proceedings of the Sixteenth IEEE International Conference on Computational Science and Engineering. Chen, J., Cuzzocrea, A. & Yang, L. T. (eds.). Piscataway New Jersey USA: IEEE, Institute of Electrical and Electronics Engineers, p. 561 - 566 6 p. 6755269

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

Embedding and publishing interactive, 3-dimensional, scientific figures in portable document format (pdf) files

Barnes, D. G., Vidiassov, M., Ruthensteiner, B., Fluke, C. J., Quayle, M. & McHenry, C., 2013, In : PLoS ONE. 8, 9 (Art. ID: e69446), p. 1 - 15 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes

Perry, A. J. & Ho, B. K-C., 2013, In : Source Code for Biology and Medicine. 8, 1, p. 1 - 9 9 p., 9.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Interactive visualization tools for the structural biologist

Porebski, B. T., Ho, B. K-C. & Buckle, A. M., 2013, In : Journal of Applied Crystallography. 46, 5, p. 1518 - 1520 3 p.

Research output: Contribution to journalArticleOtherpeer-review