Research Output

2020

A comprehensive framework to capture the arcana of neuroimaging analysis

Close, T. G., Ward, P. G. D., Sforazzini, F., Goscinski, W., Chen, Z. & Egan, G. F., 2020, In : Neuroinformatics. 18, p. 109-129 21 p.

Research output: Contribution to journalArticleResearchpeer-review

Analysis of continuous infusion functional PET (fPET) in the human brain

Li, S., Jamadar, S. D., Ward, P. G. D., Premaratne, M., Egan, G. F. & Chen, Z., Jun 2020, In : NeuroImage. 213, 13 p., 116720.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Application of compressed sensing using chirp encoded 3D GRE and MPRAGE sequences

Pawar, K., Chen, Z., Zhang, J., Shah, N. J. & Egan, G. F., 2020, (Accepted/In press) In : International Journal of Imaging Systems and Technology. 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Bayesian fusion and multimodal DCM for EEG and fMRI

Wei, H., Jafarian, A., Zeidman, P., Litvak, V., Razi, A., Hu, D. & Friston, K. J., 1 May 2020, In : NeuroImage. 211, 16 p., 116595.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Brain compensation during visuospatial working memory in premanifest Huntington's disease

Soloveva, M. V., Jamadar, S. D., Velakoulis, D., Poudel, G. & Georgiou-Karistianis, N., Jan 2020, In : Neuropsychologia. 136, 11 p., 107262.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Erratum: A Neuroethics Framework for the Australian Brain Initiative (Neuron (2019) 101(3) (365–369), (S0896627319300054), (10.1016/j.neuron.2019.01.004))

Australian Brain Alliance, 8 Jan 2020, In : Neuron. 105, 1, 1 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Open Access
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Erratum: International Brain Initiative: an innovative framework for coordinated global brain research efforts

International Brain Initiative, 4 Mar 2020, In : Neuron. 105, 5, p. 947 1 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Open Access

Identifying and removing widespread signal deflections from fMRI data: Rethinking the global signal regression problem

Aquino, K. M., Fulcher, B. D., Parkes, L., Sabaroedin, K. & Fornito, A., 15 May 2020, In : NeuroImage. 212, 20 p., 116614.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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International Brain Initiative: an innovative framework for coordinated global brain research efforts

International Brain Initiative, 22 Jan 2020, In : Neuron. 105, 2, p. 212-216 5 p.

Research output: Contribution to journalArticleOtherpeer-review

Open Access
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Morphometric in vivo evidence of thalamic atrophy correlated with cognitive and motor dysfunction in Huntington's disease: the IMAGE-HD study

Furlong, L. S., Jakabek, D., Power, B. D., Owens-Walton, C., Wilkes, F. A., Walterfang, M., Velakoulis, D., Egan, G., Looi, J. CL. & Georgiou-Karistianis, N., 30 Apr 2020, In : Psychiatry Research - Neuroimaging. 298, 8 p., 111048.

Research output: Contribution to journalArticleResearchpeer-review

Motion-Induced Blindness as a Tool to Measure Attentional Biases and the Link to Attention- Deficit/Hyperactivity Traits

McEwen, C., Paton, B., Tsuchiya, N. & van Boxtel, J. J. A., 2020, (Accepted/In press) In : Journal of Experimental Psychology: General. 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Multiple mechanisms underpin cerebral and cerebellar white matter deficits in Friedreich ataxia: The IMAGE-FRDA study

Selvadurai, L. P., Corben, L. A., Delatycki, M. B., Storey, E., Egan, G. F., Georgiou-Karistianis, N. & Harding, I. H., 6 Jan 2020, (Accepted/In press) In : Human Brain Mapping. 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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On Markov blankets and hierarchical self-organisation

Palacios, E. R., Razi, A., Parr, T., Kirchhoff, M. & Friston, K., 7 Feb 2020, In : Journal of Theoretical Biology. 486, 14 p., 110089.

Research output: Contribution to journalArticleResearchpeer-review

The physiological effects of noninvasive brain stimulation fundamentally differ across the human cortex

Castrillon, G., Sollmann, N., Kurcyus, K., Razi, A., Krieg, S. M. & Riedl, V., 31 Jan 2020, In : Science Advances. 6, 5, 12 p., eaay2739.

Research output: Contribution to journalArticleResearchpeer-review

2019

A deep learning framework for transforming image reconstruction into pixel classification

Pawar, K., Chen, Z., Shah, N. J. & Egan, G. F., 2019, In : IEEE Access. 7, p. 177690-177702 13 p., 8931762.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Advanced age promotes colonic dysfunction and gut-derived lung infection after stroke

Wen, S. W., Shim, R., Ho, L., Wanrooy, B. J., Srikhanta, Y., Prame Kumar, K., Nicholls, A. J., Shen, S., Sepehrizadeh, T., De Veer, M., Srikanth, V., Ma, H., Phan, T., Lyras, D. & Wong, C., 1 Oct 2019, In : Aging Cell. 18, 5, 13 p., e12980.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2 Citations (Scopus)

Advanced MRI analysis to detect white matter brain injury in growth restricted newborn lambs

Malhotra, A., Sepehrizadeh, T., Dhollander, T., Wright, D., Castillo-Melendez, M., Sutherland, A. E., Pham, Y., Ditchfield, M., Polglase, G. R., de Veer, M., Jenkin, G., Pannek, K., Shishegar, R. & Miller, S. L., 1 Jan 2019, In : NeuroImage: Clinical. 24, 9 p., 101991.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

A guide to group effective connectivity analysis, part 1: First level analysis with DCM for fMRI

Zeidman, P., Jafarian, A., Corbin, N., Seghier, M. L., Razi, A., Price, C. J. & Friston, K. J., 15 Oct 2019, In : NeuroImage. 200, p. 174-190 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2 Citations (Scopus)

Altered Cortical Morphometry in Pre-manifest Huntington's Disease: Cross-sectional Data from the IMAGE-HD Study

Shishegar, R., Rajapakse, S. & Georgiou-Karistianis, N., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Subramaniam, S. (ed.). New York, NY: IEEE, Institute of Electrical and Electronics Engineers, p. 2844-2847 4 p. 8857240

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

A Neuroethics Framework for the Australian Brain Initiative

Australian Brain Alliance, 6 Feb 2019, In : Neuron. 101, 3, p. 365-369 5 p.

Research output: Contribution to journalShort SurveyOtherpeer-review

Open Access
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2 Citations (Scopus)

A Systematic Meta-Review of Impulsivity and Compulsivity in Addictive Behaviors

Lee, R. S. C., Hoppenbrouwers, S. & Franken, I., 30 Mar 2019, In : Neuropsychology Review. 29, p. 14-26 13 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

7 Citations (Scopus)

Bridging the Gap between Connectome and Transcriptome

Fornito, A., Arnatkevičiūtė, A. & Fulcher, B. D., 1 Jan 2019, In : Trends in Cognitive Sciences. 23, 1, p. 34-50 17 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

7 Citations (Scopus)

Consistency and differences between centrality measures across distinct classes of networks

Oldham, S., Fulcher, B., Parkes, L., Arnatkeviciūtė, A., Suo, C. & Fornito, A., 26 Jul 2019, In : PLoS ONE. 14, 7, 23 p., e0220061.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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4 Citations (Scopus)

Deep learning based motion estimation from highly under-sampled EPI volumetric navigators

Hasiuk, M., Pawar, K., Zhong, S., McIntyre, R., Chen, Z. & Egan, G., May 2019. 3 p.

Research output: Contribution to conferenceAbstract

Diastolic dysfunction is initiated by cardiomyocyte impairment ahead of endothelial dysfunction due to increased oxidative stress and inflammation in an experimental prediabetes model

Waddingham, M. T., Sonobe, T., Tsuchimochi, H., Edgley, A. J., Sukumaran, V., Chen, Y. C., Hansra, S. S., Schwenke, D. O., Umetani, K., Aoyama, K., Yagi, N., Kelly, D. J., Gaderi, S., Herwig, M., Kolijn, D., Mügge, A., Paulus, W. J., Ogo, T., Shirai, M., Hamdani, N. & 1 others, Pearson, J. T., 1 Dec 2019, In : Journal of Molecular and Cellular Cardiology. 137, p. 119-131 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Dynamic causal modelling of fluctuating connectivity in resting-state EEG

Van de Steen, F., Almgren, H., Razi, A., Friston, K. & Marinazzo, D., 1 Apr 2019, In : NeuroImage. 189, p. 476-484 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2 Citations (Scopus)

Effective connectivity changes in LSD-induced altered states of consciousness in humans

Preller, K. H., Razi, A., Zeidman, P., Stämpfli, P., Friston, K. J. & Vollenweider, F. X., 12 Feb 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 7, p. 2743-2748 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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10 Citations (Scopus)

Enforcing Structural Similarity in Deep Learning MR Image Reconstruction

Pawar, K., Chen, Z., Shah, J. & Egan, G., May 2019, p. 4711.

Research output: Contribution to conferenceAbstract

Fully solution-processed transparent artificial neural network using drop-on-demand electrohydrodynamic printing

Yong, J., Liang, Y., Yu, Y., Hassan, B., Hossain, M. S., Ganesan, K., Unnithan, R. R., Evans, R., Egan, G., Chana, G., Nasr, B. & Skafidas, E., 15 May 2019, In : ACS Applied Materials and Interfaces. 11, 19, p. 17521-17530 10 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Functional Brush Poly(2-ethyl-2-oxazine)s: Synthesis by CROP and RAFT, Thermoresponsiveness and Grafting onto Iron Oxide Nanoparticles

Klein, T., Parkin, J., de Jongh, P. A. J. M., Esser, L., Sepehrizadeh, T., Zheng, G., De Veer, M., Alt, K., Hagemeyer, C. E., Haddleton, D. M., Davis, T. P., Thelakkat, M. & Kempe, K., May 2019, In : Macromolecular Rapid Communications. 40, 10, 6 p., 1800911.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Functional Connectivity of Corticostriatal Circuitry and Psychosis-like Experiences in the General Community

Sabaroedin, K., Tiego, J., Parkes, L., Sforazzini, F., Finlay, A., Johnson, B., Pinar, A., Cropley, V., Harrison, B. J., Zalesky, A., Pantelis, C., Bellgrove, M. & Fornito, A., 1 Jul 2019, In : Biological Psychiatry. 86, 1, p. 16-24 9 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Intrinsic connectomes are a predictive biomarker of remission in major depressive disorder

Korgaonkar, M. S., Goldstein-Piekarski, A. N., Fornito, A. & Williams, L. M., 6 Nov 2019, (Accepted/In press) In : Molecular Psychiatry. 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Is (poly-) substance use associated with impaired inhibitory control? A mega-analysis controlling for confounders

Liu, Y., van den Wildenberg, W. P. M., de Graaf, Y., Ames, S. L., Baldacchino, A., Bø, R., Cadaveira, F., Campanella, S., Christiansen, P., Claus, E. D., Colzato, L. S., Filbey, F. M., Foxe, J. J., Garavan, H., Hendershot, C. S., Hester, R., Jester, J. M., Karoly, H. C., Kräplin, A., Kreusch, F. & 35 others, Landrø, N. I., Littel, M., Loeber, S., London, E. D., López-Caneda, E., Lubman, D. I., Luijten, M., Marczinski, C. A., Metrik, J., Montgomery, C., Papachristou, H., Mi Park, S., Paz, A. L., Petit, G., Prisciandaro, J. J., Quednow, B. B., Ray, L. A., Roberts, C. A., Roberts, G. M. P., de Ruiter, M. B., Rupp, C. I., Steele, V. R., Sun, D., Takagi, M., Tapert, S. F., van Holst, R. J., Verdejo-Garcia, A., Vonmoos, M., Wojnar, M., Yao, Y., Yücel, M., Zack, M., Zucker, R. A., Huizenga, H. M. & Wiers, R. W., 15 Jul 2019, (Accepted/In press) In : Neuroscience and Biobehavioral Reviews. 17 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Joint reconstruction of PET + parallel-MRI in a Bayesian coupled-dictionary MRF framework

Sudarshan, V. P., Gupta, K., Egan, G., Chen, Z. & Awate, S. P., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019: 22nd International Conference Shenzhen, China, October 13–17, 2019 Proceedings, Part III. Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). 1st ed. Cham Switzerland: Springer, p. 39-47 9 p. (Lecture Notes in Computer Science; vol. 11766).

Research output: Chapter in Book/Report/Conference proceedingConference PaperResearchpeer-review

Longitudinal evaluation of iron concentration and atrophy in the dentate nuclei in friedreich ataxia

Ward, P. G. D., Harding, I. H., Close, T. G., Corben, L. A., Delatycki, M. B., Storey, E., Georgiou-Karistianis, N. & Egan, G. F., Mar 2019, In : Movement Disorders. 34, 3, p. 335-343 9 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease

Wilmanns, J. C., Pandey, R., Hon, O., Chandran, A., Schilling, J. M., Forte, E., Wu, Q., Cagnone, G., Bais, P., Philip, V., Coleman, D., Kocalis, H., Archer, S. K., Pearson, J. T., Ramialison, M., Heineke, J., Patel, H. H., Rosenthal, N. A., Furtado, M. B. & Costa, M. W., Feb 2019, In : Molecular Metabolism. 20, p. 102-114 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2 Citations (Scopus)

Mindfulness Meditators Do Not Show Differences in Electrophysiological Measures of Error Processing

Bailey, N. W., Raj, K., Freedman, G., Fitzgibbon, B., Rogasch, N. C., Van Dam, N. T. & Fitzgerald, P. B., 15 Jul 2019, In : Mindfulness. 10, 7, p. 1360-1380 21 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Mindfulness meditators show altered distributions of early and late neural activity markers of attention in a response inhibition task

Bailey, N., Freedman, G., Raj, K., Sullivan, C., Rogasch, N., Chung, S., Hoy, K., Chambers, R., Hassed, C., Van Dam, N., Koenig, T. & Fitzgerald, P., 6 Aug 2019, In : PLoS ONE. 14, 8, 25 p., e0203096.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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MR-PET head motion correction based on co-registration of multicontrast MR images

Chen, Z., Sforazzini, F., Baran, J., Close, T., Shah, N. J. & Egan, G. F., 1 Jan 2019, (Accepted/In press) In : Human Brain Mapping. 11 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Network spread determines severity of degeneration and disconnection in Huntington's disease

Poudel, G. R., Harding, I. H., Egan, G. F. & Georgiou-Karistianis, N., 1 Oct 2019, In : Human Brain Mapping. 40, 14, p. 4192-4201 10 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Neurodevelopmental correlates of the emerging adult self

Davey, C. G., Fornito, A., Pujol, J., Breakspear, M., Schmaal, L. & Harrison, B. J., Apr 2019, In : Developmental Cognitive Neuroscience. 36, 7 p., 100626.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Radiotracer Administration for High Temporal Resolution Positron Emission Tomography of the Human Brain: Application to FDG-fPET

Jamadar, S. D., Ward, P. G. D., Carey, A., McIntyre, R., Parkes, L., Sasan, D., Fallon, J., Orchard, E., Li, S., Chen, Z. & Egan, G. F., 22 Oct 2019, In : Journal of Visualized Experiments. 152, e60259.

Research output: Contribution to journalArticleOtherpeer-review

Open Access
1 Citation (Scopus)

Relating excitatory and inhibitory neurochemicals to visual perception: A magnetic resonance study of occipital cortex between migraine events

Chan, Y. M., Pitchaimuthu, K., Wu, Q-Z., Carter, O. L., Egan, G. F., Badcock, D. R. & McKendrick, A. M., 10 Jul 2019, In : PLoS ONE. 14, 7, 13 p., e0208666.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

Reproducibility in TMS-EEG studies: a call for data sharing, standard procedures and effective experimental control

Belardinelli, P., Biabanimoghadam, M., Blumberger, D. M., Bortoletto, M., Casarotto, S., David, O., Desideri, D., Etkin, A., Ferrarelli, F., Fitzgerald, P. B., Fornito, A., Gordon, P. C., Gosseries, O., Harquel, S., Julkunen, P., Keller, C. J., Kimiskidis, V. K., Lioumis, P., Miniussi, C., Rosanova, M. & 1 others, Rogasch, N. C., May 2019, In : Brain Stimulation. 12, 3, p. 787-790 4 p.

Research output: Contribution to journalLetterResearchpeer-review

Open Access
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7 Citations (Scopus)

Sexual Dimorphism of Resting-State Network Connectivity in Healthy Ageing

Jamadar, S., Sforazzini, F., Raniga, P., Ferris, N. J., Paton, B., Bailey, M. J., Brodtmann, A., Yates, P. A., Donnan, G. A., Ward, S. A., Woods, R. L., Storey, E., McNeil, J. J., Egan, G. F. & on behalf of the ASPREE Investigator Group, Oct 2019, In : Journals of Gerontology - Series B Psychological Sciences and Social Sciences. 74, 7, p. 1121-1131 11 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Sialylated milk oligosaccharides alter neurotransmitters and brain metabolites in piglets: an In vivo magnetic resonance spectroscopic (MRS) study

Wang, H. X., Chen, Y., Haque, Z., de Veer, M., Egan, G. & Wang, B., 2019, (Accepted/In press) In : Nutritional Neuroscience. 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Simultaneous task-based BOLD-fMRI and [18-F] FDG functional PET for measurement of neuronal metabolism in the human visual cortex

Jamadar, S. D., Ward, P. GD., Li, S., Sforazzini, F., Baran, J., Chen, Z. & Egan, G. F., 1 Apr 2019, In : NeuroImage. 189, p. 258-266 9 p.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Staged treatment and acceptability guidelines in early psychosis study (STAGES): A randomized placebo controlled trial of intensive psychosocial treatment plus or minus antipsychotic medication for first-episode psychosis with low-risk of self-harm or aggression. Study protocol and baseline characteristics of participants

O'Donoghue, B., Francey, S. M., Nelson, B., Ratheesh, A., Allott, K., Graham, J., Baldwin, L., Alvarez-Jimenez, M., Thompson, A., Fornito, A., Polari, A., Berk, M., Macneil, C., Crisp, K., Pantelis, C., Yuen, H. P., Harrigan, S. & Mcgorry, P., Aug 2019, In : Early Intervention in Psychiatry. 13, 4, p. 953-960 8 p.

Research output: Contribution to journalArticleOtherpeer-review