Research Output 1996 2019

2019
3 Citations (Scopus)

Analysis of cluster-randomized test-negative designs: Cluster-level methods

Jewell, N. P., Dufault, S., Cutcher, Z., Simmons, C. P. & Anders, K. L., 1 Apr 2019, In : Biostatistics. 20, 2, p. 332-346 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Attenuation of a dengue virus replicon by codon deoptimization of nonstructural genes

Manokaran, G., Sujatmoko, McPherson, K. G. & Simmons, C. P., 9 May 2019, In : Vaccine. 37, 21, p. 2857-2863 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Detecting wMel Wolbachia in field-collected Aedes aegypti mosquitoes using loop-mediated isothermal amplification (LAMP)

Gonçalves, D. D. S., Hooker, D. J., Dong, Y., Baran, N., Kyrylos, P., Iturbe-Ormaetxe, I., Simmons, C. P. & O'Neill, S. L., 15 Aug 2019, In : Parasites and Vectors. 12, 1, 5 p., 404.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Differential suppression of persistent insect specific viruses in trans-infected wMel and wMelPop-CLA Aedes-derived mosquito lines

McLean, B. J., Dainty, K. R., Flores, H. A. & O'Neill, S. L., 15 Jan 2019, In : Virology. 527, p. 141-145 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Novel Flavivirus Antiviral That Targets the Host Nuclear Transport Importin α/β1 Heterodimer

Yang, S. N. Y., Atkinson, S. C., Fraser, J. E., Wang, C., Maher, B., Roman, N., Forwood, J. K., Wagstaff, K. M., Borg, N. A. & Jans, D. A., 24 Mar 2019, In : Cells. 8, 3, 15 p., 281.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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The Role of Maternally Acquired Antibody in Providing Protective Immunity Against Nontyphoidal Salmonella in Urban Vietnamese Infants: A Birth Cohort Study

De Alwis, R., Tu, L. T. P., Quynh, N. L. T., Thompson, C. N., Anders, K. L., Van Thuy, N. T., Hieu, N. T., Vi, L. L., Chau, N. V. V., Duong, V. T., Chau, T. T. H., Tuyen, H. T., Nga, T. V. T., Minh, P. V., Tan, T. V., Thu, T. N. H., Nhu, T. D. H., Thwaites, G. E., Simmons, C. & Baker, S., 7 Jan 2019, In : Journal of Infectious Diseases. 219, 2, p. 295-304 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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3 Citations (Scopus)

Wolbachia introduction into Lutzomyia longipalpis (Diptera: Psychodidae) cell lines and its effects on immune-related gene expression and interaction with Leishmania infantum

Da Silva Gonçalves, D., Iturbe-Ormaetxe, I., Martins-Da-Silva, A., Telleria, E. L., Rocha, M. N., Traub-Csekö, Y. M., O'Neill, S. L., Sant'Anna, M. R. V. & Moreira, L. A., 15 Jan 2019, In : Parasites and Vectors. 12, 1, 13 p., 33.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2018
2 Citations (Scopus)

Baseline characterization of dengue epidemiology in Yogyakarta City, Indonesia, before a randomized controlled trial of Wolbachia for arboviral disease control

Indriani, C., Ahmad, R. A., Wiratama, B. S., Arguni, E., Supriyati, E., Sasmono, R. T., Kisworini, F. Y., Ryan, P. A., O'Neill, S. L., Simmons, C. P., Utarini, A. & Anders, K. L., 1 Jan 2018, In : American Journal of Tropical Medicine and Hygiene. 99, 5, p. 1299-1307 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
3 Citations (Scopus)

Cluster-randomized test-negative design trials: A novel and efficient method to assess the efficacy of community-level dengue interventions

Anders, K. L., Cutcher, Z., Kleinschmidt, I., Donnelly, C. A., Ferguson, N. M., Indriani, C., Ryan, P. A., O'Neill, S. L., Jewell, N. P. & Simmons, C. P., 1 Jan 2018, In : American Journal of Epidemiology. 187, 9, p. 2021-2028 8 p.

Research output: Contribution to journalArticleResearchpeer-review

37 Citations (Scopus)

Controlling vector-borne diseases by releasing modified mosquitoes

Flores, H. A. & O'Neill, S. L., 1 Aug 2018, In : Nature Reviews Microbiology. 16, 8, p. 508-518 11 p.

Research output: Contribution to journalReview ArticleResearchpeer-review

8 Citations (Scopus)

Epidemiological, serological, and virological features of dengue in Nha Trang City, Vietnam

Quyen, D. L., Le, N. T., Van Anh, C. T., Nguyen, N. B., Van Hoang, D., Montgomery, J. L., Kutcher, S. C., Le, N. H., Hien, N. T., Kien, D. T. H., Rabaa, M., O'Neill, S. L., Simmons, C. P., Anh, D. D. & Anders, K. L., 2018, In : American Journal of Tropical Medicine and Hygiene. 98, 2, p. 402-409 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Scaled deployment of Wolbachia to protect the community from dengue and other Aedes transmitted arboviruses

O'Neill, S. L., Ryan, P. A., Turley, A. P., Wilson, G., Retzki, K., Iturbe-Ormaetxe, I., Dong, Y., Kenny, N., Paton, C. J., Ritchie, S. A., Brown-Kenyon, J., Stanford, D., Wittmeier, N., Anders, K. L. & Simmons, C. P., 2018, In : Gates Open Research. 2, 27 p., 36.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
3 Citations (Scopus)

Survival analysis with time-dependent covariates subject to missing data or measurement error: Multiple Imputation for Joint Modeling (MIJM)

Moreno-Betancur, M., Carlin, J. B., Brilleman, S. L., Tanamas, S. K., Peeters, A. & Wolfe, R., 1 Oct 2018, In : Biostatistics. 19, 4, p. 479-496 18 p.

Research output: Contribution to journalArticleResearchpeer-review

8 Citations (Scopus)

The AWED trial (Applying Wolbachia to Eliminate Dengue) to assess the efficacy of Wolbachia-infected mosquito deployments to reduce dengue incidence in Yogyakarta, Indonesia: Study protocol for a cluster randomised controlled trial

Anders, K. L., Indriani, C., Ahmad, R. A., Tantowijoyo, W., Arguni, E., Andari, B., Jewell, N. P., Rances, E., O'Neill, S. L., Simmons, C. P. & Utarini, A., 31 May 2018, In : Trials. 19, 1, 16 p., 302.

Research output: Contribution to journalArticleOtherpeer-review

13 Citations (Scopus)

Viral genetic diversity and protective efficacy of a tetravalent dengue vaccine in two phase 3 trials

Juraska, M., Magaret, C. A., Shao, J., Carpp, L. N., Fiore-Gartland, A. J., Benkeser, D., Girerd-Chambaz, Y., Langevin, E., Frago, C., Guy, B., Jackson, N., Hue, K. D. T., Simmons, C. P., Edlefsen, P. T. & Gilbert, P. B., 4 Sep 2018, In : Proceedings of the National Academy of Sciences. 115, 36, p. E8378-E8387 10 p.

Research output: Contribution to journalArticleResearchpeer-review

10 Citations (Scopus)

Wolbachia infection alters the relative abundance of resident bacteria in adult Aedes aegypti mosquitoes, but not larvae

Audsley, M. D., Seleznev, A., Joubert, D. A., Woolfit, M., O'Neill, SL. & McGraw, E. A., 1 Jan 2018, In : Molecular Ecology. 27, 1, p. 297-309 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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23 Citations (Scopus)

Zika vaccines and therapeutics: Landscape analysis and challenges ahead

Wilder-Smith, A., Vannice, K., Durbin, A., Hombach, J., Thomas, S. J., Thevarjan, I. & Simmons, C. P., 6 Jun 2018, In : BMC Medicine. 16, 1, 15 p., 84.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2017
3 Citations (Scopus)

A highly stable blood meal alternative for rearing Aedes and Anopheles mosquitoes

Baughman, T., Peterson, C., Ortega, C., Preston, S. R., Paton, C., Williams, J., Guy, A., Omodei, G., Johnson, B., Williams, H., O'Neill, S. L., Ritchie, S. A., Dobson, S. L. & Madan, D., Dec 2017, In : PLoS Neglected Tropical Diseases. 11, 12, p. e0006142 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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21 Citations (Scopus)

Comparison of stable and transient Wolbachia infection models in Aedes aegypti to block dengue and West Nile viruses

Joubert, D. A. & O’Neill, S. L., 4 Jan 2017, In : PLoS Neglected Tropical Diseases. 11, 1, 14 p., e0005275.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
23 Citations (Scopus)

Field- and clinically derived estimates of Wolbachia-mediated blocking of dengue virus transmission potential in Aedes aegypti mosquitoes

Carrington, L. B., Tran, B. C. N., Le, N. T. H., Luong, T. T. H., Nguyen, T. T., Nguyen, P. T., Chau, N. V. V., Nguyen, H. T. C., Vu, T. T., Vo, L. T., Le, D. T., Vu, N. T., Nguyen, G. T., Luu, H. Q., Dang, A. D., Hurst, T. P., O’Neill, S. L., Tran, V. T., Kien, D. T. H., Nguyen, N. M. & 3 others, Wolbers, M., Wills, B. & Simmons, C. P., 9 Jan 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 2, p. 361-366 6 p.

Research output: Contribution to journalArticleResearchpeer-review

63 Citations (Scopus)

Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes aegypti

Schmidt, T. L., Barton, N. H., Rašić, G., Turley, A. P., Montgomery, B. L., Iturbe-Ormaetxe, I., Cook, P. E., Ryan, P. A., Ritchie, S. A., Hoffmann, A. A., O’Neill, S. L. & Turelli, M., 30 May 2017, In : PLoS Biology. 15, 5, 28 p., e2001894.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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20 Citations (Scopus)

Novel Wolbachia-transinfected Aedes aegypti mosquitoes possess diverse fitness and vector competence phenotypes

Fraser, J. E., De Bruyne, J. T., Iturbe-Ormaetxe, I., Stepnell, J., Burns, R. L., Flores, H. A. & O’Neill, S. L., 1 Dec 2017, In : PLoS Pathogens. 13, 12, 19 p., e1006751.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
6 Citations (Scopus)

Screening of Wolbachia Endosymbiont Infection in Aedes aegypti Mosquitoes Using Attenuated Total Reflection Mid-Infrared Spectroscopy

Khoshmanesh, A., Christensen, D., Perez-Guaita, D., Iturbe-Ormaetxe, I., O'Neill, S. L., McNaughton, D. & Wood, B. R., 16 May 2017, In : Analytical Chemistry. 89, 10, p. 5285-5293 9 p.

Research output: Contribution to journalArticleResearchpeer-review

10 Citations (Scopus)

The elimination of the dengue vector, Aedes aegypti, from Brisbane, Australia: The role of surveillance, larval habitat removal and policy

Trewin, B. J., Darbro, J. M., Jansen, C. C., Schellhorn, N. A., Zalucki, M. P., Hurst, T. P. & Devine, G. J., 1 Aug 2017, In : PLoS Neglected Tropical Diseases. 11, 8, 23 p., e0005848.

Research output: Contribution to journalArticleResearchpeer-review

23 Citations (Scopus)

The RNAi pathway plays a small part in Wolbachia-mediated blocking of dengue virus in mosquito cells

Terradas, G., Joubert, D. A. & McGraw, E. A., 6 Mar 2017, In : Scientific Reports. 7, 13 p., 43847.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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2016
7 Citations (Scopus)

A native Wolbachia endosymbiont does not limit dengue virus infection in the mosquito Aedes notoscriptus (Diptera: Culicidae)

Skelton, E., Rancès, E., Frentiu, F. D., Kusmintarsih, E. S., Iturbe-Ormaetxe, I., Caragata, E. P., Woolfit, M. & O'Neill, S. L., 1 Mar 2016, In : Journal of Medical Entomology. 53, 2, p. 401-408 8 p.

Research output: Contribution to journalArticleResearchpeer-review

16 Citations (Scopus)

The effect of temperature on Wolbachia-mediated dengue virus blocking in Aedes aegypti

Ye, Y. H., Carrasco, A. M., Dong, Y., Sgro, C. M. & McGraw, E. A., 1 Apr 2016, In : American Journal of Tropical Medicine and Hygiene. 94, 4, p. 812-819 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2015
1 Citation (Scopus)

Erratum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus (Nature Immunology (2015) 16 (170-177))

Dejnirattisai, W., Wongwiwat, W., Supasa, S., Zhang, X., Dai, X., Rouvinsky, A., Jumnainsong, A., Edwards, C., Quyen, N. T. H., Duangchinda, T., Grimes, J. M., Tsai, W. Y., Lai, C. Y., Wang, W. K., Malasit, P., Farrar, J., Simmons, C. P., Zhou, Z. H., Rey, F. A., Mongkolsapaya, J. & 1 others, Screaton, G. R., 28 May 2015, In : Nature Immunology. 16, 5, p. 544 1 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

7 Citations (Scopus)

Erratum: A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus (Nat. Immunol. (2015) 16 (171-177))

Dejnirattisai, W., Wongwiwat, W., Supasa, S., Zhang, X., Dai, X., Rouvinsky, A., Jumnainsong, A., Edwards, C., Quyen, N. T. H., Duangchinda, T., Grimes, J. M., Tsai, W. Y., Lai, C. Y., Wang, W. K., Malasit, P., Farrar, J., Simmons, C. P., Zhou, Z. H., Rey, F. A., Mongkolsapaya, J. & 1 others, Screaton, G. R., 20 Jul 2015, In : Nature Immunology. 16, 7, p. 785 1 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

Malaria: Targeting host kinases

John von Freyend, S., Morahan, B. J., Semblat, J. P., Sicard, A., Hooker, D. J., Adderley, J. D. & Doerig, C. D., 2015.

Research output: Contribution to conferencePosterOther

3 Citations (Scopus)

The dengue stopper

O'Neill, S., Jun 2015, In : Scientific American. 312, 6, p. 72-77 6 p.

Research output: Contribution to journalArticleOther

2014
6 Citations (Scopus)

Biological control of dengue and wolbachia-based strategies

Frentiu, F. D., Walker, T. & O'Neil, S. L., 29 Aug 2014, Dengue and Dengue Hemorrhagic Fever: 2nd Edition. Gubler, D. J., Ooi, E. E., Vasudevan, S. & Farrar, J. (eds.). 2nd ed. Wallingford UK: CABI, p. 537-547 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter (Book)Otherpeer-review

Comment on: A case of certolizumab-induced interstitial lung disease in a patient with rheumatoid arthritis: Reply

Glaspole, I., Hoy, R. & Ryan, P., 2014, In : Rheumatology. 53, 6, p. 1155 1 p., keu144.

Research output: Contribution to journalLetterOtherpeer-review

Hijacking of a red blood cell signalling pathway by the malaria parasite Plasmodium falciparum

John von Freyend, S., Semblat, J. P., Hooker, D. J., Sicard, A. & Doerig, C. D., 2014.

Research output: Contribution to conferencePosterOther

Modulation of activity and localization of host erythrocyte kinases following infection with Plasmodium falciparum

John von Freyend, S., Semblat, J. P., Hooker, D. J., Sicard, A. & Doerig, C. D., 2014.

Research output: Contribution to conferencePosterOther

Red blood cell proteins as targets for anti-malarial drug development

John von Freyend, S., Hooker, D. J., Gil Carvalho, A. T., Semblat, J. P., Sicard, A. & Doerig, C. D., 2014.

Research output: Contribution to conferencePosterOther

2013
13 Citations (Scopus)

A case of certolizumab-induced interstitial lung disease in a patient with rheumatoid arthritis

Glaspole, I. N., Hoy, R. F. & Ryan, P. F., Dec 2013, In : Rheumatology. 52, 12, p. 2302-2304 3 p., ket175.

Research output: Contribution to journalLetterOtherpeer-review

2012

Erratum: Memory T cells established by seasonal human influenza A infection cross-react with avian influenza A (H5N1) in healthy individuals (Journal of Clinical Investigation (2008) 118, 10, (3478-3490) doi:10.1172/JCI32460)

Lee, L. Y. H., Ha, D. L. A., Simmons, C., de Jong, M. D., Chau, N. V. V., Schumacher, R., Peng, Y. C., McMichael, A. J., Farrar, J., Smith, G. L., Townsend, A. R. M., Askonas, B. A., Rowland-Jones, S. L. & Dong, T., 1 Nov 2012, In : Journal of Clinical Investigation. 122, 11, p. 4301 1 p.

Research output: Contribution to journalComment / DebateOtherpeer-review

2010
44 Citations (Scopus)

The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of kathmandu

Karkey, A., Arjyal, A., Anders, K. L., Boni, M. F., Dongol, S., Koirala, S., My, P. V. T., Nga, T. V. T., Clements, A. C. A., Holt, K. E., Duy, P. T., Day, J. N., Campbel, J. I., Dougan, G., Dolecek, C., Farrar, J., Basnyat, B. & Baker, S., 9 Dec 2010, In : PLoS ONE. 5, 11, e13988.

Research output: Contribution to journalArticleResearchpeer-review

2008
105 Citations (Scopus)

Decision tree algorithms predict the diagnosis and outcome of dengue fever in the early phase of illness

Tanner, L., Schreiber, M., Low, J. G. H., Ong, A., Tolfvenstam, T., Lai, Y. L., Ng, L. C., Leo, Y. S., Puong, L. T., Vasudevan, S. G., Simmons, C. P., Hibberd, M. L. & Ooi, E. E., 1 Mar 2008, In : PLoS Neglected Tropical Diseases. 2, 3, e196.

Research output: Contribution to journalArticleResearchpeer-review

116 Citations (Scopus)

Dengue in Vietnamese infants - Results of infection-enhancement assays correlate with age-related disease epidemiology, and cellular immune responses correlate with disease severity

Chau, T. N. B., Quyen, N. T. H., Tran, T. T., Nguyen, M. T., Dang, M. H., Dung, N. T. P., Le, B. L., Nguyen, T. Q., Nguyen, T. H., Hieu, L. T. M., Tran, T. H., Nguyen, T. H., Farrar, J. & Simmons, C. P., 15 Aug 2008, In : Journal of Infectious Diseases. 198, 4, p. 516-524 9 p.

Research output: Contribution to journalArticleResearchpeer-review

92 Citations (Scopus)

Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles

Thuong, N. T. T., Dunstan, S. J., Chau, T. T. H., Thorsson, V., Simmons, C. P., Quyen, N. T. H., Thwaites, G. E., Lan, N. T. N., Hibberd, M., Teo, Y. Y., Seielstad, M., Aderem, A., Farrar, J. J. & Hawn, T. R., 1 Dec 2008, In : PLoS Pathogens. 4, 12, e1000229.

Research output: Contribution to journalArticleResearchpeer-review

32 Citations (Scopus)

Insights into inflammation and influenza

Simmons, C. & Farrar, J., 9 Oct 2008, In : New England Journal of Medicine. 359, 15, p. 1621-1623 3 p.

Research output: Contribution to journalShort SurveyResearchpeer-review

314 Citations (Scopus)

Memory T cells established by seasonal human influenza A infection cross-react with avian influenza A (H5N1) in healthy individuals

Lee, L. Y. H., Ha, D. L. A., Simmons, C., De Jong, M. D., Chau, N. V. V., Schumacher, R., Yan, C. P., McMichael, A. J., Farrar, J. J., Smith, G. L., Townsend, A. R. M., Askonas, B. A., Rowland-Jones, S. & Dong, T., 1 Oct 2008, In : Journal of Clinical Investigation. 118, 10, p. 3478-3490 13 p.

Research output: Contribution to journalArticleResearchpeer-review

23 Citations (Scopus)

Preservation of a critical epitope core region is associated with the high degree of flaviviral cross-reactivity exhibited by a dengue-specific CD4+ T cell clone

Moran, E., Simmons, C., Chau, N. V., Luhn, K., Wills, B., Dung, N. P., Thao, L. T. T., Hien, T. T., Wills, B., Dung, N. P., Thao, L. T. T., Hien, T. T., Farrar, J., Rowland-Jones, S. & Dong, T., 1 Apr 2008, In : European Journal of Immunology. 38, 4, p. 1050-1057 8 p.

Research output: Contribution to journalArticleResearchpeer-review

2007
120 Citations (Scopus)

Editorial: Towards a global dengue research agenda

Farrar, J., Focks, D., Gubler, D., Barrera, R., Guzman, M. G., Simmons, C., Kalayanarooj, S., Lum, L., McCall, P. J., Lloyd, L., Horstick, O., Dayal-Drager, R., Nathan, M. B. & Kroeger, A., 1 Jun 2007, In : Tropical Medicine and International Health. 12, 6, p. 695-699 5 p.

Research output: Contribution to journalEditorialResearchpeer-review

61 Citations (Scopus)

High pro-inflammatory cytokine secretion and loss of high avidity cross-reactive cytotoxic T-cells during the course of secondary dengue virus infection

Dong, T., Moran, E., Vinh Chau, N. V., Simmons, C., Luhn, K., Peng, Y., Wills, B., Phuong Dung, N., Thi Thu Thao, L., Hien, T. T., McMichael, A., Farrar, J. & Rowland-Jones, S., 5 Dec 2007, In : PLoS ONE. 2, 12, e1192.

Research output: Contribution to journalArticleResearchpeer-review

93 Citations (Scopus)

Increased frequencies of CD4+CD25high regulatory T cells in acute dengue infection

Lühn, K., Simmons, C. P., Moran, E., Dung, N. T. P., Chau, T. N. B., Quyen, N. T. H., Thao, L. T. T., Van Ngoc, T., Nguyen, M. D., Wills, B., Farrar, J., McMichael, A. J., Dong, T. & Rowland-Jones, S., 1 May 2007, In : Journal of Experimental Medicine. 204, 5, p. 979-985 7 p.

Research output: Contribution to journalArticleResearchpeer-review

108 Citations (Scopus)

Maternal antibody and viral factors in the pathogenesis of dengue virus in infants

Simmons, C. P., Chau, T. N. B., Tran, T. T., Nguyen, M. T., Dang, M. H., Nguyen, T. T., Le, B. L., Nguyen, T. Q., Nguyen, T. H., Tran, T. H., McElnea, C., Young, P., Whitehead, S., Nguyen, T. H. & Farrar, J., 1 Aug 2007, In : Journal of Infectious Diseases. 196, 3, p. 416-424 9 p.

Research output: Contribution to journalArticleResearchpeer-review

128 Citations (Scopus)

Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever

Simmons, C. P., Popper, S., Dolocek, C., Chan, T. N. B., Griffiths, M., Dung, N. T. P., Long, T. H., Hoang, D. M., Chau, N. V., Thao, L. T. T., Hien, T. T., Relman, D. A. & Farrar, J., 15 Apr 2007, In : Journal of Infectious Diseases. 195, 8, p. 1097-1107 11 p.

Research output: Contribution to journalArticleResearchpeer-review