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2020

A comprehensive framework to capture the arcana of neuroimaging analysis

Close, T. G., Ward, P. G. D., Sforazzini, F., Goscinski, W., Chen, Z. & Egan, G. F., 2020, In : Neuroinformatics. 18, p. 109-129 21 p.

Research output: Contribution to journalArticleResearchpeer-review

Analysis of continuous infusion functional PET (fPET) in the human brain

Li, S., Jamadar, S. D., Ward, P. G. D., Premaratne, M., Egan, G. F. & Chen, Z., Jun 2020, In : NeuroImage. 213, 13 p., 116720.

Research output: Contribution to journalArticleResearchpeer-review

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Application of compressed sensing using chirp encoded 3D GRE and MPRAGE sequences

Pawar, K., Chen, Z., Zhang, J., Shah, N. J. & Egan, G. F., 2020, (Accepted/In press) In : International Journal of Imaging Systems and Technology. 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Bayesian fusion and multimodal DCM for EEG and fMRI

Wei, H., Jafarian, A., Zeidman, P., Litvak, V., Razi, A., Hu, D. & Friston, K. J., 1 May 2020, In : NeuroImage. 211, 16 p., 116595.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Brain compensation during visuospatial working memory in premanifest Huntington's disease

Soloveva, M. V., Jamadar, S. D., Velakoulis, D., Poudel, G. & Georgiou-Karistianis, N., Jan 2020, In : Neuropsychologia. 136, 11 p., 107262.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Identifying and removing widespread signal deflections from fMRI data: Rethinking the global signal regression problem

Aquino, K. M., Fulcher, B. D., Parkes, L., Sabaroedin, K. & Fornito, A., 15 May 2020, In : NeuroImage. 212, 20 p., 116614.

Research output: Contribution to journalArticleResearchpeer-review

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International Brain Initiative: an innovative framework for coordinated global brain research efforts

International Brain Initiative, 22 Jan 2020, In : Neuron. 105, 2, p. 212-216 5 p.

Research output: Contribution to journalArticleOtherpeer-review

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Morphometric in vivo evidence of thalamic atrophy correlated with cognitive and motor dysfunction in Huntington's disease: the IMAGE-HD study

Furlong, L. S., Jakabek, D., Power, B. D., Owens-Walton, C., Wilkes, F. A., Walterfang, M., Velakoulis, D., Egan, G., Looi, J. CL. & Georgiou-Karistianis, N., 30 Apr 2020, In : Psychiatry Research - Neuroimaging. 298, 8 p., 111048.

Research output: Contribution to journalArticleResearchpeer-review

Motion-Induced Blindness as a Tool to Measure Attentional Biases and the Link to Attention- Deficit/Hyperactivity Traits

McEwen, C., Paton, B., Tsuchiya, N. & van Boxtel, J. J. A., 2020, (Accepted/In press) In : Journal of Experimental Psychology: General. 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Multiple mechanisms underpin cerebral and cerebellar white matter deficits in Friedreich ataxia: The IMAGE-FRDA study

Selvadurai, L. P., Corben, L. A., Delatycki, M. B., Storey, E., Egan, G. F., Georgiou-Karistianis, N. & Harding, I. H., 6 Jan 2020, (Accepted/In press) In : Human Brain Mapping. 14 p.

Research output: Contribution to journalArticleResearchpeer-review

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On Markov blankets and hierarchical self-organisation

Palacios, E. R., Razi, A., Parr, T., Kirchhoff, M. & Friston, K., 7 Feb 2020, In : Journal of Theoretical Biology. 486, 14 p., 110089.

Research output: Contribution to journalArticleResearchpeer-review

The physiological effects of noninvasive brain stimulation fundamentally differ across the human cortex

Castrillon, G., Sollmann, N., Kurcyus, K., Razi, A., Krieg, S. M. & Riedl, V., 31 Jan 2020, In : Science Advances. 6, 5, 12 p., eaay2739.

Research output: Contribution to journalArticleResearchpeer-review

2019

A deep learning framework for transforming image reconstruction into pixel classification

Pawar, K., Chen, Z., Shah, N. J. & Egan, G. F., 2019, In : IEEE Access. 7, p. 177690-177702 13 p., 8931762.

Research output: Contribution to journalArticleResearchpeer-review

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Advanced age promotes colonic dysfunction and gut-derived lung infection after stroke

Wen, S. W., Shim, R., Ho, L., Wanrooy, B. J., Srikhanta, Y., Prame Kumar, K., Nicholls, A. J., Shen, S., Sepehrizadeh, T., De Veer, M., Srikanth, V., Ma, H., Phan, T., Lyras, D. & Wong, C., 1 Oct 2019, In : Aging Cell. 18, 5, 13 p., e12980.

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2 Citations (Scopus)

Advanced MRI analysis to detect white matter brain injury in growth restricted newborn lambs

Malhotra, A., Sepehrizadeh, T., Dhollander, T., Wright, D., Castillo-Melendez, M., Sutherland, A. E., Pham, Y., Ditchfield, M., Polglase, G. R., de Veer, M., Jenkin, G., Pannek, K., Shishegar, R. & Miller, S. L., 1 Jan 2019, In : NeuroImage: Clinical. 24, 9 p., 101991.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

A guide to group effective connectivity analysis, part 1: First level analysis with DCM for fMRI

Zeidman, P., Jafarian, A., Corbin, N., Seghier, M. L., Razi, A., Price, C. J. & Friston, K. J., 15 Oct 2019, In : NeuroImage. 200, p. 174-190 17 p.

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2 Citations (Scopus)

Consistency and differences between centrality measures across distinct classes of networks

Oldham, S., Fulcher, B., Parkes, L., Arnatkeviciūtė, A., Suo, C. & Fornito, A., 26 Jul 2019, In : PLoS ONE. 14, 7, 23 p., e0220061.

Research output: Contribution to journalArticleResearchpeer-review

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4 Citations (Scopus)

Diastolic dysfunction is initiated by cardiomyocyte impairment ahead of endothelial dysfunction due to increased oxidative stress and inflammation in an experimental prediabetes model

Waddingham, M. T., Sonobe, T., Tsuchimochi, H., Edgley, A. J., Sukumaran, V., Chen, Y. C., Hansra, S. S., Schwenke, D. O., Umetani, K., Aoyama, K., Yagi, N., Kelly, D. J., Gaderi, S., Herwig, M., Kolijn, D., Mügge, A., Paulus, W. J., Ogo, T., Shirai, M., Hamdani, N. & 1 others, Pearson, J. T., 1 Dec 2019, In : Journal of Molecular and Cellular Cardiology. 137, p. 119-131 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Dynamic causal modelling of fluctuating connectivity in resting-state EEG

Van de Steen, F., Almgren, H., Razi, A., Friston, K. & Marinazzo, D., 1 Apr 2019, In : NeuroImage. 189, p. 476-484 9 p.

Research output: Contribution to journalArticleResearchpeer-review

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2 Citations (Scopus)

Effective connectivity changes in LSD-induced altered states of consciousness in humans

Preller, K. H., Razi, A., Zeidman, P., Stämpfli, P., Friston, K. J. & Vollenweider, F. X., 12 Feb 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 7, p. 2743-2748 6 p.

Research output: Contribution to journalArticleResearchpeer-review

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10 Citations (Scopus)

Fully solution-processed transparent artificial neural network using drop-on-demand electrohydrodynamic printing

Yong, J., Liang, Y., Yu, Y., Hassan, B., Hossain, M. S., Ganesan, K., Unnithan, R. R., Evans, R., Egan, G., Chana, G., Nasr, B. & Skafidas, E., 15 May 2019, In : ACS Applied Materials and Interfaces. 11, 19, p. 17521-17530 10 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Functional Brush Poly(2-ethyl-2-oxazine)s: Synthesis by CROP and RAFT, Thermoresponsiveness and Grafting onto Iron Oxide Nanoparticles

Klein, T., Parkin, J., de Jongh, P. A. J. M., Esser, L., Sepehrizadeh, T., Zheng, G., De Veer, M., Alt, K., Hagemeyer, C. E., Haddleton, D. M., Davis, T. P., Thelakkat, M. & Kempe, K., May 2019, In : Macromolecular Rapid Communications. 40, 10, 6 p., 1800911.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Functional Connectivity of Corticostriatal Circuitry and Psychosis-like Experiences in the General Community

Sabaroedin, K., Tiego, J., Parkes, L., Sforazzini, F., Finlay, A., Johnson, B., Pinar, A., Cropley, V., Harrison, B. J., Zalesky, A., Pantelis, C., Bellgrove, M. & Fornito, A., 1 Jul 2019, In : Biological Psychiatry. 86, 1, p. 16-24 9 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Intrinsic connectomes are a predictive biomarker of remission in major depressive disorder

Korgaonkar, M. S., Goldstein-Piekarski, A. N., Fornito, A. & Williams, L. M., 6 Nov 2019, (Accepted/In press) In : Molecular Psychiatry. 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Longitudinal evaluation of iron concentration and atrophy in the dentate nuclei in friedreich ataxia

Ward, P. G. D., Harding, I. H., Close, T. G., Corben, L. A., Delatycki, M. B., Storey, E., Georgiou-Karistianis, N. & Egan, G. F., Mar 2019, In : Movement Disorders. 34, 3, p. 335-343 9 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease

Wilmanns, J. C., Pandey, R., Hon, O., Chandran, A., Schilling, J. M., Forte, E., Wu, Q., Cagnone, G., Bais, P., Philip, V., Coleman, D., Kocalis, H., Archer, S. K., Pearson, J. T., Ramialison, M., Heineke, J., Patel, H. H., Rosenthal, N. A., Furtado, M. B. & Costa, M. W., Feb 2019, In : Molecular Metabolism. 20, p. 102-114 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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2 Citations (Scopus)

Mindfulness Meditators Do Not Show Differences in Electrophysiological Measures of Error Processing

Bailey, N. W., Raj, K., Freedman, G., Fitzgibbon, B., Rogasch, N. C., Van Dam, N. T. & Fitzgerald, P. B., 15 Jul 2019, In : Mindfulness. 10, 7, p. 1360-1380 21 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Mindfulness meditators show altered distributions of early and late neural activity markers of attention in a response inhibition task

Bailey, N., Freedman, G., Raj, K., Sullivan, C., Rogasch, N., Chung, S., Hoy, K., Chambers, R., Hassed, C., Van Dam, N., Koenig, T. & Fitzgerald, P., 6 Aug 2019, In : PLoS ONE. 14, 8, 25 p., e0203096.

Research output: Contribution to journalArticleResearchpeer-review

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MR-PET head motion correction based on co-registration of multicontrast MR images

Chen, Z., Sforazzini, F., Baran, J., Close, T., Shah, N. J. & Egan, G. F., 1 Jan 2019, (Accepted/In press) In : Human Brain Mapping. 11 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Network spread determines severity of degeneration and disconnection in Huntington's disease

Poudel, G. R., Harding, I. H., Egan, G. F. & Georgiou-Karistianis, N., 1 Oct 2019, In : Human Brain Mapping. 40, 14, p. 4192-4201 10 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Neurodevelopmental correlates of the emerging adult self

Davey, C. G., Fornito, A., Pujol, J., Breakspear, M., Schmaal, L. & Harrison, B. J., Apr 2019, In : Developmental Cognitive Neuroscience. 36, 7 p., 100626.

Research output: Contribution to journalArticleResearchpeer-review

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Radiotracer Administration for High Temporal Resolution Positron Emission Tomography of the Human Brain: Application to FDG-fPET

Jamadar, S. D., Ward, P. G. D., Carey, A., McIntyre, R., Parkes, L., Sasan, D., Fallon, J., Orchard, E., Li, S., Chen, Z. & Egan, G. F., 22 Oct 2019, In : Journal of Visualized Experiments. 152, e60259.

Research output: Contribution to journalArticleOtherpeer-review

Open Access
1 Citation (Scopus)

Relating excitatory and inhibitory neurochemicals to visual perception: A magnetic resonance study of occipital cortex between migraine events

Chan, Y. M., Pitchaimuthu, K., Wu, Q-Z., Carter, O. L., Egan, G. F., Badcock, D. R. & McKendrick, A. M., 10 Jul 2019, In : PLoS ONE. 14, 7, 13 p., e0208666.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Sexual Dimorphism of Resting-State Network Connectivity in Healthy Ageing

Jamadar, S., Sforazzini, F., Raniga, P., Ferris, N. J., Paton, B., Bailey, M. J., Brodtmann, A., Yates, P. A., Donnan, G. A., Ward, S. A., Woods, R. L., Storey, E., McNeil, J. J., Egan, G. F. & on behalf of the ASPREE Investigator Group, Oct 2019, In : Journals of Gerontology - Series B Psychological Sciences and Social Sciences. 74, 7, p. 1121-1131 11 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Sialylated milk oligosaccharides alter neurotransmitters and brain metabolites in piglets: an In vivo magnetic resonance spectroscopic (MRS) study

Wang, H. X., Chen, Y., Haque, Z., de Veer, M., Egan, G. & Wang, B., 2019, (Accepted/In press) In : Nutritional Neuroscience. 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Simultaneous task-based BOLD-fMRI and [18-F] FDG functional PET for measurement of neuronal metabolism in the human visual cortex

Jamadar, S. D., Ward, P. GD., Li, S., Sforazzini, F., Baran, J., Chen, Z. & Egan, G. F., 1 Apr 2019, In : NeuroImage. 189, p. 258-266 9 p.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Staged treatment and acceptability guidelines in early psychosis study (STAGES): A randomized placebo controlled trial of intensive psychosocial treatment plus or minus antipsychotic medication for first-episode psychosis with low-risk of self-harm or aggression. Study protocol and baseline characteristics of participants

O'Donoghue, B., Francey, S. M., Nelson, B., Ratheesh, A., Allott, K., Graham, J., Baldwin, L., Alvarez-Jimenez, M., Thompson, A., Fornito, A., Polari, A., Berk, M., Macneil, C., Crisp, K., Pantelis, C., Yuen, H. P., Harrigan, S. & Mcgorry, P., Aug 2019, In : Early Intervention in Psychiatry. 13, 4, p. 953-960 8 p.

Research output: Contribution to journalArticleOtherpeer-review

Striatal morphology and neurocognitive dysfunction in Huntington disease: the IMAGE-HD study

Wilkes, F. A., Abaryan, Z., Ching, C. R. K., Gutman, B. A., Madsen, S. K., Walterfang, M., Velakoulis, D., Stout, J. C., Chua, P., Egan, G. F., Thompson, P. M., Looi, J. C. L. & Georgiou-Karistianis, N., 30 Sep 2019, In : Psychiatry Research - Neuroimaging. 291, p. 1-8 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Stroke Severity, and Not Cerebral Infarct Location, Increases the Risk of Infection

Shim, R., Wen, S. W., Wanrooy, B. J., Rank, M., Thirugnanachandran, T., Ho, L., Sepehrizadeh, T., de Veer, M., Srikanth, V. K., Ma, H., Phan, T. G., Sobey, C. G. & Wong, C. H. Y., 10 Nov 2019, (Accepted/In press) In : Translational Stroke Research. 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Suppressing motion artefacts in MRI using an Inception-ResNet network with motion simulation augmentation

Pawar, K., Chen, Z., Shah, N. J. & Egan, G. F., 2019, (Accepted/In press) In : NMR in Biomedicine. 14 p., e4225.

Research output: Contribution to journalArticleResearchpeer-review

Transdiagnostic variations in impulsivity and compulsivity in obsessive-compulsive disorder and gambling disorder correlate with effective connectivity in cortical-striatal-thalamic-cortical circuits

Parkes, L., Tiego, J., Aquino, K., Braganza, L., Chamberlain, S. R., Fontenelle, L. F., Harrison, B. J., Lorenzetti, V., Paton, B., Razi, A., Fornito, A. & Yücel, M., 15 Nov 2019, In : NeuroImage. 202, 10 p., 116070.

Research output: Contribution to journalArticleResearchpeer-review

Variable outcomes of human heart attack recapitulated in genetically diverse mice

Salimova, E., Nowak, K. J., Estrada, A. C., Furtado, M. B., McNamara, E., Nguyen, Q., Balmer, L., Preuss, C., Holmes, J. W., Ramialison, M., Morahan, G. & Rosenthal, N. A., 4 Mar 2019, In : Npj Regenerative Medicine. 4, 15 p., 5.

Research output: Contribution to journalArticleResearchpeer-review

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2018

Accurate hybrid template-based and MR-based attenuation correction using UTE images for simultaneous PET/MR brain imaging applications

Baran, J., Chen, Z., Sforazzini, F., Ferris, N., Jamadar, S., Schmitt, B., Faul, D., Shah, N. J., Cholewa, M. & Egan, G. F., 6 Nov 2018, In : BMC Medical Imaging. 18, 1, 16 p., 41.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2 Citations (Scopus)

A validation of dynamic causal modelling for 7T fMRI

Tak, S., Noh, J., Cheong, C., Zeidman, P., Razi, A., Penny, W. D. & Friston, K. J., 15 Jul 2018, In : Journal of Neuroscience Methods. 305, p. 36-45 10 p.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Combining images and anatomical knowledge to improve automated vein segmentation in MRI

Ward, P. G. D., Ferris, N. J., Raniga, P., Dowe, D. L., Ng, A. C. L., Barnes, D. G. & Egan, G. F., 2018, In : NeuroImage. 165, p. 294-605 12 p.

Research output: Contribution to journalArticleResearchpeer-review

10 Citations (Scopus)

Comparison of Rossini–Rothwell and adaptive threshold-hunting methods on the stability of TMS induced motor evoked potentials amplitudes

Dissanayaka, T., Zoghi, M., Farrell, M., Egan, G. & Jaberzadeh, S., Nov 2018, In : Journal of Neuroscience Research. 96, 11, p. 1758-1765 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Differential effect of disease-associated ST8SIA2 haplotype on cerebral white matter diffusion properties in schizophrenia and healthy controls

Fullerton, J. M., Klauser, P., Lenroot, R. K., Shaw, A. D., Overs, B., Heath, A., Cairns, M. J., Atkins, J., Scott, R., The Australian Schizophrenia Research Bank, Schofield, P. R., Weickert, C. S., Pantelis, C., Fornito, A., Whitford, T. J., Weickert, T. W. & Zalesky, A., 1 Dec 2018, In : Translational Psychiatry. 8, 1, 10 p., 21.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Dissociating neural variability related to stimulus quality and response times in perceptual decision-making

Bode, S., Bennett, D., Sewell, D. K., Paton, B., Egan, G. F., Smith, P. L. & Murawski, C., 1 Mar 2018, In : Neuropsychologia. 111, p. 190-200 11 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)