Research Output 1970 2019

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2019

Additives migrating from 3D-printed plastic induce developmental toxicity and neuro-behavioural alterations in early life zebrafish (Danio rerio)

Walpitagama, M., Carve, M., Douek, A. M., Trestrail, C., Bai, Y., Kaslin, J. & Wlodkowic, D., 1 Aug 2019, In : Aquatic Toxicology. 213, 11 p., 105227.

Research output: Contribution to journalArticleResearchpeer-review

A modular millifluidic homeostatic imaging plate for imaging of larval zebrafish

Friedrich, T., Douek, A. M., Vandestadt, C., Wlodkowic, D. & Kaslin, J., 31 Jan 2019, In : Zebrafish. 16, 1, p. 37-46 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Amyloid precursor protein and amyloid precursor-like protein 2 have distinct roles in modulating myelination, demyelination, and remyelination of axons

Truong, P. H., Ciccotosto, G. D., Merson, T. D., Spoerri, L., Chuei, M. J., Ayers, M., Xing, Y. L., Emery, B. & Cappai, R., Mar 2019, In : GLIA. 67, 3, p. 525-538 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Antibiotic resistance and host immune evasion in Staphylococcus aureus mediated by a metabolic adaptation

Jiang, J-H., Bhuiyan, M. S., Shen, H-H., Cameron, D. R., Rupasinghe, T. W. T., Wu, C. M., Le Brun, A. P., Kostoulias, X., Domene, C., Fulcher, A. J., McConville, M. J., Howden, B. P., Lieschke, G. J. & Peleg, A. Y., 26 Feb 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 9, p. 3722-3727 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Combined Blockade of Smad3 and JNK Pathways Ameliorates Progressive Fibrosis in Folic Acid Nephropathy

Jiang, M., Fan, J., Qu, X., Li, S., Nilsson, S. K., Sun, Y. B. Y., Chen, Y., Yu, D., Liu, D., Liu, B-C., Tang, M., Chen, W., Ren, Y., Nikolic-Paterson, D. J., Jiang, X., Li, J. & Yu, X., 9 Aug 2019, In : Frontiers in Pharmacology. 10, 17 p., 880.

Research output: Contribution to journalArticleResearchpeer-review

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Culturing and measuring fetal and newborn murine long bones

Uribe, V. & Rosello Diez, A., 1 Apr 2019, In : Journal of visualized experiments : JoVE. 2019, 146, e59509.

Research output: Contribution to journalArticleOtherpeer-review

DDX5 plays essential transcriptional and post-transcriptional roles in the maintenance and function of spermatogonia

Legrand, J. M. D., Chan, A. L., La, H. M., Rossello, F., Anko, M-L., Fuller-Pace, F. V. & Hobbs, R., 1 Dec 2019, In : Nature Communications. 10, 1, 21 p., 2278.

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DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns

Skvortsova, K., Masle-Farquhar, E., Luu, P. L., Song, J. Z., Qu, W., Zotenko, E., Gould, C. M., Du, Q., Peters, T. J., Colino-Sanguino, Y., Pidsley, R., Nair, S. S., Khoury, A., Smith, G. C., Miosge, L. A., Reed, J. H., Kench, J. G., Rubin, M. A., Horvath, L., Bogdanovic, O. & 5 others, Lim, S. M., Polo, J. M., Goodnow, C. C., Stirzaker, C. & Clark, S. J., 11 Feb 2019, In : Cancer Cell. 35, 2, p. 297-314 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Effect of storage duration on cytokine stability in human serum and plasma

Vincent, F. B., Nim, H. T., Lee, J. P. W., Morand, E. F. & Harris, J., Jan 2019, In : Cytokine. 113, p. 453-457 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Engineering strategy and vector library for the rapid generation of modular light-controlled protein–protein interactions

Tichy, A-M., Gerrard, E. J., Legrand, J. M. D., Hobbs, R. M. & Janovjak, H., 9 Aug 2019, In : Journal of Molecular Biology. 431, 17, p. 3046-3055 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Fluorescently labeled TracrRNA improves work flow and facilitates successful genome editing in zebrafish

Hamimi, M., Khabooshan, M., Castillo, H. A. & Kaslin, J., 31 Jan 2019, In : Zebrafish. 16, 1, p. 135-137 3 p.

Research output: Contribution to journalArticleOtherpeer-review

High glucose levels affect retinal patterning during zebrafish embryogenesis

Singh, A., Castillo, H. A., Brown, J., Kaslin, J., Dwyer, K. M. & Gibert, Y., 11 Mar 2019, In : Scientific Reports. 9, 1, 13 p., 4121.

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HtrA4 may play a major role in inhibiting endothelial repair in pregnancy complication preeclampsia

Wang, Y., Lim, R. & Nie, G., 1 Dec 2019, In : Scientific Reports. 9, 1, 14 p., 2728.

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Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells

Nakanishi, M., Mitchell, R. R., Benoit, Y. D., Orlando, L., Reid, J. C., Shimada, K., Davidson, K. C., Shapovalova, Z., Collins, T. J., Nagy, A. & Bhatia, M., 2 May 2019, In : Cell. 177, 4, p. 910-924 15 p.

Research output: Contribution to journalArticleResearchpeer-review

In Situ Monitoring of Transiently Formed Molecular Chaperone Assemblies in Bacteria, Yeast, and Human Cells

Alberts, N., Mathangasinghe, Y. & Nillegoda, N. B., 2 Sep 2019, In : Journal of visualized experiments : JoVE. 151

Research output: Contribution to journalArticleOtherpeer-review

Isolation of synaptic vesicles from genetically engineered cultured neurons

McKenzie, C., Spanova, M., Johnson, A., Kainrath, S., Zheden, V., Sitte, H. H. & Janovjak, H., 15 Jan 2019, In : Journal of Neuroscience Methods. 312, p. 114-121 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration

Čapek, D., Smutny, M., Tichy, A-M., Morri, M., Janovjak, H. & Heisenberg, C. P., 16 Jan 2019, In : eLife. 8, 24 p., e42093.

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Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease

Wilmanns, J. C., Pandey, R., Hon, O., Chandran, A., Schilling, J. M., Forte, E., Wu, Q., Cagnone, G., Bais, P., Philip, V., Coleman, D., Kocalis, H., Archer, S. K., Pearson, J. T., Ramialison, M., Heineke, J., Patel, H. H., Rosenthal, N. A., Furtado, M. B. & Costa, M. W., Feb 2019, In : Molecular Metabolism. 20, p. 102-114 13 p.

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Midbrain tectal stem cells display diverse regenerative capacities in zebrafish

Lindsey, B. W., Aitken, G. E., Tang, J. K., Khabooshan, M., Douek, A. M., Vandestadt, C. & Kaslin, J., 14 Mar 2019, In : Scientific Reports. 9, 1, 20 p., 4420.

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More than blindsight: Case report of a child with extraordinary visual capacity following perinatal bilateral occipital lobe injury

Mundinano, I-C., Chen, J., de Souza, M., Sarossy, M. G., Joanisse, M. F., Goodale, M. A. & Bourne, J. A., May 2019, In : Neuropsychologia. 128, p. 178-186 9 p.

Research output: Contribution to journalArticleOtherpeer-review

Muscle precursor cell movements in zebrafish are dynamic and require Six family genes

Talbot, J. C., Teets, E. M., Ratnayake, D., Duy, P. Q., Currie, P. D. & Amacher, S. L., 15 May 2019, In : Development (Cambridge, England). 146, 10, 13 p., dev171421.

Research output: Contribution to journalArticleResearchpeer-review

Optimized peptide functionalization of thiol-acrylate emulsion-templated porous polymers leads to expansion of human pluripotent stem cells in 3D culture

Ratcliffe, J. L., Walker, M., Eissa, A. M., Du, S., Przyborski, S. A., Laslett, A. L. & Cameron, N. R., 9 Mar 2019, (Accepted/In press) In : Journal of Polymer Science, Part A: Polymer Chemistry. 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Prehensile kinematics of the marmoset monkey: Implications for the evolution of visually-guided behaviors

Fox, D. M., Mundinano, I-C. & Bourne, J. A., 15 Jun 2019, In : Journal of Comparative Neurology. 527, 9, p. 1495-1507 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Revealing cellular and molecular transitions in neonatal germ cell differentiation using single cell RNA sequencing

Liao, J., Ng, S. H., Luk, A. C., Suen, H. C., Qian, Y., Lee, A. W. T., Tu, J., Fung, J. C. L., Tang, N. L. S., Feng, B., Chan, W. Y., Fouchet, P., Hobbs, R. M. & Lee, T. L., 27 Mar 2019, In : Development (Cambridge). 146, 6, 15 p., dev174953.

Research output: Contribution to journalArticleResearchpeer-review

RGD inhibition of itgb1 ameliorates laminin-a2 deficient zebrafish fibre pathology

Wood, A. J., Cohen, N., Joshi, V., Li, M., Costin, A., Hersey, L., McKaige, E. A., Manneken, J. D., Sonntag, C., Miles, L., Siegel, A. & Currie, P. D., 1 May 2019, In : Human Molecular Genetics. 28, 9, p. 1403-1413 11 p., ddy426.

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Single-Molecular Heteroamyloidosis of Human Islet Amyloid Polypeptide

Kakinen, A., Xing, Y., Hegoda Arachchi, N., Javed, I., Feng, L., Faridi, A., Douek, A. M., Sun, Y., Kaslin, J., Davis, T. P., Higgins, M. J., Ding, F. & Ke, P. C., 11 Sep 2019, In : Nano Letters. 19, 9, p. 6535-6546 12 p.

Research output: Contribution to journalArticleResearchpeer-review

TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network

Seruggia, D., Oti, M., Tripathi, P., Canver, M. C., LeBlanc, L., Di Giammartino, D. C., Bullen, M. J., Nefzger, C. M., Sun, Y. B. Y., Farouni, R., Polo, J. M., Pinello, L., Apostolou, E., Kim, J., Orkin, S. H. & Das, P. P., 20 Jun 2019, In : Molecular Cell. 74, 6, p. 1148-1163 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Thalamocortical Afferents Innervate the Cortical Subplate much Earlier in Development in Primate than in Rodent

Alzu'bi, A., Homman-Ludiye, J., Bourne, J. A. & Clowry, G. J., 1 Apr 2019, In : Cerebral Cortex. 29, 4, p. 1706-1718 13 p.

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The medial pulvinar: function, origin and association with neurodevelopmental disorders

Homman-Ludiye, J. & Bourne, J. A., Sep 2019, In : Journal of Anatomy. 235, 3, p. 507-520 14 p.

Research output: Contribution to journalArticleResearchpeer-review

The use of live cell imaging and automated image analysis to assist with determining optimal parameters for angiogenic assay in vitro

Huuskes, B. M., DeBuque, R. J., Kerr, P. G., Samuel, C. S. & Ricardo, S. D., 10 Apr 2019, In : Frontiers in Cell and Developmental Biology. 7, 14 p., 45.

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Unravelling the subcortical and retinal circuitry of the primate inferior pulvinar

Kwan, W. C., Mundinano, I-C., de Souza, M. J., Lee, S. C. S., Martin, P. R., Grünert, U. & Bourne, J. A., 15 Feb 2019, In : Journal of Comparative Neurology. 527, 3, p. 558-576 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Variable outcomes of human heart attack recapitulated in genetically diverse mice

Salimova, E., Nowak, K. J., Estrada, A. C., Furtado, M. B., McNamara, E., Nguyen, Q., Balmer, L., Preuss, C., Holmes, J. W., Ramialison, M., Morahan, G. & Rosenthal, N. A., 4 Mar 2019, In : Npj Regenerative Medicine. 4, 15 p., 5.

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2018

A Combined In Vivo HSC Transduction/Selection Approach Results in Efficient and Stable Gene Expression in Peripheral Blood Cells in Mice

Wang, H., Richter, M., Psatha, N., Li, C., Kim, J., Liu, J., Ehrhardt, A., Nilsson, S. K., Cao, B., Palmer, D., Ng, P., Izsvák, Z., Haworth, K. G., Kiem, H. P., Papayannopoulou, T. & Lieber, A., 16 Mar 2018, In : Molecular Therapy - Methods and Clinical Development. 8, p. 52-64 13 p.

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Acute or Delayed Systemic Administration of Human Amnion Epithelial Cells Improves Outcomes in Experimental Stroke

Evans, M. A., Lim, R., Kim, H. A., Chu, H. X., Gardiner-Mann, C. V., Taylor, K. W. E., Chan, C. T., Brait, V. H., Lee, S., Dinh, Q. N., Vinh, A., Phan, T. G., Srikanth, V. K., Ma, H., Arumugam, T. V., Fann, D. Y., Poh, L., Hunt, C. P. J., Pouton, C. W., Haynes, J. M. & 12 others, Selemidis, S., Kwan, W., Teo, L., Bourne, J. A., Neumann, S., Young, S., Gowing, E. K., Drummond, G. R., Clarkson, A. N., Wallace, E. M., Sobey, C. G. & Broughton, B. R. S., 1 Mar 2018, In : Stroke. 49, 3, p. 700-709 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

van Oppen, M. J. H., Bongaerts, P., Frade, P., Peplow, LM., Boyd, S. E., Nim, H. T. & Bay, L. K., 1 Jul 2018, In : Molecular Ecology. 27, 14, p. 2956-2971 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Administration of gonadotropins for superovulation in mice

Behringer, R., Gertsenstein, M., Nagy, K. V. & Nagy, A., 1 Jan 2018, In : Cold Spring Harbor Protocols. 2018, 1, p. 24-27 4 p.

Research output: Contribution to journalArticleOtherpeer-review

A gene regulatory network anchored by LIM homeobox 1 for embryonic head development

Sibbritt, T., Ip, C. K., Khoo, P. L., Wilkie, E., Jones, V., Sun, J. Q. J., Shen, J. X., Peng, G., Han, J. D. J., Jing, N., Osteil, P., Ramialison, M., Tam, P. P. L. & Fossat, N., 1 Sep 2018, In : Genesis. 56, 9, 13 p., e23246.

Research output: Contribution to journalArticleResearchpeer-review

A genome-wide Drosophila epithelial tumorigenesis screen identifies Tetraspanin 29Fb as an evolutionarily conserved suppressor of Ras-driven cancer

Zoranovic, T., Manent, J., Willoughby, L., Matos de Simoes, R., La Marca, J. E., Golenkina, S., Cuiping, X., Gruber, S., Angjeli, B., Kanitz, E. E., Cronin, S. J. F., Neely, G. G., Wernitznig, A., Humbert, P. O., Simpson, K. J., Mitsiades, C. S., Richardson, H. E. & Penninger, J. M., 16 Oct 2018, In : PLoS Genetics. 14, 10, 36 p., e1007688.

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A low-cost pulse generator for exacerbating muscle fiber detachment phenotypes in Zebrafish

Thomasi, A. B. D., Sonntag, C., Pires, D. F., Zuidema, D., Benci, A., Currie, P. D. & Wood, A. J., 1 Aug 2018, In : Zebrafish. 15, 4, p. 420-424 5 p.

Research output: Contribution to journalArticleResearchpeer-review

A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs

Pflueger, C., Tan, D., Swain, T., Nguyen, T., Pflueger, J., Nefzger, C., Polo, J. M., Ford, E. & Lister, R., 1 Aug 2018, In : Genome Research. 28, 8, p. 1193-1206 14 p.

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A whole brain staining, embedding, and clearing pipeline for adult zebrafish to visualize cell proliferation and morphology in 3-dimensions

Lindsey, B. W., Douek, A. M., Loosli, F. & Kaslin, J., 17 Jan 2018, In : Frontiers in Neuroscience. 11, 20 p., 750.

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Blocking fatty acid-fueled mROS production within macrophages alleviates acute gouty inflammation

Hall, C. J., Sanderson, L. E., Lawrence, L. M., Pool, B., Van Der Kroef, M., Ashimbayeva, E., Britto, D., Harper, J. L., Lieschke, G. J., Astin, J. W., Crosier, K. E., Dalbeth, N. & Crosier, P. S., 1 May 2018, In : Journal of Clinical Investigation. 128, 5, p. 1752-1771 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice

Rosello-Diez, A., Madisen, L., Bastide, S., Zeng, H. & Joyner, A. L., 26 Jun 2018, In : PLoS Biology. 16, 6, 28 p., e2005086.

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Cep55 overexpression causes male-specific sterility in mice by suppressing Foxo1 nuclear retention through sustained activation of P13K/Akt signaling

Sinha, D., Kalimutho, M., Bowles, J., Chan, A-L., Merriner, D. J., Bain, A. L., Simmons, J. L., Freire, R., Lopez, J. A., Hobbs, R. M., O'Bryan, M. K. & Khanna, K. K., Sep 2018, In : FASEB Journal. 32, 9, p. 4984-4999 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Characterization of 3D-printed moulds for soft lithography of millifluidic devices

Fuad, N. M., Carve, M., Kaslin, J. & Wlodkowic, D., 8 Mar 2018, In : Micromachines. 9, 3, 11 p., 116.

Research output: Contribution to journalArticleResearchpeer-review

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Chick muscle development

Scaal, M. & Marcelle, C., 2018, In : International Journal of Developmental Biology. 62, 1-3, p. 123-132 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Control of cardiac jelly dynamics by NOTCH1 and NRG1 defines the building plan for trabeculation

del Monte-Nieto, G., Ramialison, M., Adam, A. A. S., Wu, B., Aharonov, A., D’uva, G., Bourke, L. M., Pitulescu, M. E., Chen, H., de la Pompa, J. L., Shou, W., Adams, R. H., Harten, S. K., Tzahor, E., Zhou, B. & Harvey, R. P., 9 May 2018, In : Nature. 557, 7705, p. 439-445 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Cover Image, Volume 526, Issue 17

Homman-Ludiye, J., Kwan, W. C., de Souza, M. J. & Bourne, J. A., 1 Dec 2018, In : The Journal of comparative neurology. 526, 17

Research output: Contribution to journalArticleOtherpeer-review

Deep multi-region whole-genome sequencing reveals heterogeneity and gene-by-environment interactions in treatment-naive, metastatic lung cancer

Leong, T. L., Gayevskiy, V., Steinfort, D. P., De Massy, M. R., Gonzalez-Rajal, A., Marini, K. D., Stone, E., Chin, V., Havryk, A., Plit, M., Irving, L. B., Jennings, B. R., McCloy, R. A., Jayasekara, W. S. N., Alamgeer, M., Boolell, V., Field, A., Russell, P. A., Kumar, B., Gough, D. J. & 8 others, Szczepny, A., Ganju, V., Rossello, F. J., Cain, J. E., Papenfuss, A. T., Asselin-Labat, M. L., Cowley, M. J. & Watkins, D. N., 7 Mar 2018, In : Oncogene. 38, 10, p. 1661-1675 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Different Fgfs have distinct roles in regulating neurogenesis after spinal cord injury in zebrafish

Goldshmit, Y., Tang, J. K. K. Y., Siegel, A. L., Nguyen, P. D., Kaslin, J., Currie, P. D. & Jusuf, P. R., 17 Nov 2018, In : Neural Development. 13, 1, 14 p., 24.

Research output: Contribution to journalArticleResearchpeer-review

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