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2017
3 Citations (Scopus)

The middle fragment of Helicobacter pylori CagA induces Actin rearrangement and triggers its own uptake into gastric epithelial cells

Tohidpour, A., Gorrell, R. J., Roujeinikova, A. & Kwok, T., 1 Aug 2017, In : Toxins. 9, 8, 16 p., 237.

Research output: Contribution to journalArticleResearchpeer-review

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10 Citations (Scopus)

The molecular basis for peptide repertoire selection in the human leucocyte antigen (HLA) C∗06: 02 molecule

Mobbs, J. I., Illing, P. T., Dudek, N. L., Brooks, A. G., Baker, D. G., Purcell, A. W., Rossjohn, J. & Vivian, J. P., 20 Oct 2017, In : Journal of Biological Chemistry. 292, 42, p. 17203-17215 13 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)
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7 Citations (Scopus)

The Structure of a Conserved Domain of TamB Reveals a Hydrophobic β Taco Fold

Josts, I., Stubenrauch, C. J., Vadlamani, G., Mosbahi, K., Walker, D., Lithgow, T. & Grinter, R., 5 Dec 2017, In : Structure. 25, 12, p. 1898-1906 9 p.

Research output: Contribution to journalArticleResearchpeer-review

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5 Citations (Scopus)

The transcriptional repressor HIC1 regulates intestinal immune homeostasis

Burrows, K., Antignano, F., Bramhall, M., Chenery, A., Scheer, S., Korinek, V., Underhill, T. M. & Zaph, C., 1 Nov 2017, In : Mucosal Immunology. 10, 6, p. 1518-1528 11 p.

Research output: Contribution to journalArticleResearchpeer-review

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7 Citations (Scopus)

Vancomycin-intermediate Staphylococcus aureus isolates are attenuated for virulence when compared with susceptible progenitors

Cameron, D. R., Lin, Y-H., Trouillet-Assant, S., Tafani, V., Kostoulias, X., Mouhtouris, E., Skinner, N., Visvanathan, K., Baines, S. L., Howden, B., Monk, I. R., Laurent, F., Stinear, T. P., Howden, B. P. & Peleg, A. Y., Oct 2017, In : Clinical Microbiology and Infection. 23, 10, p. 767-773 7 p.

Research output: Contribution to journalArticleResearchpeer-review

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2018

A laboratory competency examination in microbiology

Wang, J. T. H., Huston, W. M., Johanesen, P., Lloyd, M. & Waller, K. L., 1 Oct 2018, In : FEMS Microbiology Letters. 365, 20, 9 p., fny224.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

A Metabolic Checkpoint for the Yeast-to-Hyphae Developmental Switch Regulated by Endogenous Nitric Oxide Signaling

Koch, B., Barugahare, A. A., Lo, T. L., Huang, C., Schittenhelm, R. B., Powell, D. R., Beilharz, T. H. & Traven, A., 20 Nov 2018, In : Cell Reports. 25, 8, p. 2244-2258 15 p.

Research output: Contribution to journalArticleResearchpeer-review

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12 Citations (Scopus)

An insight into intestinal mucosal microbiota disruption after stroke

Stanley, D., Moore, R. J. & Wong, C. H. Y., 1 Dec 2018, In : Scientific Reports. 8, 1, 12 p., 568.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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1 Citation (Scopus)

An investigation into the Omp85 protein BamK in hypervirulent Klebsiella pneumoniae, and its role in outer membrane biogenesis

Torres, V. V. L., Heinz, E., Stubenrauch, C. J., Wilksch, J. J., Cao, H., Yang, J., Clements, A., Dunstan, R. A., Alcock, F., Webb, C. T., Dougan, G., Strugnell, R. A., Hay, I. D. & Lithgow, T., Sep 2018, In : Molecular Microbiology. 109, 5, p. 584-599 16 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Annexin V-containing cubosomes for targeted early detection of apoptosis in degenerative retinal tissue

Ding, Y., Chow, S. H., Liu, G. S., Wang, B., Lin, T. W., Hsu, H. Y., Duff, A. P., Le Brun, A. P. & Shen, H. H., 2018, In : Journal of Materials Chemistry B. 6, 46, p. 7652-7661 10 p.

Research output: Contribution to journalArticleResearchpeer-review

11 Citations (Scopus)

An overview on the identification of MAIT cell antigens

Kjer-Nielsen, L., Corbett, A. J., Chen, Z., Liu, L., Mak, J. Y., Godfrey, D. I., Rossjohn, J., Fairlie, D. P., Mccluskey, J. & Eckle, S. B., Jul 2018, In : Immunology and Cell Biology. 96, 6, p. 573-587 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Assessing the role of the T-box transcription factor Eomes in B cell differentiation during either Th1 or Th2 cell-biased responses

Cooper, L., Hailes, L., Sheikh, A., Zaph, C., Belz, G. T., Groom, J. R. & Good-Jacobson, K. L., 6 Dec 2018, In : PLoS ONE. 13, 12, 11 p., e0208343.

Research output: Contribution to journalArticleResearchpeer-review

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20 Citations (Scopus)

A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands

Faridi, P., Li, C., Ramarathinam, S. H., Vivian, J. P., Illing, P. T., Mifsud, N. A., Ayala, R., Song, J., Gearing, L. J., Hertzog, P. J., Ternette, N., Rossjohn, J., Croft, N. P. & Purcell, A. W., 12 Oct 2018, In : Science Immunology. 3, 28, 12 p., eaar3947.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

A System Pharmacology Study for Deciphering Anti Depression Activity of Nardostachys jatamansi

Jalali, S., Zarrinhaghighi, A., Sadraei, S., Ghasemi, Y., Sakhteman, A. & Faridi, P., 1 Jan 2018, In : Current Drug Metabolism. 19, 5, p. 469-476 8 p.

Research output: Contribution to journalArticleResearchpeer-review

30 Citations (Scopus)

Bastion6: A bioinformatics approach for accurate prediction of type VI secreted effectors

Wang, J., Yang, B., Leier, A., Marquez-Lago, T., Hayashida, M., Rocker, A., Zhang, Y., Akutsu, T., Chou, K-C., Strugnell, R. A., Song, J. & Lithgow, T., 1 Jan 2018, In : Bioinformatics. 34, 15, p. 2546-2555 10 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Broad CD8+ T cell cross-recognition of distinct influenza A strains in humans

Grant, E. J., Josephs, T. M., Loh, L., Clemens, E. B., Sant, S., Bharadwaj, M., Chen, W., Rossjohn, J., Gras, S. & Kedzierska, K., 21 Dec 2018, In : Nature Communications. 9, 1, 16 p., 5427.

Research output: Contribution to journalArticleResearchpeer-review

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7 Citations (Scopus)

CD8+ T Cell Activation Leads to Constitutive Formation of Liver Tissue-Resident Memory T Cells that Seed a Large and Flexible Niche in the Liver

Holz, L. E., Prier, J. E., Freestone, D., Steiner, T. M., English, K., Johnson, D. N., Mollard, V., Cozijnsen, A., Davey, G. M., Godfrey, D. I., Yui, K., Mackay, L. K., Lahoud, M. H., Caminschi, I., McFadden, G. I., Bertolino, P., Fernandez-Ruiz, D. & Heath, W. R., 2 Oct 2018, In : Cell Reports. 25, 1, p. 68-79 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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Characteristic and mechanism of immobilization effect of Staphylococcus aureus on human spermatozoa

Li, J., Li, B., Song, J., Liu, H., Bi, W., Dong, G. & Zhou, T., 1 Jun 2018, In : Microbial Pathogenesis. 119, p. 28-34 7 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Characterization of Plasmodium falciparum Atypical Kinase PfPK7- Dependent Phosphoproteome

Pease, B. N., Huttlin, E. L., Jedrychowski, M. P., Dorin-Semblat, D., Sebastiani, D., Segarra, D. T., Roberts, B. F., Chakrabarti, R., Doerig, C., Gygi, S. P. & Chakrabarti, D., 1 Jun 2018, In : Journal of Proteome Research. 17, 6, p. 2112-2123 12 p.

Research output: Contribution to journalArticleResearchpeer-review

13 Citations (Scopus)

Clonally diverse CD38+HLA-DR+CD8+ T cells persist during fatal H7N9 disease

Wang, Z., Zhu, L., Nguyen, T. H. O., Wan, Y., Sant, S., Quiñones-Parra, S. M., Crawford, J. C., Eltahla, A. A., Rizzetto, S., Bull, R. A., Qiu, C., Koutsakos, M., Clemens, E. B., Loh, L., Chen, T., Liu, L., Cao, P., Ren, Y., Kedzierski, L., Kotsimbos, T. & 10 others, McCaw, J. M., La Gruta, N. L., Turner, S. J., Cheng, A. C., Luciani, F., Zhang, X., Doherty, P. C., Thomas, P. G., Xu, J. & Kedzierska, K., 26 Feb 2018, In : Nature Communications. 9, 1, 12 p., 824.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Clostridium perfringens-mediated necrotic enteritis is not influenced by the pre-existing microbiota but is promoted by large changes in the post-challenge microbiota

Lacey, J. A., Stanley, D., Keyburn, A. L., Ford, M., Chen, H., Johanesen, P., Lyras, D. & Moore, R. J., 1 Dec 2018, In : Veterinary Microbiology. 227, p. 119-126 8 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Clostridium sordellii outer spore proteins maintain spore structural integrity and promote bacterial clearance from the gastrointestinal tract

Rabi, R., Larcombe, S., Mathias, R., McGowan, S., Awad, M. & Lyras, D., 18 Apr 2018, In : PLoS Pathogens. 14, 4, 25 p., e1007004.

Research output: Contribution to journalArticleResearchpeer-review

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5 Citations (Scopus)

Clostridium sordellii pathogenicity locus plasmid pCS1-1 encodes a novel clostridial conjugation locus

Vidor, C. J., Watts, T. D., Adams, V., Bulach, D., Couchman, E., Rood, J. I., Fairweather, N. F., Awad, M. & Lyras, D., 16 Jan 2018, In : mBio. 9, 1, 14 p., e01761-17.

Research output: Contribution to journalArticleResearchpeer-review

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4 Citations (Scopus)

Combating Carbapenem-Resistant Acinetobacter baumannii by an Optimized Imipenem-plus-Tobramycin Dosage Regimen: Prospective Validation via Hollow-Fiber Infection and Mathematical Modeling

Landersdorfer, C. B., Yadav, R., Rogers, K. E., Kim, T. H., Shin, B. S., Boyce, J. D., Nation, R. L. & Bulitta, J. B., 1 Apr 2018, In : Antimicrobial Agents and Chemotherapy. 62, 4, 8 p., e02053-17.

Research output: Contribution to journalArticleResearchpeer-review

Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms

Wei, L., Hu, J., Li, F., Song, J., Su, R. & Zou, Q., 2018, (Accepted/In press) In : Briefings in Bioinformatics. 14 p., bby107.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Comparative analysis of phosphoethanolamine transferases involved in polymyxin resistance across 10 clinically relevant Gram-negative bacteria

Huang, J., Zhu, Y., Han, M., Li, M., Song, J., Velkov, T., Li, C. & Li, J., 1 Apr 2018, In : International Journal of Antimicrobial Agents. 51, 4, p. 586-593 8 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Complete genome of Aedes aegypti anphevirus in the Aag2 mosquito cell line

Di Giallonardo, F., Audsley, M. D., Shi, M., Young, P. R., McGraw, E. A. & Holmes, E. C., 1 Jun 2018, In : Journal of General Virology. 99, 6, p. 832-836 5 p., 001079.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Composite particle formulations of colistin and meropenem with improved in-vitro bacterial killing and aerosolization for inhalation

Mangal, S., Park, H., Zeng, L., Yu, H. H., Lin, Y., Velkov, T., Denman, J. A., Zemlyanov, D., Li, J. & Zhou, Q. T., 5 Sep 2018, In : International Journal of Pharmaceutics. 548, 1, p. 443-453 11 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq)

Guérillot, R., Li, L., Baines, S., Howden, B., Schultz, M. B., Seemann, T., Monk, I., Pidot, S. J., Gao, W., Giulieri, S., Gonçalves da Silva, A., D'Agata, A., Tomita, T., Peleg, A. Y., Stinear, T. P. & Howden, B. P., 31 Aug 2018, In : Genome Medicine. 10, 1, 15 p., 63.

Research output: Contribution to journalArticleOtherpeer-review

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5 Citations (Scopus)

Concurrent host-pathogen transcriptional responses in a clostridium perfringens murine myonecrosis infection

Low, L-Y., Harrison, P. F., Gould, J., Powell, D. R., Choo, J. M., Forster, S. C., Chapman, R., Gearing, L. J., Cheung, J. K., Hertzog, P. & Rood, J. I., 1 Mar 2018, In : mBio. 9, 2, 15 p., e00473-18.

Research output: Contribution to journalArticleResearchpeer-review

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6 Citations (Scopus)

Crystal structure of TcpK in complex with oriT DNA of the antibiotic resistance plasmid pCW3

Traore, D. A. K., Wisniewski, J. A., Flanigan, S. F., Conroy, P. J., Panjikar, S., Mok, Y-F., Lao, C., Griffin, M. D. W., Adams, V., Rood, J. I. & Whisstock, J. C., 13 Sep 2018, In : Nature Communications. 9, 1, 11 p., 3732.

Research output: Contribution to journalArticleResearchpeer-review

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6 Citations (Scopus)

Determination of the small RNA GcvB regulon in the Gram-negative bacterial pathogen Pasteurella multocida and identification of the GcvB seed binding region

Gulliver, E. L., Wright, A., Deveson, D., Megroz, M., Kleifeld, O., Schittenhelm, R. B., Powell, D. R., Seemann, T., Bulitta, J. B., Harper, M. & Boyce, J. D., 1 May 2018, In : Rna-A Publication of the Rna Society. 24, 5, p. 704-720 17 p.

Research output: Contribution to journalArticleResearchpeer-review

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12 Citations (Scopus)

Differing roles of CD1d2 and CD1d1 proteins in type I natural killer T cell development and function

Sundararaj, S., Zhang, J., Krovi, S. H., Bedel, R., Tuttle, K. D., Veerapen, N., Besra, G. S., Khandokar, Y., Praveena, T., Le Nours, J., Matsuda, J. L., Rossjohn, J. & Gapin, L., 6 Feb 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 6, p. E1204-E1213 10 p.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide

Chan, K. F., Gully, B. S., Gras, S., Beringer, D. X., Kjer-Nielsen, L., Cebon, J., McCluskey, J., Chen, W. & Rossjohn, J., 1 Dec 2018, In : Nature Communications. 9, 1, 13 p., 1026.

Research output: Contribution to journalArticleResearchpeer-review

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Diverse bacterial species contribute to antibiotic-associated diarrhoea and gastrointestinal damage

Larcombe, S., Hutton, M. L., Riley, T. V., Abud, H. E. & Lyras, D., Nov 2018, In : Journal of Infection. 77, 5, p. 417-426 10 p.

Research output: Contribution to journalArticleResearchpeer-review

6 Citations (Scopus)

Dual Modifications of α-Galactosylceramide Synergize to Promote Activation of Human Invariant Natural Killer T Cells and Stimulate Anti-tumor Immunity

Chennamadhavuni, D., Saavedra-Avila, N. A., Carreño, L. J., Guberman-Pfeffer, M. J., Arora, P., Yongqing, T., Koay, H. F., Godfrey, D. I., Keshipeddy, S., Richardson, S. K., Sundararaj, S., Lo, J. H., Wen, X., Gascón, J. A., Yuan, W., Rossjohn, J., Le Nours, J., Porcelli, S. A. & Howell, A. R., 17 May 2018, In : Cell Chemical Biology. 25, 5, p. 571-584 14 p.

Research output: Contribution to journalArticleResearchpeer-review

87 Citations (Scopus)

Effect of piperacillin-tazobactam vs meropenem on 30-day mortality for patients with e coli or Klebsiella pneumoniae bloodstream infection and ceftriaxone resistance

Harris, P. N. A., Tambyah, P. A., Lye, D. C., Mo, Y., Lee, T. H., Yilmaz, M., Alenazi, T. H., Arabi, Y., Falcone, M., Bassetti, M., Righi, E., Rogers, B. A., Kanj, S., Bhally, H., Iredell, J., Mendelson, M., Boyles, T. H., Looke, D., Miyakis, S., Walls, G. & 15 others, Al Khamis, M., Zikri, A., Crowe, A., Ingram, P., Daneman, N., Griffin, P., Athan, E., Lorenc, P., Baker, P., Roberts, L., Beatson, S. A., Peleg, A. Y., Harris-Brown, T., Paterson, D. L. & for the MERINO Trial Investigators and the Australasian Society for Infectious Disease Clinical Research Network (ASID-CRN), 11 Sep 2018, In : JAMA - Journal of the American Medical Association. 320, 10, p. 984-994 11 p.

Research output: Contribution to journalArticleResearchpeer-review

7 Citations (Scopus)

Emergence of high-level colistin resistance in an acinetobacter baumannii clinical isolate mediated by inactivation of the global regulator H-NS

Lucas, D. D., Crane, B., Wright, A., Han, M-L., Moffatt, J., Bulach, D., Gladman, S. L., Powell, D., Aranda, J., Seemann, T., Machado, D., Pacheco, T., Marques, T., Viveiros, M., Nation, R., Li, J., Harper, M. & Boyce, J. D., 1 Jul 2018, In : Antimicrobial Agents and Chemotherapy. 62, 7, 17 p., e02442-17.

Research output: Contribution to journalArticleResearchpeer-review

5 Citations (Scopus)

Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites

Fang, H., Gomes, A. R., Klages, N., Pino, P., Maco, B., Walker, E. M., Zenonos, Z. A., Angrisano, F., Baum, J., Doerig, C., Baker, D. A., Billker, O. & Brochet, M., 12 Oct 2018, In : Nature Communications. 9, 1, 14 p., 4248.

Research output: Contribution to journalArticleResearchpeer-review

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9 Citations (Scopus)

Evidence for viral interference and cross-reactive protective immunity between influenza B virus lineages

Laurie, K. L., Horman, W., Carolan, L. A., Chan, K. F., Layton, D., Bean, A., Vijaykrishna, D., Reading, P. C., McCaw, J. M. & Barr, I. G., 15 Feb 2018, In : Journal of Infectious Diseases. 217, 4, p. 548-559 12 p.

Research output: Contribution to journalArticleResearchpeer-review

40 Citations (Scopus)

Expansion of the Clostridium perfringens toxin-based typing scheme

Rood, J. I., Adams, V., Lacey, J. A., Lyras, D., McClane, B. A., Melville, S. B., Moore, R. J., Popoff, M. R., Sarker, M. R., Songer, J. G., Uzal, F. A. & Van Immerseel, F., 1 Oct 2018, In : Anaerobe. 53, p. 5-10 6 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Flow cytometric clinical immunomonitoring using peptide-MHC class II tetramers: Optimization of methods and protocol development

Jansen, D. T. S. L., Ramnoruth, N., Loh, K. L., Rossjohn, J., Reid, H. H., Nel, H. J. & Thomas, R., 22 Jan 2018, In : Frontiers in Immunology. 9, 10 p., 8.

Research output: Contribution to journalArticleResearchpeer-review

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2 Citations (Scopus)

FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants

Grinter, R., Hay, I. D., Song, J., Wang, J., Teng, D., Dhanesakaran, V., Wilksch, J. J., Davies, M. R., Littler, D., Beckham, S. A., Henderson, I. R., Strugnell, R. A., Dougan, G. & Lithgow, T., 2 Aug 2018, In : PLoS Biology. 16, 8, 21 p., e2006026.

Research output: Contribution to journalArticleResearchpeer-review

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5 Citations (Scopus)

GPR65 inhibits experimental autoimmune encephalomyelitis through CD4+ T cell independent mechanisms that include effects on iNKT cells

Wirasinha, R. C., Vijayan, D., Smith, N. J., Parnell, G. P., Swarbrick, A., Brink, R., King, C., Stewart, G., Booth, D. R. & Batten, M., 1 Feb 2018, In : Immunology and Cell Biology. 96, 2, p. 128-136 9 p.

Research output: Contribution to journalArticleResearchpeer-review

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9 Citations (Scopus)

Helicobacter pylori type IV secretion system and its adhesin subunit, CagL, mediate potent inflammatory responses in primary human endothelial cells

Tafreshi, M., Guan, J., Gorrell, R. J., Chew, N., Xin, V., Deswaerte, V., Rohde, M., Daly, R. J., Peek Jr, R. M., Jenkins, B. J., Davies, E. M. & Kwok, T., 6 Feb 2018, In : Frontiers in Cellular and Infection Microbiology. 8, FEB, 15 p., 22.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Heterologous protection elicited by a live, attenuated, Leptospira vaccine

Murray, G. L., Simawaranon, T., Kaewraemruaen, C., Adler, B. & Sermswan, R. W., 1 Sep 2018, In : Veterinary Microbiology. 223, p. 47-50 4 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

HIC1 links retinoic acid signalling to group 3 innate lymphoid cell-dependent regulation of intestinal immunity and homeostasis

Burrows, K., Antignano, F., Chenery, A., Bramhall, M., Korinek, V., Underhill, T. M. & Zaph, C., 22 Feb 2018, In : PLoS Pathogens. 14, 2, 15 p., e1006869.

Research output: Contribution to journalArticleResearchpeer-review

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2 Citations (Scopus)

HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome

Illing, P. T., Pymm, P., Croft, N. P., Hilton, H. G., Jojic, V., Han, A. S., Mendoza, J. L., Mifsud, N. A., Dudek, N. L., McCluskey, J., Parham, P., Rossjohn, J., Vivian, J. P. & Purcell, A. W., 8 Nov 2018, In : Nature Communications. 9, 1, 13 p., 4693.

Research output: Contribution to journalArticleResearchpeer-review

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3 Citations (Scopus)

Identification of large cryptic plasmids in Clostridioides (Clostridium) difficile

Amy, J., Bulach, D., Knight, D., Riley, T., Johanesen, P. & Lyras, D., 1 Mar 2018, In : Plasmid. 96-97, p. 25-38 14 p.

Research output: Contribution to journalArticleResearchpeer-review