Research Output 1970 2019

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2017
3 Citations (Scopus)

Analysis of steric effects in DamID profiling of transcription factor target genes

Ramialison, M., Waardenberg, A. J., Schonrock, N., Doan, T., de Jong, D., Bouveret, R. & Harvey, R. P., 1 Mar 2017, In : Genomics. 109, 2, p. 75-82 8 p.

Research output: Contribution to journalArticleResearchpeer-review

24 Citations (Scopus)

An atypical role for the myeloid receptor Mincle in central nervous system injury

Arumugam, T. V., Manzanero, S., Furtado, M., Biggins, P. J., Hsieh, Y. H., Gelderblom, M., MacDonald, K. P. A., Salimova, E., Li, Y. I., Korn, O., Dewar, D., Macrae, I. M., Ashman, R. B., Tang, S-C., Rosenthal, N. A., Ruitenberg, M. J., Magnus, T. & Wells, C. A., 1 Jun 2017, In : Journal of Cerebral Blood Flow and Metabolism. 37, 6, p. 2098-2111 14 p.

Research output: Contribution to journalArticleResearchpeer-review

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22 Citations (Scopus)

Assessing the Safety of Human Pluripotent Stem Cells and Their Derivatives for Clinical Applications

Andrews, P. W., Ben-David, U., Benvenisty, N., Coffey, P., Eggan, K., Knowles, B. B., Nagy, A., Pera, M., Reubinoff, B., Rugg-Gunn, P. J. & Stacey, G. N., 11 Jul 2017, In : Stem Cell Reports. 9, 1, 4 p.

Research output: Contribution to journalArticleOtherpeer-review

12 Citations (Scopus)

Biocompatibility of Photopolymers in 3D Printing

Alifui-Segbaya, F., Varma, S., Lieschke, G. J. & George, R., 1 Dec 2017, In : 3D Printing and Additive Manufacturing. 4, 4, p. 185-191 7 p.

Research output: Contribution to journalArticleResearchpeer-review

5 Citations (Scopus)

Cardiac regeneration: All work and no repair?

Kennedy-Lydon, T. M. & Rosenthal, N., 29 Mar 2017, In : Science Translational Medicine. 9, 383, 5 p., eaad9019.

Research output: Contribution to journalArticleOtherpeer-review

16 Citations (Scopus)

Cell Type of Origin Dictates the Route to Pluripotency

Nefzger, C. M., Rossello, F. J., Chen, J., Liu, X., Knaupp, A. S., Firas, J., Paynter, J. M., Pflueger, J., Buckberry, S., Lim, S. M., Williams, B., Alaei, S., Faye-Chauhan, K., Petretto, E., Nilsson, S. K., Lister, R., Ramialison, M., Powell, D. R., Rackham, O. J. L. & Polo, J. M., 5 Dec 2017, In : Cell Reports. 21, 10, p. 2649-2660 12 p.

Research output: Contribution to journalArticleResearchpeer-review

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27 Citations (Scopus)

Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes

Witzel, M., Petersheim, D., Fan, Y., Bahrami, E., Racek, T., Rohlfs, M., Puchałka, J., Mertes, C., Gagneur, J., Ziegenhain, C., Enard, W., Stray-Pedersen, A., Arkwright, P. D., Abboud, M. R., Pazhakh, V., Lieschke, G. J., Krawitz, P. M., Dahlhoff, M., Schneider, M. R., Wolf, E. & 4 others, Horny, H. P., Schmidt, H., Schäffer, A. A. & Klein, C., 1 May 2017, In : Nature Genetics. 49, 5, p. 742-752 11 p.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)
Open Access
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26 Citations (Scopus)

Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming

Liu, X., Nefzger, C. M., Rossello, F. J., Chen, J., Knaupp, A. S., Firas, J., Ford, E., Pflueger, J., Paynter, J. M., Chy, H. S., O'Brien, C. M., Huang, C., Mishra, K., Hodgson-Garms, M., Jansz, N., Williams, S. M., Blewitt, M. E., Nilsson, S. K., Schittenhelm, R. B., Laslett, A. L. & 2 others, Lister, R. & Polo, J. M., 31 Oct 2017, In : Nature Methods. 14, 11, p. 1055-1062 8 p.

Research output: Contribution to journalArticleResearchpeer-review

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13 Citations (Scopus)

Congenital valvular defects associated with deleterious mutations in the PLD1 gene

Ta-Shma, A., Zhang, K., Salimova, E., Zernecke, A., Sieiro-Mosti, D., Stegner, D., Furtado, M., Shaag, A., Perles, Z., Nieswandt, B., Rein, A. J. J. T., Rosenthal, N., Neiman, A. M. & Elpeleg, O., 1 Apr 2017, In : Journal of Medical Genetics. 54, 4, p. 278-286 9 p.

Research output: Contribution to journalArticleResearchpeer-review

24 Citations (Scopus)

Cre-loxP-Mediated Recombination: General Principles and Experimental Considerations

McLellan, M. A., Rosenthal, N. A. & Pinto, A. R., 2 Mar 2017, In : Current Protocols in Mouse Biology. 7, 1, p. 1-12 12 p.

Research output: Contribution to journalArticleResearchpeer-review

23 Citations (Scopus)

Cytoprotection, proliferation and epidermal differentiation of adipose tissue-derived stem cells on emu oil based electrospun nanofibrous mat

Pilehvar-Soltanahmadi, Y., Nouri, M., Martino, M. M., Fattahi, A., Alizadeh, E., Darabi, M., Rahmati-Yamchi, M. & Zarghami, N., 15 Aug 2017, In : Experimental Cell Research. 357, 2, p. 192-201 10 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Developmental and adult characterization of secretagogin expressing amacrine cells in zebrafish retina

Dudczig, S., Currie, P. D. & Jusuf, P. R., 1 Sep 2017, In : PLoS ONE. 12, 9, 17 p., e0185107.

Research output: Contribution to journalArticleResearchpeer-review

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5 Citations (Scopus)

Development of chorion-less zebrafish embryos in millifluidic living embryo arrays

Fuad, N. M., Kaslin, J. & Wlodkowic, D., 1 Sep 2017, In : Biomicrofluidics. 11, 5, 5 p., 051101-1.

Research output: Contribution to journalArticleResearchpeer-review

14 Citations (Scopus)

Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration

Kaslin, J., Kroehne, V., Ganz, J., Hans, S. & Brand, M., 15 Apr 2017, In : Development. 144, 8, p. 1462-1471 10 p.

Research output: Contribution to journalArticleResearchpeer-review

5 Citations (Scopus)

E6AP promotes prostate cancer by reducing p27 expression

Raghu, D., Paul, P. J., Gulati, T., Deb, S., Khoo, C., Russo, A., Gallo, E., Blandino, G., Chan, A-L., Takano, E. A., Sandhu, S. K., Fox, S. B., Williams, S., Haupt, S., Gamell, C. & Haupt, Y., 19 Apr 2017, In : Oncotarget. 8, 26, p. 42939-42948 10 p.

Research output: Contribution to journalArticleResearchpeer-review

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25 Citations (Scopus)

Endosteal-like extracellular matrix expression on melt electrospun written scaffolds

Muerza-Cascante, M. L., Shokoohmand, A., Khosrotehrani, K., Haylock, D., Dalton, P. D., Hutmacher, D. W. & Loessner, D., 1 Apr 2017, In : Acta Biomaterialia. 52, p. 145-158 14 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Ephrin-A2 regulates excitatory neuron differentiation and interneuron migration in the developing neocortex

Homman-Ludiye, J., Kwan, W. C., De Souza, M. J., Rodger, J. & Bourne, J. A., 1 Dec 2017, In : Scientific Reports. 7, 1, 15 p., 11813.

Research output: Contribution to journalArticleResearchpeer-review

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4 Citations (Scopus)

Essential role for CCR6 in certain inflammatory diseases demonstrated using specific antagonist and knockin mice

Robert, R., Ang, C., Sun, G., Juglair, L., Lim, E. X., Mason, L. J., Payne, N. L., Bernard, C. C. A. & Mackay, C. R., 3 Aug 2017, In : JCI Insight. 2, 15, 16 p.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

Fate bias during neural regeneration adjusts dynamically without recapitulating developmental fate progression

Ng Chi Kei, J., Currie, P. D. & Jusuf, P. R., 13 Jul 2017, In : Neural Development. 12, 1, 14 p., 12.

Research output: Contribution to journalArticleResearchpeer-review

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11 Citations (Scopus)

Fin-fold development in paddlefish and catshark and implications for the evolution of the autopod

Tulenko, F. J., Massey, J. L., Holmquist, E., Kigundu, G., Thomas, S., Smith, S. M. E., Mazan, S. & Davis, M. C., 31 May 2017, In : Proceedings of the Royal Society B: Biological Sciences. 284, 1855, 9 p., 20162780.

Research output: Contribution to journalArticleResearchpeer-review

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11 Citations (Scopus)

Germline Stem Cell Activity Is Sustained by SALL4-Dependent Silencing of Distinct Tumor Suppressor Genes

Chan, A. L., La, H. M., Legrand, J. M. D., Mäkelä, J. A., Eichenlaub, M., De Seram, M., Ramialison, M. & Hobbs, R. M., 12 Sep 2017, In : Stem Cell Reports. 9, 3, p. 956-971 16 p.

Research output: Contribution to journalArticleResearchpeer-review

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140 Citations (Scopus)

Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes

Marino, E., Richards, J. L., McLeod, K. H., Stanley, D., Yap, Y. A., Knight, J., McKenzie, C., Kranich, J., Oliveira, A. C., Rossello, F. J., Krishnamurthy, B., Nefzger, C. M., Macia, L., Thorburn, A., Baxter, A. G., Morahan, G., Wong, L. H., Polo, J. M., Moore, R. J., Lockett, T. J. & 4 others, Clarke, J. M., Topping, D. L., Harrison, L. C. & Mackay, C. R., May 2017, In : Nature Immunology. 18, 5, p. 552-562 13 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Immobilisation of Multiple Ligands Using Peptide Nucleic Acids: A Strategy to Prepare the Microenvironment for Cell Culture

Lee, E. J., Mari, C., Gel, M., Gardiner, J., Gasser, G. & Haylock, D., 15 May 2017, In : ChemistrySelect. 2, 14, p. 4028-4032 5 p.

Research output: Contribution to journalArticleResearchpeer-review

6 Citations (Scopus)

Impact of endurance exercise training on adipocyte microRNA expression in overweight men

Tsiloulis, T., Pike, J., Powell, D., Rossello, F. J., Canny, B. J., Meex, R. C. R. & Watt, M. J., Jan 2017, In : FASEB Journal. 31, 1, p. 161-171 11 p.

Research output: Contribution to journalArticleResearchpeer-review

2 Citations (Scopus)

Integrating piggyBac transposon transgenes into mouse fibroblasts by electroporation

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 831-833 3 p.

Research output: Contribution to journalArticleOtherpeer-review

1 Citation (Scopus)

Integrating piggyBac transposon transgenes into mouse fibroblasts using chemical methods

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 834-836 3 p.

Research output: Contribution to journalArticleOtherpeer-review

6 Citations (Scopus)

Intron retention enhances gene regulatory complexity in vertebrates

Schmitz, U., Pinello, N., Jia, F., Alasmari, S., Ritchie, W., Keightley, M-C., Shini, S., Lieschke, G. J., Wong, J. J. L. & Rasko, J. E. J., 16 Nov 2017, In : Genome Biology. 18, 1, 15 p., 216.

Research output: Contribution to journalArticleResearchpeer-review

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1 Citation (Scopus)

In vivo expression of Nurr1/Nr4a2a in developing retinal amacrine subtypes in zebrafish Tg(nr4a2a:eGFP) transgenics

Goodings, L., He, J., Wood, A. J., Harris, W. A., Currie, P. D. & Jusuf, P. R., 1 Jun 2017, In : Journal of Comparative Neurology. 525, 8, p. 1962-1979 18 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

In vivo imaging of transgenic gene expression in individual retinal progenitors in chimeric zebrafish embryos to study cell nonautonomous influences

Dudczig, S., Currie, P. D., Poggi, L. & Jusuf, P. R., 22 Mar 2017, In : Journal of Visualized Experiments. 2017, 121, e55490.

Research output: Contribution to journalArticleOtherpeer-review

Isolation, propagation, and differentiation of radial Glia-like neural progenitor cells in adherent cultures

Varga, B. & Nagy, A., 1 Sep 2017, In : Cold Spring Harbor Protocols. 2017, 9, p. 706-712 7 p.

Research output: Contribution to journalArticleOtherpeer-review

3 Citations (Scopus)

Mis-expression of grainyhead-like transcription factors in zebrafish leads to defects in enveloping layer (EVL) integrity, cellular morphogenesis and axial extension

Miles, L. B., Darido, C., Kaslin, J., Heath, J. K., Jane, S. M. & Dworkin, S., 1 Dec 2017, In : Scientific Reports. 7, 1, 14 p., 17607.

Research output: Contribution to journalArticleResearchpeer-review

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45 Citations (Scopus)

Multi-Cellular Transcriptional Analysis of Mammalian Heart Regeneration

Quaife-Ryan, G. A., Sim, C. B., Ziemann, M., Kaspi, A., Rafehi, H., Ramialison, M., El-Osta, A., Hudson, J. E. & Porrello, E. R., 19 Sep 2017, In : Circulation. 136, 12, p. 1123-1139 17 p.

Research output: Contribution to journalArticleResearchpeer-review

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27 Citations (Scopus)

Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish

Bower, N. I., Koltowska, K., Pichol-Thievend, C., Virshup, I., Paterson, S., Lagendijk, A. K., Wang, W., Lindsey, B. W., Bent, S. J., Baek, S., Rondon-Galeano, M., Hurley, D. G., Mochizuki, N., Simons, C., Francois, M., Wells, C. A., Kaslin, J. & Hogan, B. M., 1 Jun 2017, In : Nature Neuroscience. 20, 6, p. 774-783 10 p.

Research output: Contribution to journalArticleResearchpeer-review

20 Citations (Scopus)

Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest

Nguyen, P. D., Gurevich, D. B., Sonntag, C., Hersey, L., Alaei, S., Nim, H. T., Siegel, A., Hall, T. E., Rossello, F. J., Boyd, S. E., Polo, J. M. & Currie, P. D., 6 Jul 2017, In : Cell Stem Cell. 21, 1, p. 107-119.e6 19 p.

Research output: Contribution to journalArticleResearchpeer-review

3 Citations (Scopus)

Mutations in the Katnb1 gene cause left-right asymmetry and heart defects

Furtado, M. B., Merriner, D. J., Berger, S., Rhodes, D., Jamsai, D. & O'Bryan, M. K., Dec 2017, In : Developmental Dynamics. 246, 12, p. 1027-1035 9 p.

Research output: Contribution to journalArticleResearchpeer-review

6 Citations (Scopus)

Myo18b is essential for sarcomere assembly in fast skeletal muscle

Berger, J., Berger, S., Li, M. & Currie, P. D., 15 Mar 2017, In : Human Molecular Genetics. 26, 6, p. 1146-1156 11 p., ddx025.

Research output: Contribution to journalArticleResearchpeer-review

8 Citations (Scopus)

New Monoclonal Antibodies to Defined Cell Surface Proteins on Human Pluripotent Stem Cells

O'Brien, C. M., Chy, H. S., Zhou, Q., Blumenfeld, S., Lambshead, J. W., Liu, X., Kie, J., Capaldo, B. D., Chung, T-L., Adams, T. E., Phan, T., Bentley, J. D., McKinstry, W. J., Oliva, K., McMurrick, P. J., Wang, Y-C., Rossello, F. J., Lindeman, G. J., Chen, D., Jarde, T. & 7 others, Clark, A. T., Abud, H. E., Visvader, J. E., Nefzger, C. M., Polo, J. M., Loring, J. F. & Laslett, A. L., 1 Mar 2017, In : Stem Cells. 35, 3, p. 626-640 15 p.

Research output: Contribution to journalArticleResearchpeer-review

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7 Citations (Scopus)

Niche Extracellular Matrix Components and Their Influence on HSC

Domingues, M. J., Cao, H., Heazlewood, S. Y., Cao, B. & Nilsson, S. K., 1 Aug 2017, In : Journal of Cellular Biochemistry. 118, 8, p. 1984-1993 10 p.

Research output: Contribution to journalArticleOtherpeer-review

22 Citations (Scopus)

Nociceptors Boost the Resolution of Fungal Osteoinflammation via the TRP Channel-CGRP-Jdp2 Axis

Maruyama, K., Takayama, Y., Kondo, T., Ishibashi, K. I., Sahoo, B. R., Kanemaru, H., Kumagai, Y., Martino, M. M., Tanaka, H., Ohno, N., Iwakura, Y., Takemura, N., Tominaga, M. & Akira, S., 27 Jun 2017, In : Cell Reports. 19, 13, p. 2730-2742 13 p.

Research output: Contribution to journalArticleResearchpeer-review

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7 Citations (Scopus)

Optical projection tomography as a novel method to visualize and quantitate whole-brain patterns of cell proliferation in the adult zebrafish brain

Lindsey, B. W. & Kaslin, J., 1 Dec 2017, In : Zebrafish. 14, 6, p. 574-577 4 p.

Research output: Contribution to journalArticleResearchpeer-review

6 Citations (Scopus)

Overcoming Monocarboxylate Transporter 8 (MCT8)-Deficiency to Promote Human Oligodendrocyte Differentiation and Myelination

Lee, J. Y., Kim, M. J., Deliyanti, D., Azari, M. F., Rossello, F., Costin, A., Ramm, G., Stanley, E. G., Elefanty, A. G., Wilkinson-Berka, J. L. & Petratos, S., 1 Nov 2017, In : EBioMedicine. 25, p. 122-135 14 p.

Research output: Contribution to journalArticleResearchpeer-review

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6 Citations (Scopus)

Phosphorylation of Lbx1 controls lateral myoblast migration into the limb

Masselink, W., Masaki, M., Sieiro, D., Marcelle, C. & Currie, P. D., 15 Oct 2017, In : Developmental Biology. 430, 2, p. 302-309 8 p.

Research output: Contribution to journalArticleResearchpeer-review

4 Citations (Scopus)

Point mutations in murine Nkx2-5 phenocopy human congenital heart disease and induce pathogenic Wnt signaling

Furtado, M. B., Wilmanns, J. C., Chandran, A., Perera, J., Hon, O., Biben, C., Willow, T. J., Nim, H. T., Kaur, G., Simonds, S., Wu, Q., Willians, D., Salimova, E., Plachta, N., Denegre, J. M., Murray, S. A., Fatkin, D., Cowley, M., Pearson, J. T., Kaye, D. & 4 others, Ramialison, M., Harvey, R. P., Rosenthal, N. A. & Costa, M. W., 23 Mar 2017, In : JCI Insight. 2, 6, p. e88271 18 p., e88271.

Research output: Contribution to journalArticleResearch

Preparation of DNA from embryonic stem cells or other cultured cells

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Dec 2017, In : Cold Spring Harbor Protocols. 2017, 12, p. 1016-1018 3 p.

Research output: Contribution to journalArticleOtherpeer-review

3 Citations (Scopus)

Reprogramming mouse fibroblasts with piggyBac transposons

Behringer, R., Gertsenstein, M., Vintersten Nagy, K. & Nagy, A., 1 Oct 2017, In : Cold Spring Harbor Protocols. 2017, 10, p. 827-830 4 p.

Research output: Contribution to journalArticleOtherpeer-review

Shipment of live preimplantation-stage mouse embryos

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 May 2017, In : Cold Spring Harbor Protocols. 2017, 5, p. 387-390 4 p.

Research output: Contribution to journalArticleOtherpeer-review

1 Citation (Scopus)

Specification of murine ground state pluripotent stem cells to regional neuronal populations

Alsanie, W. F., Niclis, J. C., Hunt, C. P., De Luzy, I. R., Penna, V., Bye, C. R., Pouton, C. W., Haynes, J., Firas, J., Thompson, L. H. & Parish, C. L., 22 Nov 2017, In : Scientific Reports. 7, 1, 16 p., 16001.

Research output: Contribution to journalArticleResearchpeer-review

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6 Citations (Scopus)

Tailored emulsion-templated porous polymer scaffolds for iPSC-derived human neural precursor cell culture

Murphy, A. R., Ghobrial, I., Jamshidi, P., Laslett, A., O'Brien, C. M. & Cameron, N. R., 20 Nov 2017, In : Polymer Chemistry. 8, 43, p. 6617-6627 11 p.

Research output: Contribution to journalArticleResearchpeer-review

1 Citation (Scopus)

Testing serum batches for mouse embryonic stem cell culture

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Dec 2017, In : Cold Spring Harbor Protocols. 2017, 12, p. 988-991 4 p.

Research output: Contribution to journalArticleOtherpeer-review